Wall clock time and date at job start Wed Apr 1 2020 02:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36931 * 119.99935 * 2 1 4 4 H 1.08003 * 120.00676 * 159.46884 * 3 2 1 5 5 C 1.38818 * 119.99909 * 339.74774 * 3 2 1 6 6 N 1.31618 * 119.99977 * 347.51410 * 5 3 2 7 7 Si 1.86805 * 119.99898 * 167.52136 * 5 3 2 8 8 H 1.48499 * 109.47018 * 89.99827 * 7 5 3 9 9 H 1.48496 * 109.46644 * 209.99425 * 7 5 3 10 10 H 1.48496 * 109.47129 * 329.99757 * 7 5 3 11 11 C 1.46501 * 120.00065 * 179.97438 * 2 1 3 12 12 C 1.52998 * 109.46894 * 270.00001 * 11 2 1 13 13 H 1.09001 * 109.47294 * 60.00614 * 12 11 2 14 14 O 1.42891 * 109.47428 * 299.99835 * 12 11 2 15 15 C 1.53005 * 109.46956 * 179.97438 * 12 11 2 16 16 N 1.46497 * 109.47324 * 185.00181 * 15 12 11 17 17 C 1.46506 * 120.00085 * 270.00470 * 16 15 12 18 18 C 1.34773 * 119.99988 * 90.00012 * 16 15 12 19 19 O 1.21285 * 120.00155 * 359.97438 * 18 16 15 20 20 C 1.50700 * 119.99964 * 180.02562 * 18 16 15 21 21 C 1.53000 * 109.47187 * 179.97438 * 20 18 16 22 22 C 1.52995 * 109.47478 * 179.97438 * 21 20 18 23 23 H 1.09008 * 110.53565 * 307.83265 * 22 21 20 24 24 N 1.47311 * 110.59974 * 70.82475 * 22 21 20 25 25 C 1.34530 * 106.61944 * 118.52737 * 24 22 21 26 26 O 1.21534 * 123.77438 * 179.97438 * 25 24 22 27 27 N 1.33795 * 112.45339 * 0.02562 * 25 24 22 28 28 C 1.34765 * 111.65067 * 359.97438 * 27 25 24 29 29 O 1.21225 * 127.15966 * 179.97438 * 28 27 25 30 30 H 1.09007 * 109.46691 * 84.89587 * 1 2 3 31 31 H 1.08995 * 109.47243 * 204.88880 * 1 2 3 32 32 H 1.08997 * 109.47337 * 324.89300 * 1 2 3 33 33 H 0.96994 * 120.00144 * 180.02562 * 6 5 3 34 34 H 1.08995 * 109.47123 * 30.00252 * 11 2 1 35 35 H 1.09001 * 109.46649 * 150.00220 * 11 2 1 36 36 H 0.96696 * 114.00310 * 300.00567 * 14 12 11 37 37 H 1.09002 * 109.47124 * 305.00475 * 15 12 11 38 38 H 1.09002 * 109.46994 * 65.00147 * 15 12 11 39 39 H 1.08993 * 109.47367 * 89.99560 * 17 16 15 40 40 H 1.08992 * 109.47024 * 209.99973 * 17 16 15 41 41 H 1.09003 * 109.46617 * 329.99756 * 17 16 15 42 42 H 1.08994 * 109.47262 * 299.99702 * 20 18 16 43 43 H 1.09000 * 109.47573 * 60.00316 * 20 18 16 44 44 H 1.08999 * 109.47284 * 300.00269 * 21 20 18 45 45 H 1.09008 * 109.47106 * 60.00325 * 21 20 18 46 46 H 0.96997 * 126.69199 * 298.51188 * 24 22 21 47 47 H 0.97006 * 124.17018 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1782 1.2157 0.3280 5 6 1.5199 2.3509 -0.4162 6 7 0.3612 2.2869 -1.0372 7 14 2.3170 4.0095 -0.0948 8 1 3.1920 4.3683 -1.2398 9 1 1.2625 5.0427 0.0651 10 1 3.1302 3.9358 1.1455 11 6 2.1975 -1.2687 0.0006 12 6 2.4525 -1.7097 1.4433 13 1 1.5001 -1.8399 1.9571 14 8 3.2247 -0.7136 2.1165 15 6 3.2170 -3.0351 1.4439 16 7 3.3568 -3.5176 2.8200 17 6 4.5216 -3.1272 3.6183 18 6 2.4140 -4.3205 3.3517 19 8 1.4494 -4.6433 2.6910 20 6 2.5576 -4.8163 4.7675 21 6 1.3612 -5.7020 5.1216 22 6 1.5073 -6.2059 6.5587 23 1 2.4840 -6.6674 6.7047 24 7 1.3018 -5.1061 7.5170 25 6 0.2354 -5.4419 8.2652 26 8 -0.2079 -4.7484 9.1594 27 7 -0.2819 -6.6252 7.9156 28 6 0.3997 -7.1842 6.8963 29 8 0.1744 -8.2484 6.3612 30 1 -0.3633 0.0914 -1.0237 31 1 -0.3633 -0.9322 0.4325 32 1 -0.3634 0.8407 0.5910 33 1 -0.0786 3.1008 -1.3284 34 1 1.6085 -2.0286 -0.5129 35 1 3.1499 -1.1385 -0.5133 36 1 4.0872 -0.5452 1.7129 37 1 2.6693 -3.7707 0.8548 38 1 4.2053 -2.8846 1.0094 39 1 4.3005 -2.2059 4.1571 40 1 4.7550 -3.9179 4.3312 41 1 5.3758 -2.9673 2.9604 42 1 3.4773 -5.3941 4.8586 43 1 2.5937 -3.9660 5.4485 44 1 0.4417 -5.1239 5.0305 45 1 1.3247 -6.5525 4.4407 46 1 1.8322 -4.2976 7.5938 47 1 -1.0530 -7.0303 8.3427 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486355754.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:09:15 Heat of formation + Delta-G solvation = -101.626892 kcal Electronic energy + Delta-G solvation = -30244.352934 eV Core-core repulsion = 25850.298886 eV Total energy + Delta-G solvation = -4394.054048 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.178 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.80031 -40.10768 -39.05635 -37.54508 -36.83259 -35.42759 -35.01859 -34.49439 -32.71909 -31.40453 -29.92107 -28.26801 -26.93625 -25.91758 -25.49417 -23.80439 -23.06778 -22.07346 -21.67732 -20.47493 -19.24569 -18.83987 -17.45610 -17.37468 -16.97840 -16.87741 -16.38246 -16.27789 -16.13161 -15.77247 -15.40213 -14.99094 -14.66401 -14.63911 -14.60657 -14.15904 -13.69365 -13.40225 -13.23812 -13.05858 -12.90927 -12.80220 -12.59956 -12.28008 -11.87089 -11.63885 -11.53473 -11.41927 -11.04594 -10.83922 -10.82044 -10.72895 -10.67428 -10.57190 -10.30441 -10.05140 -10.01475 -9.93288 -9.84979 -9.67746 -8.63113 -8.38137 -6.67803 -5.64760 -3.08295 1.11127 1.94984 2.51647 2.55778 2.62638 2.90313 3.40953 3.46246 3.47818 3.50191 3.98745 4.24317 4.44780 4.54080 4.60027 4.71318 4.85253 4.89095 4.93809 5.07315 5.16211 5.24793 5.35487 5.45217 5.50825 5.56020 5.61794 5.67591 5.76677 5.87424 5.95845 6.04142 6.26043 6.41285 6.43336 6.54662 6.74045 6.84388 6.89578 7.27672 7.47087 7.67540 7.77733 7.87584 8.07453 8.24893 8.45463 9.29717 9.93024 10.41301 11.40672 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.015481 B = 0.002188 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.218811 B =12793.562283 C =13242.259926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.594 5.594 3 C -0.236 4.236 4 H 0.068 0.932 5 C -0.006 4.006 6 N -0.913 5.913 7 Si 0.905 3.095 8 H -0.290 1.290 9 H -0.292 1.292 10 H -0.281 1.281 11 C 0.125 3.875 12 C 0.072 3.928 13 H 0.089 0.911 14 O -0.543 6.543 15 C 0.082 3.918 16 N -0.606 5.606 17 C 0.080 3.920 18 C 0.510 3.490 19 O -0.538 6.538 20 C -0.137 4.137 21 C -0.106 4.106 22 C 0.092 3.908 23 H 0.133 0.867 24 N -0.721 5.721 25 C 0.705 3.295 26 O -0.542 6.542 27 N -0.680 5.680 28 C 0.530 3.470 29 O -0.462 6.462 30 H 0.029 0.971 31 H -0.006 1.006 32 H 0.045 0.955 33 H 0.251 0.749 34 H 0.045 0.955 35 H 0.049 0.951 36 H 0.360 0.640 37 H 0.089 0.911 38 H 0.076 0.924 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.070 0.930 42 H 0.098 0.902 43 H 0.094 0.906 44 H 0.087 0.913 45 H 0.100 0.900 46 H 0.442 0.558 47 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.142 -19.715 15.879 26.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.316 5.316 3 C -0.366 4.366 4 H 0.086 0.914 5 C -0.203 4.203 6 N -0.560 5.560 7 Si 0.735 3.265 8 H -0.217 1.217 9 H -0.218 1.218 10 H -0.206 1.206 11 C -0.004 4.004 12 C 0.008 3.992 13 H 0.107 0.893 14 O -0.346 6.346 15 C -0.041 4.041 16 N -0.338 5.338 17 C -0.063 4.063 18 C 0.298 3.702 19 O -0.415 6.415 20 C -0.177 4.177 21 C -0.145 4.145 22 C -0.017 4.017 23 H 0.150 0.850 24 N -0.387 5.387 25 C 0.404 3.596 26 O -0.416 6.416 27 N -0.352 5.352 28 C 0.315 3.685 29 O -0.331 6.331 30 H 0.047 0.953 31 H 0.013 0.987 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.205 0.795 37 H 0.107 0.893 38 H 0.095 0.905 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.089 0.911 42 H 0.117 0.883 43 H 0.113 0.887 44 H 0.106 0.894 45 H 0.118 0.882 46 H 0.287 0.713 47 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges 7.685 -19.909 15.970 26.655 hybrid contribution 0.805 1.209 0.039 1.453 sum 8.490 -18.700 16.009 26.040 Atomic orbital electron populations 1.20809 0.82484 0.95420 0.99344 1.43756 1.01821 1.00381 1.85641 1.19128 0.96595 0.84981 1.35881 0.91411 1.24976 0.97696 0.98351 0.99317 1.70084 1.17304 1.26548 1.42035 0.86252 0.78200 0.84178 0.77860 1.21697 1.21774 1.20624 1.21298 0.96771 0.89577 0.92738 1.23197 0.93943 0.84657 0.97361 0.89314 1.86620 1.32378 1.59999 1.55651 1.22410 1.01578 0.98206 0.81902 1.47767 1.22873 1.48502 1.14690 1.21825 0.87805 1.00692 0.95988 1.20439 0.82484 0.78538 0.88786 1.90745 1.30316 1.57932 1.62468 1.21653 0.99977 1.01011 0.95067 1.21590 0.99816 1.01514 0.91610 1.22199 1.00227 0.87148 0.92078 0.84997 1.45603 1.32758 1.24019 1.36325 1.15851 0.80738 0.81000 0.82047 1.91084 1.64436 1.54141 1.31901 1.44332 1.33513 1.21409 1.35902 1.20748 0.83098 0.86045 0.78578 1.90873 1.68923 1.20377 1.52879 0.95255 0.98701 0.93673 0.93922 0.93720 0.93281 0.79462 0.89301 0.90521 0.91632 0.91612 0.91106 0.88343 0.88720 0.89434 0.88152 0.71276 0.72423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.23 8.96 59.85 0.54 4.77 16 2 N -0.59 -15.01 2.88 -181.12 -0.52 -15.53 16 3 C -0.24 -6.43 9.10 -15.06 -0.14 -6.57 16 4 H 0.07 1.76 7.59 -52.48 -0.40 1.36 16 5 C -0.01 -0.18 5.12 -17.43 -0.09 -0.27 16 6 N -0.91 -27.21 10.52 55.49 0.58 -26.62 16 7 Si 0.90 22.14 29.57 -169.99 -5.03 17.11 16 8 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 9 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 C 0.13 2.46 5.36 -4.04 -0.02 2.44 16 12 C 0.07 1.21 3.48 -26.73 -0.09 1.11 16 13 H 0.09 1.78 8.14 -51.93 -0.42 1.36 16 14 O -0.54 -9.37 11.96 -35.23 -0.42 -9.79 16 15 C 0.08 1.04 5.11 -4.04 -0.02 1.01 16 16 N -0.61 -6.46 2.84 -181.57 -0.52 -6.97 16 17 C 0.08 0.55 9.89 59.85 0.59 1.15 16 18 C 0.51 5.78 7.67 -10.99 -0.08 5.70 16 19 O -0.54 -8.44 15.56 5.55 0.09 -8.36 16 20 C -0.14 -0.83 4.19 -27.88 -0.12 -0.94 16 21 C -0.11 -0.71 4.25 -26.73 -0.11 -0.82 16 22 C 0.09 0.43 3.64 -68.21 -0.25 0.18 16 23 H 0.13 0.24 8.14 -51.92 -0.42 -0.19 16 24 N -0.72 -3.71 6.06 -59.19 -0.36 -4.07 16 25 C 0.70 5.74 8.99 -88.01 -0.79 4.95 16 26 O -0.54 -6.62 18.04 5.34 0.10 -6.52 16 27 N -0.68 -4.43 5.70 -15.79 -0.09 -4.52 16 28 C 0.53 3.74 8.14 -10.55 -0.09 3.66 16 29 O -0.46 -4.67 18.02 5.60 0.10 -4.57 16 30 H 0.03 0.81 7.41 -51.92 -0.39 0.42 16 31 H -0.01 -0.13 8.03 -51.93 -0.42 -0.55 16 32 H 0.04 1.26 7.13 -51.93 -0.37 0.89 16 33 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 34 H 0.04 0.85 8.07 -51.93 -0.42 0.43 16 35 H 0.05 0.91 8.04 -51.93 -0.42 0.49 16 36 H 0.36 5.09 9.05 45.56 0.41 5.50 16 37 H 0.09 1.21 7.42 -51.93 -0.39 0.83 16 38 H 0.08 0.78 7.89 -51.93 -0.41 0.37 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.26 6.44 -51.93 -0.33 -0.08 16 41 H 0.07 0.42 7.89 -51.93 -0.41 0.01 16 42 H 0.10 0.31 7.40 -51.93 -0.38 -0.08 16 43 H 0.09 0.44 7.65 -51.93 -0.40 0.04 16 44 H 0.09 0.78 8.10 -51.93 -0.42 0.36 16 45 H 0.10 0.78 8.10 -51.92 -0.42 0.36 16 46 H 0.44 1.53 8.61 -40.82 -0.35 1.18 16 47 H 0.43 2.13 8.96 -40.82 -0.37 1.77 16 LS Contribution 392.93 15.07 5.92 5.92 Total: -1.00 -38.74 392.93 -7.10 -45.83 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -6.28 Total: 1.73 kcal Atomic # 6 Polarization: 17.03 SS G_CDS: -0.67 Total: 16.35 kcal Atomic # 7 Polarization: -56.81 SS G_CDS: -0.90 Total: -57.71 kcal Atomic # 8 Polarization: -29.10 SS G_CDS: -0.14 Total: -29.24 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.03 Total: 17.11 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -38.74 -7.10 -45.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486355754.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.792 kcal (2) G-P(sol) polarization free energy of solvation -38.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds