Wall clock time and date at job start Wed Apr 1 2020 02:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36931 * 119.99935 * 2 1 4 4 H 1.08003 * 120.00676 * 159.46884 * 3 2 1 5 5 C 1.38818 * 119.99909 * 339.74774 * 3 2 1 6 6 N 1.31618 * 119.99977 * 347.51410 * 5 3 2 7 7 Si 1.86805 * 119.99898 * 167.52136 * 5 3 2 8 8 H 1.48499 * 109.47018 * 89.99827 * 7 5 3 9 9 H 1.48496 * 109.46644 * 209.99425 * 7 5 3 10 10 H 1.48496 * 109.47129 * 329.99757 * 7 5 3 11 11 C 1.46501 * 120.00065 * 179.97438 * 2 1 3 12 12 C 1.52998 * 109.46894 * 270.00001 * 11 2 1 13 13 H 1.09001 * 109.47294 * 60.00614 * 12 11 2 14 14 O 1.42891 * 109.47428 * 299.99835 * 12 11 2 15 15 C 1.53005 * 109.46956 * 179.97438 * 12 11 2 16 16 N 1.46497 * 109.47324 * 185.00181 * 15 12 11 17 17 C 1.46506 * 120.00085 * 270.00470 * 16 15 12 18 18 C 1.34773 * 119.99988 * 90.00012 * 16 15 12 19 19 O 1.21285 * 120.00155 * 359.97438 * 18 16 15 20 20 C 1.50700 * 119.99964 * 180.02562 * 18 16 15 21 21 C 1.53000 * 109.47187 * 179.97438 * 20 18 16 22 22 C 1.52995 * 109.47478 * 179.97438 * 21 20 18 23 23 H 1.09008 * 110.53565 * 307.83265 * 22 21 20 24 24 N 1.47311 * 110.59974 * 70.82475 * 22 21 20 25 25 C 1.34530 * 106.61944 * 118.52737 * 24 22 21 26 26 O 1.21534 * 123.77438 * 179.97438 * 25 24 22 27 27 N 1.33795 * 112.45339 * 0.02562 * 25 24 22 28 28 C 1.34765 * 111.65067 * 359.97438 * 27 25 24 29 29 O 1.21225 * 127.15966 * 179.97438 * 28 27 25 30 30 H 1.09007 * 109.46691 * 84.89587 * 1 2 3 31 31 H 1.08995 * 109.47243 * 204.88880 * 1 2 3 32 32 H 1.08997 * 109.47337 * 324.89300 * 1 2 3 33 33 H 0.96994 * 120.00144 * 180.02562 * 6 5 3 34 34 H 1.08995 * 109.47123 * 30.00252 * 11 2 1 35 35 H 1.09001 * 109.46649 * 150.00220 * 11 2 1 36 36 H 0.96696 * 114.00310 * 300.00567 * 14 12 11 37 37 H 1.09002 * 109.47124 * 305.00475 * 15 12 11 38 38 H 1.09002 * 109.46994 * 65.00147 * 15 12 11 39 39 H 1.08993 * 109.47367 * 89.99560 * 17 16 15 40 40 H 1.08992 * 109.47024 * 209.99973 * 17 16 15 41 41 H 1.09003 * 109.46617 * 329.99756 * 17 16 15 42 42 H 1.08994 * 109.47262 * 299.99702 * 20 18 16 43 43 H 1.09000 * 109.47573 * 60.00316 * 20 18 16 44 44 H 1.08999 * 109.47284 * 300.00269 * 21 20 18 45 45 H 1.09008 * 109.47106 * 60.00325 * 21 20 18 46 46 H 0.96997 * 126.69199 * 298.51188 * 24 22 21 47 47 H 0.97006 * 124.17018 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1782 1.2157 0.3280 5 6 1.5199 2.3509 -0.4162 6 7 0.3612 2.2869 -1.0372 7 14 2.3170 4.0095 -0.0948 8 1 3.1920 4.3683 -1.2398 9 1 1.2625 5.0427 0.0651 10 1 3.1302 3.9358 1.1455 11 6 2.1975 -1.2687 0.0006 12 6 2.4525 -1.7097 1.4433 13 1 1.5001 -1.8399 1.9571 14 8 3.2247 -0.7136 2.1165 15 6 3.2170 -3.0351 1.4439 16 7 3.3568 -3.5176 2.8200 17 6 4.5216 -3.1272 3.6183 18 6 2.4140 -4.3205 3.3517 19 8 1.4494 -4.6433 2.6910 20 6 2.5576 -4.8163 4.7675 21 6 1.3612 -5.7020 5.1216 22 6 1.5073 -6.2059 6.5587 23 1 2.4840 -6.6674 6.7047 24 7 1.3018 -5.1061 7.5170 25 6 0.2354 -5.4419 8.2652 26 8 -0.2079 -4.7484 9.1594 27 7 -0.2819 -6.6252 7.9156 28 6 0.3997 -7.1842 6.8963 29 8 0.1744 -8.2484 6.3612 30 1 -0.3633 0.0914 -1.0237 31 1 -0.3633 -0.9322 0.4325 32 1 -0.3634 0.8407 0.5910 33 1 -0.0786 3.1008 -1.3284 34 1 1.6085 -2.0286 -0.5129 35 1 3.1499 -1.1385 -0.5133 36 1 4.0872 -0.5452 1.7129 37 1 2.6693 -3.7707 0.8548 38 1 4.2053 -2.8846 1.0094 39 1 4.3005 -2.2059 4.1571 40 1 4.7550 -3.9179 4.3312 41 1 5.3758 -2.9673 2.9604 42 1 3.4773 -5.3941 4.8586 43 1 2.5937 -3.9660 5.4485 44 1 0.4417 -5.1239 5.0305 45 1 1.3247 -6.5525 4.4407 46 1 1.8322 -4.2976 7.5938 47 1 -1.0530 -7.0303 8.3427 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486355754.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:09:14 Heat of formation + Delta-G solvation = -136.009406 kcal Electronic energy + Delta-G solvation = -30245.843872 eV Core-core repulsion = 25850.298886 eV Total energy + Delta-G solvation = -4395.544986 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.178 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.37824 -40.98832 -39.74052 -38.90565 -37.54770 -36.82935 -35.87933 -35.62750 -33.40179 -33.19452 -31.22578 -29.02165 -28.06970 -27.72861 -26.64843 -24.68903 -23.83548 -23.24964 -22.30570 -22.13412 -20.06560 -19.43120 -18.80578 -18.15653 -18.00921 -17.55248 -17.46691 -17.14156 -16.88276 -16.72383 -16.46899 -16.38482 -16.10628 -15.62087 -15.32794 -15.25488 -15.01534 -14.91544 -14.37231 -14.06096 -13.80396 -13.61194 -13.57308 -13.26523 -13.09775 -12.87864 -12.74983 -12.57533 -12.45930 -12.24791 -12.17348 -12.04532 -12.00416 -11.88513 -11.82542 -11.50811 -11.38373 -11.21911 -10.80602 -10.56344 -10.52172 -9.52303 -8.69545 -7.76777 -5.22415 0.51656 1.42320 1.47174 1.50229 1.58994 1.69917 1.94132 2.07884 2.22067 2.54955 2.93006 3.36407 3.42255 3.57080 3.77927 3.84917 3.87582 4.02160 4.15166 4.25758 4.32001 4.37770 4.41872 4.53547 4.58160 4.66756 4.75400 4.80362 4.85955 4.94271 4.96599 5.05006 5.12828 5.14540 5.22990 5.35083 5.60467 5.62700 5.71843 5.80272 5.87088 6.35274 6.36909 6.50072 7.04237 7.10791 7.19386 7.26063 7.89742 8.35044 9.27945 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.015481 B = 0.002188 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.218811 B =12793.562283 C =13242.259926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.180 3.820 2 N -0.613 5.613 3 C -0.233 4.233 4 H 0.083 0.917 5 C -0.072 4.072 6 N -0.951 5.951 7 Si 0.971 3.029 8 H -0.283 1.283 9 H -0.302 1.302 10 H -0.268 1.268 11 C 0.120 3.880 12 C 0.092 3.908 13 H 0.050 0.950 14 O -0.557 6.557 15 C 0.093 3.907 16 N -0.607 5.607 17 C 0.074 3.926 18 C 0.497 3.503 19 O -0.593 6.593 20 C -0.127 4.127 21 C -0.101 4.101 22 C 0.108 3.892 23 H 0.179 0.821 24 N -0.703 5.703 25 C 0.703 3.297 26 O -0.587 6.587 27 N -0.676 5.676 28 C 0.530 3.470 29 O -0.495 6.495 30 H 0.005 0.995 31 H 0.015 0.985 32 H 0.014 0.986 33 H 0.243 0.757 34 H 0.047 0.953 35 H 0.066 0.934 36 H 0.376 0.624 37 H 0.074 0.926 38 H 0.109 0.891 39 H 0.056 0.944 40 H 0.104 0.896 41 H 0.084 0.916 42 H 0.144 0.856 43 H 0.116 0.884 44 H 0.057 0.943 45 H 0.089 0.911 46 H 0.453 0.547 47 H 0.438 0.562 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.923 -20.588 17.379 29.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.336 5.336 3 C -0.363 4.363 4 H 0.101 0.899 5 C -0.264 4.264 6 N -0.600 5.600 7 Si 0.800 3.200 8 H -0.210 1.210 9 H -0.229 1.229 10 H -0.193 1.193 11 C -0.007 4.007 12 C 0.029 3.971 13 H 0.068 0.932 14 O -0.362 6.362 15 C -0.032 4.032 16 N -0.338 5.338 17 C -0.068 4.068 18 C 0.287 3.713 19 O -0.474 6.474 20 C -0.166 4.166 21 C -0.140 4.140 22 C 0.000 4.000 23 H 0.196 0.804 24 N -0.369 5.369 25 C 0.402 3.598 26 O -0.463 6.463 27 N -0.346 5.346 28 C 0.317 3.683 29 O -0.366 6.366 30 H 0.023 0.977 31 H 0.033 0.967 32 H 0.033 0.967 33 H 0.053 0.947 34 H 0.065 0.935 35 H 0.084 0.916 36 H 0.224 0.776 37 H 0.093 0.907 38 H 0.127 0.873 39 H 0.075 0.925 40 H 0.123 0.877 41 H 0.103 0.897 42 H 0.162 0.838 43 H 0.135 0.865 44 H 0.076 0.924 45 H 0.107 0.893 46 H 0.300 0.700 47 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges 11.564 -20.805 17.491 29.539 hybrid contribution -0.352 1.405 -0.445 1.515 sum 11.212 -19.400 17.045 28.154 Atomic orbital electron populations 1.20478 0.83610 0.95042 0.97379 1.44018 1.01644 1.02005 1.85947 1.19560 0.97056 0.85663 1.34019 0.89939 1.25819 0.98585 1.01965 1.00079 1.70269 1.19025 1.26752 1.43950 0.85201 0.77022 0.79665 0.78133 1.21024 1.22942 1.19319 1.21560 0.96834 0.87302 0.94987 1.22688 0.93318 0.86920 0.94150 0.93197 1.86580 1.33415 1.60344 1.55898 1.22105 1.02252 0.95087 0.83741 1.47897 1.23921 1.47876 1.14145 1.22104 0.86487 1.01706 0.96497 1.21443 0.81508 0.77911 0.90478 1.90726 1.32525 1.59940 1.64233 1.21722 1.01320 1.02017 0.91562 1.21460 0.99135 1.00908 0.92541 1.22249 1.01272 0.86111 0.90394 0.80382 1.45557 1.31639 1.24457 1.35279 1.15978 0.81085 0.80898 0.81818 1.91058 1.65831 1.55442 1.34014 1.44313 1.33574 1.20989 1.35732 1.21107 0.83352 0.85876 0.77988 1.90864 1.69882 1.21971 1.53833 0.97711 0.96668 0.96692 0.94742 0.93499 0.91594 0.77630 0.90713 0.87279 0.92546 0.87733 0.89731 0.83831 0.86549 0.92444 0.89263 0.69985 0.71893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.61 8.96 127.77 1.15 10.76 16 2 N -0.61 -31.13 2.88 -726.94 -2.09 -33.23 16 3 C -0.23 -12.57 9.10 84.04 0.76 -11.80 16 4 H 0.08 4.12 7.59 -2.91 -0.02 4.10 16 5 C -0.07 -4.07 5.12 84.86 0.43 -3.64 16 6 N -0.95 -58.25 10.52 21.65 0.23 -58.02 16 7 Si 0.97 45.69 29.57 68.60 2.03 47.72 16 8 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 9 H -0.30 -14.64 7.11 99.48 0.71 -13.93 16 10 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 11 C 0.12 4.63 5.36 86.38 0.46 5.09 16 12 C 0.09 3.00 3.48 30.60 0.11 3.11 16 13 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 14 O -0.56 -18.04 11.96 -148.98 -1.78 -19.82 16 15 C 0.09 2.13 5.11 86.38 0.44 2.57 16 16 N -0.61 -11.18 2.84 -846.75 -2.40 -13.59 16 17 C 0.07 0.67 9.89 127.77 1.26 1.94 16 18 C 0.50 10.28 7.67 87.66 0.67 10.95 16 19 O -0.59 -18.73 15.56 -3.05 -0.05 -18.78 16 20 C -0.13 -1.04 4.19 29.85 0.13 -0.92 16 21 C -0.10 -1.15 4.25 30.59 0.13 -1.02 16 22 C 0.11 0.67 3.64 44.37 0.16 0.83 16 23 H 0.18 -0.36 8.14 -2.38 -0.02 -0.38 16 24 N -0.70 -5.38 6.06 -459.60 -2.79 -8.16 16 25 C 0.70 10.69 8.99 179.44 1.61 12.31 16 26 O -0.59 -14.18 18.04 -3.82 -0.07 -14.25 16 27 N -0.68 -8.32 5.70 -441.13 -2.52 -10.84 16 28 C 0.53 6.78 8.14 87.94 0.72 7.50 16 29 O -0.49 -9.68 18.02 -2.86 -0.05 -9.73 16 30 H 0.00 0.27 7.41 -2.38 -0.02 0.25 16 31 H 0.01 0.71 8.03 -2.39 -0.02 0.69 16 32 H 0.01 0.84 7.13 -2.39 -0.02 0.83 16 33 H 0.24 14.57 8.31 -92.71 -0.77 13.80 16 34 H 0.05 1.77 8.07 -2.39 -0.02 1.75 16 35 H 0.07 2.31 8.04 -2.39 -0.02 2.29 16 36 H 0.38 9.43 9.05 -74.06 -0.67 8.76 16 37 H 0.07 1.97 7.42 -2.39 -0.02 1.96 16 38 H 0.11 1.81 7.89 -2.39 -0.02 1.79 16 39 H 0.06 0.66 8.14 -2.39 -0.02 0.65 16 40 H 0.10 0.16 6.44 -2.39 -0.02 0.14 16 41 H 0.08 0.58 7.89 -2.39 -0.02 0.56 16 42 H 0.14 -0.04 7.40 -2.39 -0.02 -0.06 16 43 H 0.12 0.52 7.65 -2.39 -0.02 0.50 16 44 H 0.06 1.02 8.10 -2.39 -0.02 1.00 16 45 H 0.09 1.28 8.10 -2.38 -0.02 1.26 16 46 H 0.45 1.63 8.61 -92.71 -0.80 0.83 16 47 H 0.44 4.29 8.96 -92.70 -0.83 3.46 16 Total: -1.00 -89.47 392.93 -2.72 -92.19 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -1.27 Total: 8.83 kcal Atomic # 6 Polarization: 29.64 SS G_CDS: 8.04 Total: 37.67 kcal Atomic # 7 Polarization: -114.26 SS G_CDS: -9.57 Total: -123.83 kcal Atomic # 8 Polarization: -60.63 SS G_CDS: -1.95 Total: -62.58 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Total: -89.47 -2.72 -92.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486355754.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.824 kcal (2) G-P(sol) polarization free energy of solvation -89.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds