Wall clock time and date at job start Wed Apr 1 2020 01:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34258 * 125.75453 * 2 1 4 4 C 1.38046 * 107.41871 * 179.90112 * 3 2 1 5 5 C 1.47431 * 126.41514 * 180.10582 * 4 3 2 6 6 O 1.21605 * 119.99896 * 180.30356 * 5 4 3 7 7 N 1.34771 * 119.99797 * 0.29902 * 5 4 3 8 8 C 1.46506 * 119.99737 * 180.02562 * 7 5 4 9 9 H 1.09000 * 109.46940 * 324.99567 * 8 7 5 10 10 C 1.52997 * 109.47320 * 84.99878 * 8 7 5 11 11 C 1.52996 * 109.47280 * 180.02562 * 10 8 7 12 12 C 1.53009 * 109.47097 * 300.00154 * 11 10 8 13 13 C 1.52997 * 109.47182 * 59.99785 * 12 11 10 14 14 H 1.09009 * 109.47299 * 59.99680 * 13 12 11 15 15 N 1.46498 * 109.47330 * 180.02562 * 13 12 11 16 16 C 1.36937 * 119.99752 * 274.99932 * 15 13 12 17 17 H 1.07993 * 120.00029 * 0.02562 * 16 15 13 18 18 C 1.38819 * 119.99754 * 179.97438 * 16 15 13 19 19 N 1.31612 * 119.99787 * 180.02562 * 18 16 15 20 20 Si 1.86803 * 119.99845 * 0.02562 * 18 16 15 21 21 H 1.48495 * 109.47167 * 90.00058 * 20 18 16 22 22 H 1.48499 * 109.47000 * 210.00109 * 20 18 16 23 23 H 1.48499 * 109.47045 * 330.00131 * 20 18 16 24 24 C 1.53002 * 109.46921 * 205.00125 * 8 7 5 25 25 C 1.41290 * 107.16845 * 0.35603 * 4 3 2 26 26 C 1.50699 * 125.98691 * 179.79708 * 25 4 3 27 27 F 1.39897 * 109.47128 * 210.00208 * 26 25 4 28 28 F 1.39895 * 109.47453 * 330.00500 * 26 25 4 29 29 N 1.30443 * 108.02479 * 359.78268 * 25 4 3 30 30 H 1.09002 * 109.47391 * 269.71592 * 1 2 3 31 31 H 1.09001 * 109.46813 * 149.71649 * 1 2 3 32 32 H 1.09004 * 109.47041 * 29.71776 * 1 2 3 33 33 H 1.08000 * 126.29357 * 0.02562 * 3 2 1 34 34 H 0.96991 * 120.00586 * 0.02562 * 7 5 4 35 35 H 1.09000 * 109.46952 * 299.99987 * 10 8 7 36 36 H 1.08997 * 109.46867 * 60.00018 * 10 8 7 37 37 H 1.09000 * 109.47059 * 59.99640 * 11 10 8 38 38 H 1.08999 * 109.47518 * 180.02562 * 11 10 8 39 39 H 1.08999 * 109.47130 * 179.97438 * 12 11 10 40 40 H 1.08997 * 109.47052 * 300.00104 * 12 11 10 41 41 H 0.97000 * 120.00037 * 95.00060 * 15 13 12 42 42 H 0.97002 * 120.00075 * 179.97438 * 19 18 16 43 43 H 1.08997 * 109.47163 * 299.99919 * 24 8 7 44 44 H 1.08998 * 109.47434 * 59.99976 * 24 8 7 45 45 H 1.09010 * 109.46925 * 90.00363 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2495 1.0895 0.0000 4 6 3.5598 0.6553 0.0023 5 6 4.7638 1.5061 0.0053 6 8 5.8682 0.9970 0.0015 7 7 4.6405 2.8482 0.0121 8 6 5.8369 3.6937 0.0146 9 1 6.6203 3.2130 0.6005 10 6 6.3239 3.8925 -1.4221 11 6 7.5737 4.7750 -1.4195 12 6 7.2372 6.1340 -0.8024 13 6 6.7502 5.9352 0.6343 14 1 7.5335 5.4540 1.2202 15 7 6.4274 7.2364 1.2250 16 6 7.4142 7.9896 1.8030 17 1 8.4304 7.6247 1.8230 18 6 7.1084 9.2228 2.3623 19 7 8.0569 9.9470 2.9174 20 14 5.3507 9.8543 2.3270 21 1 4.6377 9.4021 3.5485 22 1 5.3589 11.3385 2.2794 23 1 4.6584 9.3243 1.1249 24 6 5.4998 5.0526 0.6315 25 6 3.5311 -0.7573 -0.0047 26 6 4.7322 -1.6675 -0.0095 27 9 4.4139 -2.8562 -0.6748 28 9 5.7937 -1.0355 -0.6659 29 7 2.2827 -1.1356 -0.0061 30 1 -0.3634 -0.0051 1.0276 31 1 -0.3633 -0.8875 -0.5182 32 1 -0.3633 0.8925 -0.5095 33 1 1.9166 2.1170 0.0004 34 1 3.7597 3.2543 0.0155 35 1 6.5641 2.9244 -1.8616 36 1 5.5405 4.3732 -2.0080 37 1 8.3569 4.2939 -0.8337 38 1 7.9204 4.9170 -2.4431 39 1 8.1277 6.7626 -0.8001 40 1 6.4540 6.6151 -1.3882 41 1 5.5147 7.5643 1.2067 42 1 7.8433 10.8089 3.3078 43 1 4.7164 5.5333 0.0456 44 1 5.1529 4.9110 1.6551 45 1 5.0219 -1.8920 1.0171 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981142425.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:44:22 Heat of formation + Delta-G solvation = -50.076751 kcal Electronic energy + Delta-G solvation = -30050.304725 eV Core-core repulsion = 25547.398544 eV Total energy + Delta-G solvation = -4502.906182 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.161 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.01351 -46.99333 -41.94440 -39.69022 -37.87925 -34.81086 -34.21815 -33.42931 -31.41149 -31.19287 -29.31403 -28.88594 -28.12601 -25.93651 -23.62972 -23.12676 -22.11849 -21.36661 -20.61140 -20.24944 -19.58948 -18.39227 -17.67085 -17.50438 -17.05474 -16.70916 -16.16139 -16.07873 -16.01041 -14.91546 -14.75900 -14.52379 -14.24714 -13.93969 -13.79055 -13.64870 -13.62313 -13.47708 -13.34471 -13.20825 -13.03784 -12.81471 -12.65145 -12.24188 -12.22590 -11.71338 -11.38889 -11.26489 -11.00797 -10.98101 -10.85979 -10.43034 -10.28722 -10.17350 -10.15643 -10.03095 -9.67758 -9.58647 -9.27075 -8.95960 -8.88829 -7.28132 -5.77556 -3.13178 0.99241 1.45431 1.65225 3.08789 3.25890 3.33083 3.34565 3.36467 3.42944 3.75038 4.02567 4.14613 4.49096 4.51521 4.57275 4.69961 4.73748 4.79369 4.83228 4.93586 5.03854 5.20744 5.28660 5.45239 5.52503 5.57806 5.62706 5.65136 5.79660 5.83994 5.95689 6.07851 6.16046 6.22842 6.27660 6.40246 6.48909 6.58175 6.65895 6.85408 6.89818 7.03722 7.49495 7.99501 8.24460 8.41566 9.19945 9.92249 10.11909 11.40901 Molecular weight = 342.16amu Principal moments of inertia in cm(-1) A = 0.016188 B = 0.002499 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.308006 B =11200.273388 C =12321.925389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.353 5.353 3 C 0.102 3.898 4 C -0.258 4.258 5 C 0.584 3.416 6 O -0.519 6.519 7 N -0.722 5.722 8 C 0.152 3.848 9 H 0.092 0.908 10 C -0.124 4.124 11 C -0.115 4.115 12 C -0.137 4.137 13 C 0.188 3.812 14 H 0.058 0.942 15 N -0.749 5.749 16 C -0.241 4.241 17 H 0.091 0.909 18 C 0.003 3.997 19 N -0.934 5.934 20 Si 0.885 3.115 21 H -0.285 1.285 22 H -0.292 1.292 23 H -0.278 1.278 24 C -0.133 4.133 25 C 0.050 3.950 26 C 0.356 3.644 27 F -0.197 7.197 28 F -0.158 7.158 29 N -0.261 5.261 30 H 0.085 0.915 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.191 0.809 34 H 0.393 0.607 35 H 0.063 0.937 36 H 0.059 0.941 37 H 0.062 0.938 38 H 0.057 0.943 39 H 0.067 0.933 40 H 0.053 0.947 41 H 0.360 0.640 42 H 0.259 0.741 43 H 0.062 0.938 44 H 0.069 0.931 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.053 -21.933 -7.869 28.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.132 5.132 3 C -0.049 4.049 4 C -0.273 4.273 5 C 0.370 3.630 6 O -0.395 6.395 7 N -0.372 5.372 8 C 0.048 3.952 9 H 0.110 0.890 10 C -0.163 4.163 11 C -0.153 4.153 12 C -0.177 4.177 13 C 0.078 3.922 14 H 0.076 0.924 15 N -0.390 5.390 16 C -0.371 4.371 17 H 0.109 0.891 18 C -0.193 4.193 19 N -0.582 5.582 20 Si 0.715 3.285 21 H -0.212 1.212 22 H -0.218 1.218 23 H -0.204 1.204 24 C -0.172 4.172 25 C -0.119 4.119 26 C 0.300 3.700 27 F -0.178 7.178 28 F -0.139 7.139 29 N -0.083 5.083 30 H 0.103 0.897 31 H 0.115 0.885 32 H 0.115 0.885 33 H 0.208 0.792 34 H 0.226 0.774 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.086 0.914 40 H 0.071 0.929 41 H 0.192 0.808 42 H 0.069 0.931 43 H 0.080 0.920 44 H 0.088 0.912 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -16.973 -23.211 -7.788 29.791 hybrid contribution -1.435 1.644 -0.124 2.186 sum -18.408 -21.567 -7.912 29.438 Atomic orbital electron populations 1.22120 0.72710 1.05447 1.04412 1.48407 1.07437 1.03474 1.53874 1.23183 0.90026 0.94048 0.97629 1.20225 0.93431 0.92673 1.20952 1.17160 0.87579 0.81715 0.76552 1.90885 1.26284 1.73174 1.49156 1.45946 1.09972 1.05424 1.75895 1.20996 0.86990 0.90205 0.97005 0.89021 1.21890 0.98260 1.00017 0.96136 1.21482 0.96928 0.96312 1.00626 1.22253 1.01748 0.95575 0.98133 1.20088 0.93793 0.85970 0.92340 0.92373 1.42769 1.07849 1.18402 1.70030 1.19086 0.90839 0.98451 1.28712 0.89120 1.24679 0.96878 0.97104 1.00593 1.69698 1.31212 1.13502 1.43794 0.86547 0.86124 0.78199 0.77612 1.21190 1.21840 1.20398 1.22140 1.00132 0.94051 1.00857 1.22972 0.93908 0.93765 1.01254 1.19381 0.80574 0.75968 0.94032 1.93020 1.93269 1.47817 1.83702 1.93209 1.55757 1.81612 1.83335 1.77188 1.00459 1.07523 1.23097 0.89683 0.88515 0.88536 0.79216 0.77384 0.91841 0.92267 0.91890 0.92388 0.91441 0.92860 0.80791 0.93086 0.91950 0.91238 0.85330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.24 11.44 59.85 0.68 0.92 16 2 N -0.35 -2.56 3.98 -67.60 -0.27 -2.82 16 3 C 0.10 0.70 10.99 -16.56 -0.18 0.52 16 4 C -0.26 -2.70 6.09 -105.06 -0.64 -3.34 16 5 C 0.58 7.27 7.74 -12.52 -0.10 7.18 16 6 O -0.52 -8.24 12.92 5.27 0.07 -8.17 16 7 N -0.72 -7.63 5.07 -54.88 -0.28 -7.91 16 8 C 0.15 1.95 2.45 -67.93 -0.17 1.78 16 9 H 0.09 1.35 7.58 -51.93 -0.39 0.96 16 10 C -0.12 -1.59 5.49 -26.73 -0.15 -1.73 16 11 C -0.11 -1.59 5.92 -26.73 -0.16 -1.74 16 12 C -0.14 -2.28 5.50 -26.73 -0.15 -2.43 16 13 C 0.19 3.40 2.77 -67.90 -0.19 3.21 16 14 H 0.06 1.13 8.08 -51.92 -0.42 0.71 16 15 N -0.75 -16.93 4.92 -53.40 -0.26 -17.20 16 16 C -0.24 -6.63 10.41 -15.06 -0.16 -6.79 16 17 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 18 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 19 N -0.93 -29.05 13.97 55.49 0.78 -28.28 16 20 Si 0.88 21.57 27.74 -169.99 -4.71 16.85 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 23 H -0.28 -6.30 6.52 56.52 0.37 -5.93 16 24 C -0.13 -1.86 4.86 -26.70 -0.13 -1.99 16 25 C 0.05 0.56 6.89 -82.02 -0.56 0.00 16 26 C 0.36 3.94 5.66 36.01 0.20 4.14 16 27 F -0.20 -2.32 17.27 2.25 0.04 -2.28 16 28 F -0.16 -2.22 13.58 2.25 0.03 -2.19 16 29 N -0.26 -2.77 12.43 33.89 0.42 -2.35 16 30 H 0.08 0.12 8.14 -51.93 -0.42 -0.30 16 31 H 0.10 0.23 8.14 -51.93 -0.42 -0.20 16 32 H 0.10 0.00 8.14 -51.93 -0.42 -0.42 16 33 H 0.19 0.49 7.46 -52.49 -0.39 0.10 16 34 H 0.39 2.93 7.52 -40.82 -0.31 2.62 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 40 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.36 7.93 5.66 -40.82 -0.23 7.70 16 42 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 43 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 45 H 0.13 1.03 8.14 -51.92 -0.42 0.61 16 LS Contribution 374.69 15.07 5.65 5.65 Total: -1.00 -36.39 374.69 -6.74 -43.12 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -6.41 Total: 5.85 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: -1.78 Total: -0.27 kcal Atomic # 7 Polarization: -58.94 SS G_CDS: 0.39 Total: -58.55 kcal Atomic # 8 Polarization: -8.24 SS G_CDS: 0.07 Total: -8.17 kcal Atomic # 9 Polarization: -4.54 SS G_CDS: 0.07 Total: -4.47 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.71 Total: 16.85 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -36.39 -6.74 -43.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981142425.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.954 kcal (2) G-P(sol) polarization free energy of solvation -36.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds