Wall clock time and date at job start Wed Apr 1 2020 01:35:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21281 * 120.00148 * 2 1 4 4 N 1.34778 * 119.99673 * 179.97438 * 2 1 3 5 5 C 1.46503 * 119.99716 * 179.97438 * 4 2 1 6 6 C 1.50700 * 109.46948 * 179.97438 * 5 4 2 7 7 O 1.21284 * 119.99931 * 0.02562 * 6 5 4 8 8 N 1.34779 * 120.00217 * 179.97438 * 6 5 4 9 9 C 1.46500 * 120.00213 * 180.02562 * 8 6 5 10 10 C 1.50695 * 109.46902 * 180.02562 * 9 8 6 11 11 O 1.21280 * 120.00269 * 359.97438 * 10 9 8 12 12 N 1.34778 * 119.99917 * 179.72602 * 10 9 8 13 13 C 1.46494 * 120.00322 * 180.27308 * 12 10 9 14 14 H 1.08998 * 109.46009 * 325.00227 * 13 12 10 15 15 C 1.53046 * 109.46117 * 84.97298 * 13 12 10 16 16 C 1.53188 * 109.31358 * 181.40344 * 15 13 12 17 17 N 1.46932 * 108.76318 * 305.34017 * 16 15 13 18 18 C 1.36933 * 120.63311 * 233.63546 * 17 16 15 19 19 H 1.08003 * 119.99913 * 151.80591 * 18 17 16 20 20 C 1.38808 * 120.00203 * 331.81565 * 18 17 16 21 21 N 1.31624 * 119.99867 * 343.08604 * 20 18 17 22 22 Si 1.86803 * 120.00213 * 163.08543 * 20 18 17 23 23 H 1.48492 * 109.47038 * 59.99898 * 22 20 18 24 24 H 1.48499 * 109.46972 * 180.02562 * 22 20 18 25 25 H 1.48493 * 109.46882 * 299.99596 * 22 20 18 26 26 C 1.46926 * 118.73739 * 53.62136 * 17 16 15 27 27 C 1.53039 * 109.46458 * 205.02689 * 13 12 10 28 28 H 1.09001 * 109.49907 * 298.60397 * 27 13 12 29 29 O 1.42903 * 109.49455 * 58.66190 * 27 13 12 30 30 H 1.09000 * 109.47061 * 240.00404 * 1 2 3 31 31 H 1.09003 * 109.46767 * 359.97438 * 1 2 3 32 32 H 1.09000 * 109.47302 * 119.99886 * 1 2 3 33 33 H 0.96997 * 120.00010 * 359.97438 * 4 2 1 34 34 H 1.09000 * 109.47036 * 60.00325 * 5 4 2 35 35 H 1.08993 * 109.47323 * 300.00196 * 5 4 2 36 36 H 0.97004 * 119.99782 * 0.02562 * 8 6 5 37 37 H 1.09000 * 109.46947 * 60.00345 * 9 8 6 38 38 H 1.09000 * 109.47035 * 300.00060 * 9 8 6 39 39 H 0.97008 * 119.99748 * 0.27795 * 12 10 9 40 40 H 1.09000 * 109.49423 * 301.33865 * 15 13 12 41 41 H 1.08992 * 109.49466 * 61.43344 * 15 13 12 42 42 H 1.09000 * 109.58612 * 185.56708 * 16 15 13 43 43 H 1.08999 * 109.72213 * 65.20070 * 16 15 13 44 44 H 0.97002 * 120.00052 * 180.02562 * 21 20 18 45 45 H 1.09002 * 109.58784 * 186.60149 * 26 17 16 46 46 H 1.09001 * 109.70415 * 66.24536 * 26 17 16 47 47 H 0.96702 * 113.99718 * 180.02562 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1673 0.0005 5 6 3.6458 -1.1673 0.0000 6 6 4.1481 -2.5881 0.0013 7 8 3.3599 -3.5099 0.0022 8 7 5.4732 -2.8345 0.0006 9 6 5.9615 -4.2157 0.0014 10 6 7.4684 -4.2157 0.0009 11 8 8.0749 -3.1654 -0.0005 12 7 8.1423 -5.3829 0.0071 13 6 9.6072 -5.3830 0.0127 14 1 9.9726 -4.5430 -0.5780 15 6 10.1116 -5.2522 1.4517 16 6 11.6431 -5.2173 1.4505 17 7 12.1423 -6.4038 0.7420 18 6 13.0479 -7.2416 1.3361 19 1 13.0763 -8.2864 1.0640 20 6 13.9294 -6.7481 2.2880 21 7 14.1341 -5.4516 2.3860 22 14 14.8252 -7.9241 3.4301 23 1 15.6518 -8.8606 2.6271 24 1 15.7012 -7.1520 4.3476 25 1 13.8344 -8.6942 4.2238 26 6 11.6510 -6.6743 -0.6160 27 6 10.1194 -6.6923 -0.5918 28 1 9.7745 -7.5314 0.0124 29 8 9.6228 -6.8286 -1.9248 30 1 -0.3633 -0.5138 0.8900 31 1 -0.3633 1.0277 0.0005 32 1 -0.3634 -0.5138 -0.8900 33 1 1.6957 -2.0072 0.0013 34 1 4.0095 -0.6529 0.8895 35 1 4.0088 -0.6540 -0.8904 36 1 6.1036 -2.0972 -0.0005 37 1 5.5975 -4.7302 -0.8880 38 1 5.5987 -4.7288 0.8920 39 1 7.6572 -6.2230 0.0077 40 1 9.7273 -4.3309 1.8895 41 1 9.7673 -6.1048 2.0368 42 1 12.0095 -5.2238 2.4771 43 1 11.9902 -4.3165 0.9444 44 1 14.7504 -5.1068 3.0510 45 1 12.0226 -7.6420 -0.9530 46 1 11.9966 -5.8939 -1.2941 47 1 9.9082 -7.6383 -2.3699 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099894530.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:35:01 Heat of formation + Delta-G solvation = -136.594309 kcal Electronic energy + Delta-G solvation = -29520.789670 eV Core-core repulsion = 25125.219321 eV Total energy + Delta-G solvation = -4395.570349 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.178 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.70215 -39.98991 -39.28359 -38.07485 -35.49362 -35.09778 -34.72724 -34.40466 -32.10326 -31.05209 -30.29765 -29.10178 -28.39995 -26.52507 -24.93053 -22.53665 -22.00088 -21.05447 -20.98344 -20.52210 -19.64950 -18.46375 -17.35112 -17.12955 -16.87782 -16.63287 -16.54822 -16.17350 -15.95610 -15.75019 -15.28063 -14.93307 -14.83961 -14.22286 -13.98986 -13.89811 -13.62013 -13.57044 -13.31308 -13.20037 -12.97634 -12.93100 -12.72997 -12.41212 -12.35071 -12.10375 -11.65745 -11.17864 -10.91393 -10.78926 -10.50132 -10.43127 -10.37950 -10.35254 -10.09446 -9.98214 -9.82253 -9.68017 -9.55384 -9.52917 -8.92080 -8.53179 -6.83632 -5.90796 -3.35727 2.08366 2.23485 2.27996 2.53329 2.94562 3.29957 3.32679 3.37769 3.38200 4.19247 4.28407 4.42470 4.44581 4.61740 4.83530 4.83879 4.96480 4.96943 5.04157 5.05660 5.19483 5.26202 5.39876 5.40837 5.44974 5.68170 5.82262 5.86040 5.87381 6.00574 6.16812 6.39399 6.41128 6.56791 6.68220 6.70506 7.00746 7.06445 7.20512 7.45733 7.53899 7.66922 7.68483 7.78427 7.82749 8.14607 8.31705 9.07012 9.69179 10.24828 11.17813 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.023881 B = 0.001773 C = 0.001707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.180454 B =15791.967879 C =16400.336205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.512 3.488 3 O -0.547 6.547 4 N -0.721 5.721 5 C 0.099 3.901 6 C 0.513 3.487 7 O -0.542 6.542 8 N -0.709 5.709 9 C 0.100 3.900 10 C 0.506 3.494 11 O -0.539 6.539 12 N -0.708 5.708 13 C 0.163 3.837 14 H 0.089 0.911 15 C -0.147 4.147 16 C 0.171 3.829 17 N -0.587 5.587 18 C -0.263 4.263 19 H 0.067 0.933 20 C 0.007 3.993 21 N -0.899 5.899 22 Si 0.905 3.095 23 H -0.282 1.282 24 H -0.289 1.289 25 H -0.283 1.283 26 C 0.121 3.879 27 C 0.080 3.920 28 H 0.057 0.943 29 O -0.572 6.572 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.413 0.587 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.417 0.583 37 H 0.100 0.900 38 H 0.100 0.900 39 H 0.400 0.600 40 H 0.062 0.938 41 H 0.059 0.941 42 H 0.093 0.907 43 H 0.025 0.975 44 H 0.257 0.743 45 H 0.060 0.940 46 H 0.029 0.971 47 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.376 2.743 -5.382 24.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.300 3.700 3 O -0.424 6.424 4 N -0.377 5.377 5 C -0.028 4.028 6 C 0.299 3.701 7 O -0.420 6.420 8 N -0.364 5.364 9 C -0.027 4.027 10 C 0.291 3.709 11 O -0.417 6.417 12 N -0.358 5.358 13 C 0.059 3.941 14 H 0.108 0.892 15 C -0.187 4.187 16 C 0.045 3.955 17 N -0.311 5.311 18 C -0.392 4.392 19 H 0.084 0.916 20 C -0.193 4.193 21 N -0.542 5.542 22 Si 0.735 3.265 23 H -0.208 1.208 24 H -0.215 1.215 25 H -0.209 1.209 26 C -0.007 4.007 27 C 0.019 3.981 28 H 0.075 0.925 29 O -0.376 6.376 30 H 0.108 0.892 31 H 0.113 0.887 32 H 0.108 0.892 33 H 0.251 0.749 34 H 0.121 0.879 35 H 0.120 0.880 36 H 0.255 0.745 37 H 0.118 0.882 38 H 0.118 0.882 39 H 0.233 0.767 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.112 0.888 43 H 0.043 0.957 44 H 0.067 0.933 45 H 0.079 0.921 46 H 0.047 0.953 47 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -23.172 4.249 -5.127 24.110 hybrid contribution 0.748 -1.702 0.487 1.922 sum -22.425 2.547 -4.640 23.041 Atomic orbital electron populations 1.21899 0.91007 1.05712 1.04569 1.20862 0.90836 0.82971 0.75376 1.90751 1.70852 1.31392 1.49415 1.45787 1.05851 1.10069 1.75992 1.21029 0.82495 0.93869 1.05416 1.20470 0.82330 0.91267 0.76049 1.90706 1.55182 1.45905 1.50170 1.45589 1.07158 1.09050 1.74632 1.21113 0.91949 0.84691 1.04974 1.20338 0.89229 0.84626 0.76699 1.90720 1.69708 1.31110 1.50120 1.46007 1.08174 1.07878 1.73692 1.21075 0.77238 0.98017 0.97772 0.89247 1.22610 1.01110 1.01181 0.93788 1.20832 0.86446 0.88447 0.99821 1.44025 1.48710 1.28267 1.10111 1.19113 1.10449 0.90109 1.19516 0.91559 1.25085 0.96993 0.95804 1.01393 1.70019 1.37265 1.11278 1.35661 0.86335 0.79268 0.80167 0.80764 1.20779 1.21524 1.20937 1.21524 0.90216 0.99729 0.89243 1.22782 0.96741 0.96276 0.82332 0.92482 1.86468 1.75902 1.46763 1.28512 0.89162 0.88737 0.89167 0.74928 0.87942 0.87955 0.74458 0.88161 0.88190 0.76660 0.91908 0.92234 0.88846 0.95729 0.93314 0.92102 0.95299 0.77839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.76 10.32 36.00 0.37 -0.38 16 2 C 0.51 4.36 7.94 -10.99 -0.09 4.27 16 3 O -0.55 -7.00 17.09 5.56 0.09 -6.91 16 4 N -0.72 -5.48 5.53 -61.47 -0.34 -5.82 16 5 C 0.10 0.78 6.15 -5.19 -0.03 0.75 16 6 C 0.51 4.76 7.90 -10.98 -0.09 4.67 16 7 O -0.54 -6.26 15.67 5.55 0.09 -6.17 16 8 N -0.71 -6.62 5.53 -61.47 -0.34 -6.96 16 9 C 0.10 0.96 6.15 -5.20 -0.03 0.93 16 10 C 0.51 6.54 7.86 -10.99 -0.09 6.45 16 11 O -0.54 -8.86 15.33 5.56 0.09 -8.77 16 12 N -0.71 -9.11 4.92 -53.77 -0.26 -9.37 16 13 C 0.16 2.68 2.12 -67.89 -0.14 2.53 16 14 H 0.09 1.72 7.58 -51.93 -0.39 1.33 16 15 C -0.15 -2.69 5.65 -26.61 -0.15 -2.84 16 16 C 0.17 3.91 5.30 -3.71 -0.02 3.89 16 17 N -0.59 -13.82 2.99 -172.32 -0.52 -14.34 16 18 C -0.26 -6.82 9.58 -15.06 -0.14 -6.97 16 19 H 0.07 1.67 7.89 -52.48 -0.41 1.26 16 20 C 0.01 0.18 4.92 -17.43 -0.09 0.09 16 21 N -0.90 -25.27 11.20 55.49 0.62 -24.65 16 22 Si 0.91 20.83 29.59 -169.99 -5.03 15.80 16 23 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 24 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 26 C 0.12 2.33 6.14 -3.71 -0.02 2.31 16 27 C 0.08 1.25 3.14 -26.61 -0.08 1.17 16 28 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 29 O -0.57 -7.82 13.16 -35.23 -0.46 -8.29 16 30 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.09 0.43 8.12 -51.93 -0.42 0.01 16 32 H 0.09 0.25 8.14 -51.93 -0.42 -0.18 16 33 H 0.41 2.73 7.44 -40.82 -0.30 2.43 16 34 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.42 3.85 7.44 -40.82 -0.30 3.55 16 37 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.40 4.08 8.60 -40.82 -0.35 3.73 16 40 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 42 H 0.09 2.40 6.06 -51.93 -0.31 2.08 16 43 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 45 H 0.06 1.11 7.93 -51.93 -0.41 0.70 16 46 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 47 H 0.37 3.61 9.08 45.56 0.41 4.02 16 LS Contribution 393.50 15.07 5.93 5.93 Total: -1.00 -34.90 393.50 -7.02 -41.92 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: -6.29 Total: 10.74 kcal Atomic # 6 Polarization: 17.47 SS G_CDS: -0.60 Total: 16.87 kcal Atomic # 7 Polarization: -60.29 SS G_CDS: -0.84 Total: -61.13 kcal Atomic # 8 Polarization: -29.94 SS G_CDS: -0.20 Total: -30.13 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.03 Total: 15.80 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -34.90 -7.02 -41.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099894530.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.674 kcal (2) G-P(sol) polarization free energy of solvation -34.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds