Wall clock time and date at job start Wed Apr 1 2020 01:20:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46500 * 109.47417 * 2 1 4 4 C 1.34784 * 119.99871 * 273.01405 * 3 2 1 5 5 O 1.21571 * 120.00026 * 185.29174 * 4 3 2 6 6 C 1.47711 * 119.99604 * 5.29174 * 4 3 2 7 7 C 1.41497 * 126.51585 * 185.65582 * 6 4 3 8 8 C 1.35363 * 105.50386 * 179.97438 * 7 6 4 9 9 C 1.50706 * 126.38541 * 179.97438 * 8 7 6 10 10 F 1.39896 * 109.47132 * 120.02272 * 9 8 7 11 11 F 1.39906 * 109.47010 * 240.02459 * 9 8 7 12 12 N 1.35030 * 107.22911 * 0.02562 * 8 7 6 13 13 C 1.46500 * 124.88323 * 180.02562 * 12 8 7 14 14 N 1.28473 * 110.23141 * 359.75091 * 12 8 7 15 15 C 1.46500 * 120.00308 * 93.01314 * 3 2 1 16 16 H 1.09000 * 110.64225 * 358.31680 * 15 3 2 17 17 C 1.55160 * 110.71925 * 234.97647 * 15 3 2 18 18 C 1.54912 * 101.57932 * 206.13601 * 17 15 3 19 19 N 1.47417 * 104.83319 * 37.01019 * 18 17 15 20 20 C 1.36936 * 125.64959 * 156.13685 * 19 18 17 21 21 H 1.07996 * 120.00608 * 179.69120 * 20 19 18 22 22 C 1.38818 * 119.99932 * 359.69125 * 20 19 18 23 23 N 1.31624 * 119.99711 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00298 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.46930 * 59.99868 * 24 22 20 26 26 H 1.48494 * 109.47035 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.46944 * 300.00159 * 24 22 20 28 28 C 1.47023 * 108.70464 * 335.87245 * 19 18 17 29 29 H 1.08994 * 109.47288 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47442 * 300.00710 * 1 2 3 31 31 H 1.09003 * 109.46796 * 60.00126 * 1 2 3 32 32 H 1.08998 * 109.47566 * 239.99692 * 2 1 3 33 33 H 1.09001 * 109.46848 * 119.99339 * 2 1 3 34 34 H 1.08003 * 127.24837 * 0.02562 * 7 6 4 35 35 H 1.09003 * 109.46774 * 0.02562 * 9 8 7 36 36 H 1.09000 * 109.47311 * 90.00247 * 13 12 8 37 37 H 1.09008 * 109.46826 * 210.00279 * 13 12 8 38 38 H 1.09003 * 109.47469 * 329.99588 * 13 12 8 39 39 H 1.08991 * 111.00587 * 324.20595 * 17 15 3 40 40 H 1.09002 * 111.00412 * 88.06239 * 17 15 3 41 41 H 1.09001 * 110.36411 * 278.16974 * 18 17 15 42 42 H 1.08996 * 110.36513 * 155.85471 * 18 17 15 43 43 H 0.97003 * 119.99869 * 180.02562 * 23 22 20 44 44 H 1.08997 * 109.88106 * 120.47589 * 28 19 18 45 45 H 1.09005 * 109.88272 * 241.64166 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1851 2.0370 -1.1657 5 8 2.6805 3.1472 -1.1730 6 6 1.7661 1.4067 -2.4341 7 6 1.9761 1.9164 -3.7373 8 6 1.4266 1.0060 -4.5748 9 6 1.3866 1.0850 -6.0793 10 9 2.0527 -0.0191 -6.6220 11 9 0.0559 1.0853 -6.5111 12 7 0.9198 0.0145 -3.8110 13 6 0.2349 -1.1735 -4.3264 14 7 1.1297 0.2601 -2.5675 15 6 2.3254 2.0496 1.2669 16 1 2.1087 1.3935 2.1100 17 6 1.5414 3.3831 1.3882 18 6 2.4558 4.1960 2.3384 19 7 3.8287 3.8300 1.9457 20 6 4.9482 4.5904 2.1548 21 1 5.9139 4.2299 1.8327 22 6 4.8417 5.8249 2.7807 23 7 3.6648 6.2642 3.1736 24 14 6.3689 6.8620 3.0665 25 1 7.0060 7.1749 1.7621 26 1 5.9888 8.1254 3.7480 27 1 7.3259 6.1098 3.9171 28 6 3.7979 2.5104 1.2982 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5140 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8932 -0.5137 0.8901 34 1 2.4714 2.8375 -4.0069 35 1 1.8756 2.0020 -6.4081 36 1 0.9633 -1.9649 -4.5030 37 1 -0.5013 -1.5132 -3.5977 38 1 -0.2671 -0.9264 -5.2618 39 1 1.4515 3.8730 0.4188 40 1 0.5604 3.2203 1.8345 41 1 2.2702 3.9157 3.3753 42 1 2.2933 5.2647 2.1987 43 1 3.5904 7.1270 3.6106 44 1 4.1841 2.5872 0.2818 45 1 4.3959 1.8020 1.8717 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033897270.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:20:30 Heat of formation + Delta-G solvation = 0.569028 kcal Electronic energy + Delta-G solvation = -30998.558915 eV Core-core repulsion = 26497.848899 eV Total energy + Delta-G solvation = -4500.710016 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.55813 -47.53926 -43.01254 -39.76172 -36.68054 -35.45505 -33.77737 -32.47004 -32.04436 -30.16368 -28.96667 -28.06336 -26.95218 -26.28412 -24.49070 -23.71936 -22.57589 -21.38302 -20.69640 -20.01968 -18.92460 -17.87533 -17.72363 -17.61979 -16.86171 -16.69963 -16.42457 -16.11350 -15.06080 -14.67700 -14.55739 -14.42000 -14.26220 -14.20826 -13.90280 -13.76253 -13.67076 -13.26349 -13.21523 -13.10168 -12.90391 -12.77125 -12.09334 -11.99958 -11.88257 -11.62210 -11.39390 -11.17453 -10.92458 -10.80099 -10.76569 -10.67629 -10.40388 -10.02526 -9.73425 -9.60703 -9.44932 -9.33317 -9.21459 -8.49718 -8.21769 -6.64223 -5.49346 -2.89282 1.27124 1.72231 2.00826 2.95641 3.27453 3.50804 3.52922 3.54310 3.56214 3.60977 3.90351 4.17938 4.44079 4.55928 4.63872 4.64897 4.92202 4.94462 5.10096 5.15843 5.34941 5.38698 5.51489 5.54537 5.65243 5.66938 5.77737 5.88882 5.91811 6.02390 6.03930 6.18155 6.40376 6.42676 6.64913 6.71433 6.73840 6.87346 7.30342 7.49328 7.64011 7.75013 7.78268 8.01640 8.48461 8.53932 9.38017 9.99320 10.64869 11.54708 Molecular weight = 342.16amu Principal moments of inertia in cm(-1) A = 0.017701 B = 0.002809 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.419977 B = 9965.520461 C =10948.074783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.108 3.892 3 N -0.593 5.593 4 C 0.591 3.409 5 O -0.496 6.496 6 C -0.007 4.007 7 C -0.129 4.129 8 C -0.081 4.081 9 C 0.348 3.652 10 F -0.196 7.196 11 F -0.196 7.196 12 N -0.266 5.266 13 C 0.080 3.920 14 N -0.232 5.232 15 C 0.136 3.864 16 H 0.090 0.910 17 C -0.154 4.154 18 C 0.158 3.842 19 N -0.596 5.596 20 C -0.212 4.212 21 H 0.075 0.925 22 C -0.014 4.014 23 N -0.925 5.925 24 Si 0.914 3.086 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.287 1.287 28 C 0.131 3.869 29 H 0.058 0.942 30 H 0.052 0.948 31 H 0.059 0.941 32 H 0.088 0.912 33 H 0.073 0.927 34 H 0.172 0.828 35 H 0.142 0.858 36 H 0.090 0.910 37 H 0.102 0.898 38 H 0.096 0.904 39 H 0.078 0.922 40 H 0.053 0.947 41 H 0.009 0.991 42 H 0.107 0.893 43 H 0.250 0.750 44 H 0.040 0.960 45 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.245 -17.589 -17.869 27.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.015 4.015 3 N -0.326 5.326 4 C 0.376 3.624 5 O -0.368 6.368 6 C -0.165 4.165 7 C -0.157 4.157 8 C -0.205 4.205 9 C 0.293 3.707 10 F -0.177 7.177 11 F -0.177 7.177 12 N -0.055 5.055 13 C -0.060 4.060 14 N -0.069 5.069 15 C 0.033 3.967 16 H 0.108 0.892 17 C -0.193 4.193 18 C 0.033 3.967 19 N -0.322 5.322 20 C -0.341 4.341 21 H 0.093 0.907 22 C -0.209 4.209 23 N -0.574 5.574 24 Si 0.745 3.255 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.214 1.214 28 C 0.004 3.996 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.106 0.894 33 H 0.091 0.909 34 H 0.190 0.810 35 H 0.159 0.841 36 H 0.108 0.892 37 H 0.121 0.879 38 H 0.114 0.886 39 H 0.097 0.903 40 H 0.072 0.928 41 H 0.027 0.973 42 H 0.125 0.875 43 H 0.061 0.939 44 H 0.058 0.942 45 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges -10.430 -17.797 -17.225 26.874 hybrid contribution 0.898 0.754 -0.351 1.224 sum -9.533 -17.043 -17.576 26.273 Atomic orbital electron populations 1.22088 0.95992 1.01423 1.02105 1.21685 0.94700 0.82241 1.02910 1.47845 1.64932 1.14005 1.05772 1.16868 0.79226 0.85041 0.81280 1.90939 1.41803 1.18391 1.85635 1.22219 1.04890 0.93784 0.95639 1.21608 1.02874 1.00873 0.90362 1.21690 1.09700 0.94865 0.94274 1.19852 0.76488 0.89673 0.84710 1.93041 1.80340 1.57334 1.86983 1.93031 1.36938 1.97095 1.90685 1.45443 1.39801 1.17118 1.03091 1.22315 0.98166 0.84320 1.01172 1.73914 1.16776 1.17099 0.99114 1.22249 0.97287 0.94221 0.82943 0.89187 1.23410 0.97754 0.95594 1.02584 1.21842 0.81667 1.00991 0.92186 1.44279 1.04177 1.15576 1.68133 1.19018 0.85994 0.97824 1.31262 0.90736 1.24752 0.97001 0.97799 1.01350 1.69790 1.21095 1.20378 1.46154 0.86156 0.81994 0.79655 0.77731 1.21251 1.21683 1.21398 1.21522 0.92443 0.88506 0.97104 0.92306 0.92863 0.92199 0.89408 0.90865 0.81023 0.84076 0.89200 0.87936 0.88578 0.90342 0.92846 0.97281 0.87536 0.93882 0.94173 0.96653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.73 9.68 37.15 0.36 -1.37 16 2 C 0.11 1.33 5.66 -4.04 -0.02 1.30 16 3 N -0.59 -9.67 2.54 -165.18 -0.42 -10.09 16 4 C 0.59 10.52 6.76 -12.39 -0.08 10.44 16 5 O -0.50 -10.90 13.29 5.30 0.07 -10.83 16 6 C -0.01 -0.10 6.64 -82.77 -0.55 -0.65 16 7 C -0.13 -1.56 10.72 -39.37 -0.42 -1.98 16 8 C -0.08 -0.79 6.35 -82.21 -0.52 -1.31 16 9 C 0.35 2.42 5.27 36.01 0.19 2.61 16 10 F -0.20 -1.54 17.25 2.25 0.04 -1.51 16 11 F -0.20 -1.54 16.30 2.25 0.04 -1.51 16 12 N -0.27 -2.60 3.70 -63.85 -0.24 -2.84 16 13 C 0.08 0.45 11.04 59.85 0.66 1.11 16 14 N -0.23 -2.78 6.92 33.42 0.23 -2.55 16 15 C 0.14 2.58 3.44 -66.10 -0.23 2.35 16 16 H 0.09 1.52 7.84 -51.93 -0.41 1.11 16 17 C -0.15 -3.26 6.40 -24.58 -0.16 -3.42 16 18 C 0.16 4.12 5.89 -2.53 -0.01 4.10 16 19 N -0.60 -16.44 3.39 -170.08 -0.58 -17.02 16 20 C -0.21 -6.31 10.27 -15.06 -0.15 -6.47 16 21 H 0.07 2.15 7.83 -52.49 -0.41 1.74 16 22 C -0.01 -0.42 5.49 -17.43 -0.10 -0.52 16 23 N -0.92 -28.23 10.09 55.49 0.56 -27.67 16 24 Si 0.91 23.14 29.55 -169.99 -5.02 18.12 16 25 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 26 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 27 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 28 C 0.13 3.03 6.47 -3.06 -0.02 3.01 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.73 6.57 -51.93 -0.34 0.39 16 32 H 0.09 1.05 5.74 -51.93 -0.30 0.75 16 33 H 0.07 0.80 7.90 -51.93 -0.41 0.39 16 34 H 0.17 1.86 8.06 -52.48 -0.42 1.44 16 35 H 0.14 0.55 8.11 -51.93 -0.42 0.12 16 36 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.10 0.44 8.14 -51.92 -0.42 0.01 16 38 H 0.10 0.45 6.83 -51.93 -0.35 0.09 16 39 H 0.08 1.81 6.00 -51.93 -0.31 1.50 16 40 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 42 H 0.11 3.13 5.87 -51.93 -0.30 2.82 16 43 H 0.25 7.40 8.31 -40.82 -0.34 7.07 16 44 H 0.04 0.99 6.11 -51.93 -0.32 0.68 16 45 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 366.60 15.07 5.52 5.52 Total: -1.00 -35.95 366.60 -6.95 -42.90 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: -6.09 Total: -1.77 kcal Atomic # 6 Polarization: 10.28 SS G_CDS: -1.06 Total: 9.22 kcal Atomic # 7 Polarization: -59.72 SS G_CDS: -0.44 Total: -60.16 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: 0.07 Total: -10.83 kcal Atomic # 9 Polarization: -3.09 SS G_CDS: 0.08 Total: -3.01 kcal Atomic # 14 Polarization: 23.14 SS G_CDS: -5.02 Total: 18.12 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -35.95 -6.95 -42.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033897270.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.470 kcal (2) G-P(sol) polarization free energy of solvation -35.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds