Wall clock time and date at job start Wed Apr 1 2020 02:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36934 * 119.99931 * 2 1 4 4 H 1.07994 * 120.00392 * 202.33264 * 3 2 1 5 5 C 1.38819 * 119.99812 * 22.33010 * 3 2 1 6 6 N 1.31615 * 120.00169 * 11.37105 * 5 3 2 7 7 Si 1.86804 * 119.99754 * 191.36327 * 5 3 2 8 8 H 1.48497 * 109.47086 * 60.00446 * 7 5 3 9 9 H 1.48503 * 109.46875 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47144 * 300.00085 * 7 5 3 11 11 C 1.46503 * 119.99907 * 180.02562 * 2 1 3 12 12 C 1.52994 * 109.47102 * 269.99855 * 11 2 1 13 13 H 1.08998 * 109.47304 * 59.99928 * 12 11 2 14 14 O 1.42906 * 109.46913 * 300.00057 * 12 11 2 15 15 C 1.53003 * 109.47426 * 180.02562 * 12 11 2 16 16 N 1.46499 * 109.47179 * 184.99887 * 15 12 11 17 17 C 1.46503 * 119.99833 * 270.00080 * 16 15 12 18 18 C 1.34773 * 119.99808 * 90.00358 * 16 15 12 19 19 O 1.21281 * 120.00055 * 0.26994 * 18 16 15 20 20 C 1.50703 * 120.00037 * 179.97438 * 18 16 15 21 21 C 1.52997 * 109.47259 * 179.97438 * 20 18 16 22 22 C 1.52995 * 109.46972 * 179.97438 * 21 20 18 23 23 H 1.09004 * 110.53403 * 54.30630 * 22 21 20 24 24 N 1.47311 * 110.60430 * 291.46895 * 22 21 20 25 25 C 1.34863 * 106.43842 * 241.52424 * 24 22 21 26 26 O 1.21543 * 123.72442 * 179.97438 * 25 24 22 27 27 N 1.33792 * 112.50500 * 359.85994 * 25 24 22 28 28 C 1.34770 * 111.64077 * 0.09385 * 27 25 24 29 29 O 1.21235 * 127.15436 * 180.02562 * 28 27 25 30 30 H 1.08997 * 109.46726 * 274.20620 * 1 2 3 31 31 H 1.08997 * 109.46733 * 34.21316 * 1 2 3 32 32 H 1.08999 * 109.46889 * 154.21007 * 1 2 3 33 33 H 0.96997 * 120.00026 * 180.02562 * 6 5 3 34 34 H 1.09002 * 109.46534 * 150.00118 * 11 2 1 35 35 H 1.08998 * 109.46942 * 30.00235 * 11 2 1 36 36 H 0.96698 * 114.00147 * 299.99975 * 14 12 11 37 37 H 1.09004 * 109.46434 * 64.99993 * 15 12 11 38 38 H 1.08996 * 109.46806 * 305.00449 * 15 12 11 39 39 H 1.09007 * 109.46534 * 269.99796 * 17 16 15 40 40 H 1.09000 * 109.47423 * 29.99803 * 17 16 15 41 41 H 1.08997 * 109.46749 * 150.00474 * 17 16 15 42 42 H 1.09002 * 109.46883 * 299.99544 * 20 18 16 43 43 H 1.09004 * 109.46764 * 59.99268 * 20 18 16 44 44 H 1.08994 * 109.47267 * 300.00044 * 21 20 18 45 45 H 1.09003 * 109.46863 * 59.99801 * 21 20 18 46 46 H 0.96997 * 126.68384 * 61.44549 * 24 22 21 47 47 H 0.96993 * 124.17871 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1689 1.2211 -0.3554 5 6 1.5337 2.3430 0.4568 6 7 0.3841 2.2692 1.0935 7 14 2.3364 4.0049 0.1679 8 1 2.4911 4.2329 -1.2912 9 1 1.4845 5.0736 0.7489 10 1 3.6717 4.0291 0.8171 11 6 2.1976 -1.2688 -0.0006 12 6 2.4526 -1.7110 1.4417 13 1 1.5002 -1.8416 1.9555 14 8 3.2249 -0.7154 2.1157 15 6 3.2181 -3.0358 1.4412 16 7 3.3581 -3.5194 2.8169 17 6 4.5224 -3.1289 3.6158 18 6 2.4158 -4.3237 3.3476 19 8 1.4544 -4.6510 2.6845 20 6 2.5600 -4.8218 4.7626 21 6 1.3642 -5.7085 5.1155 22 6 1.5110 -6.2146 6.5518 23 1 1.6502 -5.3800 7.2390 24 7 2.6329 -7.1637 6.6550 25 6 2.1036 -8.3385 7.0531 26 8 2.7585 -9.3456 7.2376 27 7 0.7785 -8.2712 7.2245 28 6 0.3040 -7.0395 6.9525 29 8 -0.8484 -6.6683 7.0158 30 1 -0.3633 0.0754 1.0249 31 1 -0.3633 0.8498 -0.5778 32 1 -0.3633 -0.9253 -0.4471 33 1 -0.0465 3.0777 1.4123 34 1 3.1500 -1.1381 -0.5143 35 1 1.6085 -2.0281 -0.5148 36 1 4.0874 -0.5467 1.7123 37 1 4.2064 -2.8840 1.0070 38 1 2.6712 -3.7712 0.8513 39 1 5.3218 -3.8559 3.4723 40 1 4.8660 -2.1439 3.2998 41 1 4.2456 -3.0965 4.6695 42 1 3.4801 -5.3993 4.8525 43 1 2.5960 -3.9723 5.4448 44 1 0.4443 -5.1308 5.0257 45 1 1.3278 -6.5579 4.4333 46 1 3.5672 -6.9786 6.4712 47 1 0.2272 -9.0171 7.5085 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486355753.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:09:11 Heat of formation + Delta-G solvation = -101.192057 kcal Electronic energy + Delta-G solvation = -30277.060706 eV Core-core repulsion = 25883.025514 eV Total energy + Delta-G solvation = -4394.035192 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.178 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.77066 -40.03673 -39.03488 -37.45073 -36.81441 -35.36848 -34.99724 -34.41091 -32.66235 -31.35947 -29.87536 -28.23376 -26.87212 -25.89526 -25.45890 -23.77746 -23.05783 -22.02523 -21.62302 -20.42589 -19.18295 -18.81400 -17.45080 -17.31897 -16.96101 -16.83705 -16.30911 -16.24495 -16.08585 -15.85035 -15.18858 -15.00054 -14.71807 -14.57584 -14.49985 -14.03371 -13.68581 -13.44340 -13.19494 -13.01944 -12.82335 -12.67179 -12.55385 -12.23655 -11.82996 -11.57994 -11.44225 -11.39485 -11.12453 -10.83469 -10.82486 -10.70640 -10.63258 -10.47975 -10.25961 -10.01683 -10.01316 -9.89768 -9.85514 -9.55568 -8.51315 -8.38049 -6.66773 -5.63486 -3.08021 1.13671 1.94947 2.54283 2.57561 2.65094 2.96838 3.41642 3.46627 3.47745 3.49919 4.04271 4.30324 4.49558 4.54956 4.68798 4.76802 4.88281 4.96081 5.02026 5.15421 5.21195 5.35460 5.39936 5.49248 5.55365 5.57213 5.67160 5.73005 5.81281 5.95483 6.01694 6.09393 6.24856 6.42386 6.44507 6.56671 6.80552 6.86331 6.92155 7.35262 7.43386 7.66287 7.77932 7.86214 8.14517 8.39878 8.48888 9.30285 9.93223 10.42459 11.42365 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.020136 B = 0.002103 C = 0.002036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.183091 B =13310.296026 C =13750.234156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.592 5.592 3 C -0.241 4.241 4 H 0.064 0.936 5 C 0.002 3.998 6 N -0.907 5.907 7 Si 0.904 3.096 8 H -0.287 1.287 9 H -0.292 1.292 10 H -0.285 1.285 11 C 0.124 3.876 12 C 0.073 3.927 13 H 0.089 0.911 14 O -0.535 6.535 15 C 0.081 3.919 16 N -0.605 5.605 17 C 0.080 3.920 18 C 0.510 3.490 19 O -0.539 6.539 20 C -0.137 4.137 21 C -0.105 4.105 22 C 0.092 3.908 23 H 0.134 0.866 24 N -0.722 5.722 25 C 0.705 3.295 26 O -0.546 6.546 27 N -0.680 5.680 28 C 0.529 3.471 29 O -0.458 6.458 30 H 0.028 0.972 31 H 0.045 0.955 32 H -0.004 1.004 33 H 0.251 0.749 34 H 0.045 0.955 35 H 0.045 0.955 36 H 0.357 0.643 37 H 0.075 0.925 38 H 0.087 0.913 39 H 0.051 0.949 40 H 0.081 0.919 41 H 0.068 0.932 42 H 0.091 0.909 43 H 0.101 0.899 44 H 0.102 0.898 45 H 0.085 0.915 46 H 0.441 0.559 47 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.313 -18.535 11.384 23.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.313 5.313 3 C -0.371 4.371 4 H 0.082 0.918 5 C -0.196 4.196 6 N -0.553 5.553 7 Si 0.734 3.266 8 H -0.213 1.213 9 H -0.218 1.218 10 H -0.211 1.211 11 C -0.005 4.005 12 C 0.010 3.990 13 H 0.107 0.893 14 O -0.337 6.337 15 C -0.043 4.043 16 N -0.337 5.337 17 C -0.064 4.064 18 C 0.298 3.702 19 O -0.416 6.416 20 C -0.177 4.177 21 C -0.144 4.144 22 C -0.017 4.017 23 H 0.151 0.849 24 N -0.388 5.388 25 C 0.404 3.596 26 O -0.419 6.419 27 N -0.352 5.352 28 C 0.314 3.686 29 O -0.326 6.326 30 H 0.046 0.954 31 H 0.064 0.936 32 H 0.014 0.986 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.201 0.799 37 H 0.093 0.907 38 H 0.105 0.895 39 H 0.069 0.931 40 H 0.100 0.900 41 H 0.087 0.913 42 H 0.110 0.890 43 H 0.119 0.881 44 H 0.121 0.879 45 H 0.103 0.897 46 H 0.286 0.714 47 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges 6.881 -18.778 11.577 23.109 hybrid contribution 1.134 0.775 -0.226 1.393 sum 8.016 -18.003 11.351 22.742 Atomic orbital electron populations 1.20809 0.82435 0.95511 0.99329 1.43857 1.01830 1.00344 1.85308 1.18994 0.97684 0.85116 1.35330 0.91775 1.24995 0.97762 0.98346 0.98478 1.70054 1.17875 1.26878 1.40465 0.86360 0.78470 0.84143 0.77603 1.21335 1.21802 1.21103 1.21455 0.96468 0.89463 0.93152 1.23184 0.94036 0.84364 0.97453 0.89268 1.86692 1.32111 1.59912 1.55015 1.22458 1.01438 0.98439 0.81947 1.47774 1.22887 1.48365 1.14694 1.21825 0.87443 1.01316 0.95781 1.20436 0.82443 0.78549 0.88808 1.90734 1.30519 1.57956 1.62375 1.21647 0.99776 1.00902 0.95398 1.21575 1.00298 1.01003 0.91552 1.22216 0.84408 0.93922 1.01186 0.84879 1.45664 1.10613 1.10017 1.72494 1.15927 0.81522 0.84335 0.77772 1.91070 1.62746 1.31938 1.56152 1.44324 1.09930 1.15539 1.65379 1.20759 0.89866 0.82599 0.75328 1.90894 1.18342 1.75071 1.48277 0.95401 0.93596 0.98596 0.93895 0.93682 0.93684 0.79860 0.90710 0.89504 0.93088 0.90028 0.91302 0.89038 0.88076 0.87949 0.89684 0.71385 0.72449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.17 9.01 59.85 0.54 4.71 16 2 N -0.59 -14.81 2.87 -181.12 -0.52 -15.33 16 3 C -0.24 -6.51 9.02 -15.06 -0.14 -6.64 16 4 H 0.06 1.66 7.84 -52.49 -0.41 1.25 16 5 C 0.00 0.06 5.13 -17.43 -0.09 -0.03 16 6 N -0.91 -26.94 10.59 55.49 0.59 -26.35 16 7 Si 0.90 21.90 29.57 -169.99 -5.03 16.88 16 8 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 9 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 C 0.12 2.42 5.43 -4.04 -0.02 2.40 16 12 C 0.07 1.30 3.48 -26.73 -0.09 1.21 16 13 H 0.09 1.93 8.14 -51.93 -0.42 1.51 16 14 O -0.53 -10.08 11.43 -35.23 -0.40 -10.48 16 15 C 0.08 1.07 5.07 -4.04 -0.02 1.05 16 16 N -0.60 -7.01 2.84 -181.57 -0.52 -7.52 16 17 C 0.08 0.63 10.06 59.85 0.60 1.23 16 18 C 0.51 6.23 7.67 -10.99 -0.08 6.14 16 19 O -0.54 -8.86 15.56 5.56 0.09 -8.78 16 20 C -0.14 -0.94 4.17 -27.88 -0.12 -1.06 16 21 C -0.11 -0.78 4.26 -26.74 -0.11 -0.89 16 22 C 0.09 0.48 3.65 -68.21 -0.25 0.23 16 23 H 0.13 0.40 8.14 -51.93 -0.42 -0.02 16 24 N -0.72 -3.48 6.04 -59.10 -0.36 -3.83 16 25 C 0.71 5.43 9.00 -87.72 -0.79 4.64 16 26 O -0.55 -6.23 18.04 5.33 0.10 -6.14 16 27 N -0.68 -4.39 5.70 -15.71 -0.09 -4.48 16 28 C 0.53 4.00 8.14 -10.55 -0.09 3.92 16 29 O -0.46 -5.04 18.02 5.60 0.10 -4.94 16 30 H 0.03 0.77 7.42 -51.93 -0.39 0.39 16 31 H 0.05 1.24 7.19 -51.93 -0.37 0.87 16 32 H 0.00 -0.10 7.84 -51.93 -0.41 -0.51 16 33 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 34 H 0.04 0.81 8.03 -51.93 -0.42 0.40 16 35 H 0.04 0.83 7.86 -51.93 -0.41 0.42 16 36 H 0.36 5.51 9.04 45.56 0.41 5.93 16 37 H 0.07 0.82 8.07 -51.93 -0.42 0.40 16 38 H 0.09 1.24 7.42 -51.93 -0.39 0.85 16 39 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 40 H 0.08 0.71 7.11 -51.93 -0.37 0.35 16 41 H 0.07 0.42 6.44 -51.93 -0.33 0.09 16 42 H 0.09 0.37 7.51 -51.93 -0.39 -0.02 16 43 H 0.10 0.55 7.40 -51.93 -0.38 0.16 16 44 H 0.10 0.96 8.10 -51.93 -0.42 0.54 16 45 H 0.08 0.73 8.10 -51.93 -0.42 0.31 16 46 H 0.44 1.22 8.51 -40.82 -0.35 0.88 16 47 H 0.43 2.09 8.96 -40.82 -0.37 1.72 16 LS Contribution 391.67 15.07 5.90 5.90 Total: -1.00 -38.42 391.67 -7.03 -45.45 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -6.23 Total: 2.71 kcal Atomic # 6 Polarization: 17.57 SS G_CDS: -0.66 Total: 16.92 kcal Atomic # 7 Polarization: -56.62 SS G_CDS: -0.89 Total: -57.51 kcal Atomic # 8 Polarization: -30.22 SS G_CDS: -0.12 Total: -30.34 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.03 Total: 16.88 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -38.42 -7.03 -45.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486355753.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.746 kcal (2) G-P(sol) polarization free energy of solvation -38.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds