Wall clock time and date at job start Wed Apr 1 2020 01:42:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36937 * 119.99975 * 2 1 4 4 H 1.08001 * 119.99289 * 202.86661 * 3 2 1 5 5 C 1.38806 * 120.00069 * 22.86492 * 3 2 1 6 6 N 1.31618 * 120.00167 * 15.49039 * 5 3 2 7 7 Si 1.86802 * 120.00072 * 195.48755 * 5 3 2 8 8 H 1.48506 * 109.46966 * 60.00032 * 7 5 3 9 9 H 1.48493 * 109.47354 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.46998 * 300.00140 * 7 5 3 11 11 C 1.46501 * 119.99679 * 179.97438 * 2 1 3 12 12 H 1.09010 * 109.49138 * 179.97438 * 11 2 1 13 13 C 1.53034 * 109.50095 * 299.99851 * 11 2 1 14 14 C 1.53042 * 109.53785 * 181.31605 * 13 11 2 15 15 C 1.53188 * 109.31332 * 298.63773 * 14 13 11 16 16 N 1.46922 * 108.77675 * 54.63902 * 15 14 13 17 17 C 1.34772 * 120.63527 * 126.36694 * 16 15 14 18 18 O 1.21627 * 120.00057 * 188.73512 * 17 16 15 19 19 C 1.47159 * 119.99773 * 8.73609 * 17 16 15 20 20 C 1.38406 * 126.88500 * 27.47556 * 19 17 16 21 21 C 1.39671 * 105.35665 * 179.97438 * 20 19 17 22 22 C 1.50707 * 126.06606 * 179.97438 * 21 20 19 23 23 F 1.39900 * 109.47036 * 209.99965 * 22 21 20 24 24 F 1.39901 * 109.46961 * 329.99813 * 22 21 20 25 25 N 1.30857 * 107.86886 * 0.22619 * 21 20 19 26 26 N 1.28450 * 110.92108 * 359.61353 * 25 21 20 27 27 C 1.46506 * 125.18687 * 180.16310 * 26 25 21 28 28 C 1.46935 * 118.73411 * 306.63606 * 16 15 14 29 29 H 1.09000 * 109.47118 * 275.37718 * 1 2 3 30 30 H 1.09000 * 109.47038 * 35.37683 * 1 2 3 31 31 H 1.08999 * 109.47048 * 155.37869 * 1 2 3 32 32 H 0.96999 * 120.00105 * 180.02562 * 6 5 3 33 33 H 1.09004 * 109.45852 * 61.29951 * 13 11 2 34 34 H 1.09001 * 109.44859 * 301.33281 * 13 11 2 35 35 H 1.08997 * 109.49830 * 178.68346 * 14 13 11 36 36 H 1.09007 * 109.49514 * 58.59275 * 14 13 11 37 37 H 1.08997 * 109.58896 * 294.84546 * 15 14 13 38 38 H 1.09008 * 109.70378 * 174.49145 * 15 14 13 39 39 H 1.07996 * 127.32200 * 359.97438 * 20 19 17 40 40 H 1.08996 * 109.47232 * 90.00312 * 22 21 20 41 41 H 1.09003 * 109.46580 * 272.03228 * 27 26 25 42 42 H 1.08996 * 109.47492 * 32.03737 * 27 26 25 43 43 H 1.09001 * 109.47052 * 152.03419 * 27 26 25 44 44 H 1.09000 * 109.58501 * 173.14367 * 28 16 15 45 45 H 1.08993 * 109.58865 * 293.57396 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1661 1.2225 -0.3635 5 6 1.5375 2.3408 0.4671 6 7 0.4358 2.2584 1.1824 7 14 2.2773 4.0119 0.0805 8 1 2.3273 4.2026 -1.3915 9 1 1.4399 5.0767 0.6887 10 1 3.6524 4.0850 0.6361 11 6 2.1975 -1.2688 0.0006 12 1 3.2693 -1.0700 0.0000 13 6 1.8282 -2.0712 1.2502 14 6 2.6176 -3.3823 1.2683 15 6 2.2496 -4.2123 0.0345 16 7 2.4654 -3.3947 -1.1670 17 6 3.2365 -3.8465 -2.1757 18 8 3.5378 -3.1038 -3.0906 19 6 3.7139 -5.2385 -2.1703 20 6 3.1002 -6.3249 -1.5713 21 6 3.9303 -7.4148 -1.8429 22 6 3.6989 -8.8376 -1.4031 23 9 4.9305 -9.4781 -1.2291 24 9 2.9953 -8.8434 -0.1940 25 7 4.9475 -6.9804 -2.5423 26 7 4.8513 -5.7175 -2.7559 27 6 5.8170 -4.9125 -3.5081 28 6 1.8293 -2.0725 -1.2453 29 1 -0.3633 0.0963 1.0231 30 1 -0.3633 0.8379 -0.5950 31 1 -0.3633 -0.9342 -0.4281 32 1 0.0077 3.0655 1.5085 33 1 0.7605 -2.2904 1.2387 34 1 2.0700 -1.4894 2.1397 35 1 2.3716 -3.9426 2.1703 36 1 3.6855 -3.1642 1.2549 37 1 1.2021 -4.5079 0.0921 38 1 2.8783 -5.1017 -0.0110 39 1 2.1760 -6.3290 -1.0127 40 1 3.1204 -9.3632 -2.1628 41 1 6.5964 -4.5566 -2.8342 42 1 6.2654 -5.5221 -4.2925 43 1 5.3077 -4.0598 -3.9572 44 1 2.1826 -1.5491 -2.1337 45 1 0.7468 -2.1901 -1.2942 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027490643.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:42:00 Heat of formation + Delta-G solvation = -17.505828 kcal Electronic energy + Delta-G solvation = -30753.427395 eV Core-core repulsion = 26251.933595 eV Total energy + Delta-G solvation = -4501.493800 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.161 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -49.24954 -47.27605 -43.01474 -39.91892 -37.56340 -35.32483 -34.05819 -32.63643 -31.61395 -31.09302 -29.05695 -28.71758 -26.07843 -25.94876 -25.28446 -23.76420 -22.80643 -21.63404 -21.44098 -19.77952 -18.95173 -17.88314 -17.54843 -17.49001 -16.82004 -16.65814 -16.39188 -16.33000 -15.49762 -15.13779 -14.71719 -14.53605 -14.14981 -13.99681 -13.92029 -13.66543 -13.60202 -13.40804 -13.35915 -13.01545 -12.80265 -12.71217 -12.68453 -12.38662 -12.03210 -11.79113 -11.29729 -11.07432 -10.93459 -10.89182 -10.67281 -10.48368 -10.37732 -10.21905 -10.10346 -9.93620 -9.77423 -9.59737 -9.31193 -8.69628 -8.45754 -6.80201 -5.76086 -3.22472 1.00604 1.84183 1.94591 2.85239 2.98924 3.36891 3.38074 3.43363 3.45230 3.78661 4.01262 4.24643 4.46804 4.56052 4.65883 4.86395 4.89387 4.90481 5.08395 5.10859 5.22105 5.26835 5.33768 5.40328 5.46502 5.52444 5.69502 5.79230 5.86415 5.92557 6.09645 6.13312 6.25345 6.31395 6.43644 6.52983 6.69377 6.87184 6.94319 7.30183 7.33599 7.53467 7.67575 7.78128 8.00030 8.36037 9.19066 9.81941 10.30227 11.28398 Molecular weight = 342.16amu Principal moments of inertia in cm(-1) A = 0.020692 B = 0.002664 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.852032 B =10506.044940 C =11357.507869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.159 3.841 2 N -0.590 5.590 3 C -0.259 4.259 4 H 0.068 0.932 5 C 0.005 3.995 6 N -0.904 5.904 7 Si 0.904 3.096 8 H -0.284 1.284 9 H -0.291 1.291 10 H -0.283 1.283 11 C 0.169 3.831 12 H 0.065 0.935 13 C -0.133 4.133 14 C -0.132 4.132 15 C 0.089 3.911 16 N -0.584 5.584 17 C 0.586 3.414 18 O -0.537 6.537 19 C -0.018 4.018 20 C -0.164 4.164 21 C -0.062 4.062 22 C 0.367 3.633 23 F -0.193 7.193 24 F -0.191 7.191 25 N -0.241 5.241 26 N -0.247 5.247 27 C 0.076 3.924 28 C 0.098 3.902 29 H 0.033 0.967 30 H 0.039 0.961 31 H 0.001 0.999 32 H 0.253 0.747 33 H 0.058 0.942 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.063 0.937 37 H 0.073 0.927 38 H 0.094 0.906 39 H 0.175 0.825 40 H 0.130 0.870 41 H 0.088 0.912 42 H 0.098 0.902 43 H 0.119 0.881 44 H 0.093 0.907 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.785 -21.581 -5.151 22.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.312 5.312 3 C -0.388 4.388 4 H 0.086 0.914 5 C -0.194 4.194 6 N -0.549 5.549 7 Si 0.734 3.266 8 H -0.210 1.210 9 H -0.216 1.216 10 H -0.209 1.209 11 C 0.060 3.940 12 H 0.083 0.917 13 C -0.173 4.173 14 C -0.170 4.170 15 C -0.033 4.033 16 N -0.316 5.316 17 C 0.371 3.629 18 O -0.415 6.415 19 C -0.147 4.147 20 C -0.192 4.192 21 C -0.219 4.219 22 C 0.311 3.689 23 F -0.174 7.174 24 F -0.172 7.172 25 N -0.076 5.076 26 N -0.035 5.035 27 C -0.063 4.063 28 C -0.025 4.025 29 H 0.052 0.948 30 H 0.058 0.942 31 H 0.019 0.981 32 H 0.063 0.937 33 H 0.077 0.923 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.112 0.888 39 H 0.192 0.808 40 H 0.147 0.853 41 H 0.107 0.893 42 H 0.117 0.883 43 H 0.137 0.863 44 H 0.111 0.889 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.909 -21.239 -6.124 22.880 hybrid contribution -0.357 1.211 0.464 1.345 sum 5.552 -20.028 -5.660 21.540 Atomic orbital electron populations 1.20803 0.82647 0.95410 0.99670 1.43875 1.01760 0.99951 1.85625 1.19162 0.98417 0.85257 1.35965 0.91448 1.24979 0.98108 0.98446 0.97845 1.70061 1.20883 1.27369 1.36562 0.86347 0.78348 0.83791 0.78132 1.21026 1.21641 1.20931 1.20488 0.96593 0.86349 0.90596 0.91663 1.22148 0.99479 0.94645 1.01006 1.21930 1.01084 0.97431 0.96600 1.22326 1.02004 0.94513 0.84478 1.47921 1.47978 1.19050 1.16661 1.16851 0.79080 0.84024 0.82905 1.90793 1.57637 1.56817 1.36256 1.21588 0.92355 0.96204 1.04517 1.22123 1.02921 0.89765 1.04394 1.22356 0.96220 0.97027 1.06250 1.19328 0.78762 0.86840 0.83959 1.93028 1.45582 1.82722 1.96064 1.93030 1.78560 1.96996 1.48649 1.73079 1.22677 0.94602 1.17263 1.45710 1.16862 1.04501 1.36460 1.22546 0.91580 0.95688 0.96500 1.22479 0.96999 0.80456 1.02574 0.94844 0.94206 0.98095 0.93673 0.92314 0.91297 0.90928 0.91847 0.90862 0.88825 0.80803 0.85307 0.89326 0.88302 0.86262 0.88894 0.91237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.73 8.05 59.85 0.48 4.21 16 2 N -0.59 -14.18 2.81 -173.60 -0.49 -14.67 16 3 C -0.26 -6.98 9.57 -15.06 -0.14 -7.12 16 4 H 0.07 1.80 7.84 -52.49 -0.41 1.39 16 5 C 0.00 0.14 5.05 -17.43 -0.09 0.05 16 6 N -0.90 -25.81 10.84 55.49 0.60 -25.20 16 7 Si 0.90 21.69 29.58 -169.99 -5.03 16.66 16 8 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 9 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 C 0.17 3.30 2.72 -68.03 -0.19 3.11 16 12 H 0.07 1.36 7.87 -51.92 -0.41 0.96 16 13 C -0.13 -2.23 5.15 -26.69 -0.14 -2.36 16 14 C -0.13 -1.68 6.08 -26.61 -0.16 -1.84 16 15 C 0.09 1.02 5.18 -3.71 -0.02 1.00 16 16 N -0.58 -8.40 2.98 -174.40 -0.52 -8.91 16 17 C 0.59 8.71 7.52 -12.64 -0.10 8.61 16 18 O -0.54 -9.40 14.44 5.25 0.08 -9.33 16 19 C -0.02 -0.23 6.39 -82.06 -0.52 -0.76 16 20 C -0.16 -1.74 8.23 -38.98 -0.32 -2.06 16 21 C -0.06 -0.66 6.84 -82.47 -0.56 -1.22 16 22 C 0.37 3.03 5.84 36.01 0.21 3.24 16 23 F -0.19 -1.99 17.27 2.25 0.04 -1.95 16 24 F -0.19 -1.72 17.06 2.25 0.04 -1.68 16 25 N -0.24 -2.92 11.83 33.64 0.40 -2.52 16 26 N -0.25 -2.96 3.75 -63.88 -0.24 -3.20 16 27 C 0.08 0.70 11.14 59.85 0.67 1.37 16 28 C 0.10 1.69 5.78 -3.93 -0.02 1.66 16 29 H 0.03 0.85 7.32 -51.93 -0.38 0.47 16 30 H 0.04 1.01 7.41 -51.93 -0.38 0.63 16 31 H 0.00 0.01 6.36 -51.93 -0.33 -0.32 16 32 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 33 H 0.06 0.98 7.72 -51.93 -0.40 0.57 16 34 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.06 0.85 8.14 -51.92 -0.42 0.42 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.09 0.96 4.33 -51.92 -0.22 0.73 16 39 H 0.17 1.47 6.51 -52.49 -0.34 1.13 16 40 H 0.13 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.12 1.23 6.12 -51.93 -0.32 0.91 16 44 H 0.09 1.80 7.00 -51.93 -0.36 1.44 16 45 H 0.07 1.17 6.48 -51.93 -0.34 0.83 16 LS Contribution 365.69 15.07 5.51 5.51 Total: -1.00 -32.08 365.69 -6.51 -38.59 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: -5.99 Total: -1.17 kcal Atomic # 6 Polarization: 8.79 SS G_CDS: -0.90 Total: 7.89 kcal Atomic # 7 Polarization: -54.26 SS G_CDS: -0.25 Total: -54.51 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: 0.08 Total: -9.33 kcal Atomic # 9 Polarization: -3.71 SS G_CDS: 0.08 Total: -3.64 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.03 Total: 16.66 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.08 -6.51 -38.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027490643.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.081 kcal (2) G-P(sol) polarization free energy of solvation -32.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds