Wall clock time and date at job start Wed Apr 1 2020 02:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36939 * 119.99857 * 2 1 4 4 H 1.07997 * 120.00352 * 321.92049 * 3 2 1 5 5 C 1.38818 * 120.00038 * 141.92119 * 3 2 1 6 6 N 1.31614 * 119.99976 * 157.19098 * 5 3 2 7 7 Si 1.86800 * 119.99582 * 337.19184 * 5 3 2 8 8 H 1.48504 * 109.46921 * 95.67848 * 7 5 3 9 9 H 1.48502 * 109.46814 * 215.67214 * 7 5 3 10 10 H 1.48495 * 109.47626 * 335.67393 * 7 5 3 11 11 C 1.46497 * 120.00198 * 180.02562 * 2 1 3 12 12 C 1.52997 * 109.47244 * 89.99512 * 11 2 1 13 13 H 1.08994 * 109.47344 * 305.00057 * 12 11 2 14 14 O 1.42897 * 109.47039 * 65.00685 * 12 11 2 15 15 C 1.52999 * 109.47065 * 184.99971 * 12 11 2 16 16 N 1.46501 * 109.47454 * 179.97438 * 15 12 11 17 17 C 1.46496 * 119.99963 * 270.00570 * 16 15 12 18 18 C 1.34779 * 119.99534 * 89.99884 * 16 15 12 19 19 O 1.21273 * 120.00178 * 0.02562 * 18 16 15 20 20 C 1.50697 * 119.99692 * 180.02562 * 18 16 15 21 21 C 1.52999 * 109.47446 * 180.02562 * 20 18 16 22 22 C 1.52994 * 109.47677 * 180.02562 * 21 20 18 23 23 H 1.09003 * 110.53467 * 55.70158 * 22 21 20 24 24 N 1.47312 * 110.60187 * 292.87541 * 22 21 20 25 25 C 1.34524 * 106.61953 * 241.47191 * 24 22 21 26 26 O 1.21535 * 123.77282 * 179.97438 * 25 24 22 27 27 N 1.33796 * 112.45902 * 359.97438 * 25 24 22 28 28 C 1.35117 * 111.68134 * 359.91433 * 27 25 24 29 29 O 1.21243 * 127.33151 * 180.09673 * 28 27 25 30 30 H 1.09006 * 109.46951 * 265.68462 * 1 2 3 31 31 H 1.08995 * 109.47098 * 25.68223 * 1 2 3 32 32 H 1.08994 * 109.47147 * 145.68759 * 1 2 3 33 33 H 0.97003 * 119.99657 * 180.02562 * 6 5 3 34 34 H 1.09004 * 109.46885 * 329.99320 * 11 2 1 35 35 H 1.09004 * 109.47016 * 210.00207 * 11 2 1 36 36 H 0.96700 * 114.00535 * 59.99669 * 14 12 11 37 37 H 1.09004 * 109.47652 * 300.00042 * 15 12 11 38 38 H 1.09003 * 109.47436 * 60.00290 * 15 12 11 39 39 H 1.08996 * 109.47390 * 89.99990 * 17 16 15 40 40 H 1.09010 * 109.46664 * 209.99733 * 17 16 15 41 41 H 1.08992 * 109.47240 * 329.99158 * 17 16 15 42 42 H 1.08998 * 109.47295 * 300.00524 * 20 18 16 43 43 H 1.09001 * 109.46976 * 60.00314 * 20 18 16 44 44 H 1.08998 * 109.47279 * 300.00506 * 21 20 18 45 45 H 1.09001 * 109.46799 * 60.00178 * 21 20 18 46 46 H 0.97003 * 126.68967 * 61.43050 * 24 22 21 47 47 H 0.97000 * 124.18196 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 1.7821 2.0217 -0.5768 5 6 3.3163 1.3139 0.7414 6 7 4.2021 2.2331 0.4211 7 14 3.6287 0.1814 2.1938 8 1 4.4688 -0.9628 1.7575 9 1 4.3325 0.9322 3.2644 10 1 2.3335 -0.3254 2.7140 11 6 2.1975 -1.2687 -0.0006 12 6 2.4525 -1.7098 -1.4432 13 1 1.5062 -1.7541 -1.9822 14 8 3.3209 -0.7717 -2.0817 15 6 3.1060 -3.0931 -1.4456 16 7 3.3496 -3.5159 -2.8270 17 6 2.3247 -4.2688 -3.5541 18 6 4.5166 -3.2119 -3.4288 19 8 5.3652 -2.5889 -2.8267 20 6 4.7670 -3.6462 -4.8500 21 6 6.1558 -3.1781 -5.2892 22 6 6.4098 -3.6184 -6.7323 23 1 5.6212 -3.2505 -7.3887 24 7 6.5114 -5.0857 -6.8162 25 6 7.7479 -5.3604 -7.2693 26 8 8.1647 -6.4869 -7.4549 27 7 8.4678 -4.2549 -7.4927 28 6 7.7661 -3.1361 -7.2069 29 8 8.1410 -1.9875 -7.3072 30 1 -0.3633 -0.0773 1.0248 31 1 -0.3633 0.9261 -0.4453 32 1 -0.3633 -0.8488 -0.5793 33 1 5.0174 2.3222 0.9390 34 1 1.6085 -2.0285 0.5131 35 1 3.1500 -1.1385 0.5134 36 1 4.1837 -0.6804 -1.6546 37 1 4.0525 -3.0489 -0.9066 38 1 2.4437 -3.8088 -0.9586 39 1 1.6654 -3.5749 -4.0754 40 1 2.8035 -4.9283 -4.2780 41 1 1.7428 -4.8635 -2.8501 42 1 4.7136 -4.7331 -4.9125 43 1 4.0121 -3.2072 -5.5024 44 1 6.2096 -2.0912 -5.2266 45 1 6.9104 -3.6174 -4.6368 46 1 5.8215 -5.7284 -6.5886 47 1 9.3805 -4.2560 -7.8210 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486355756.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:09:19 Heat of formation + Delta-G solvation = -96.522708 kcal Electronic energy + Delta-G solvation = -30777.177949 eV Core-core repulsion = 26383.345235 eV Total energy + Delta-G solvation = -4393.832714 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.178 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.72334 -39.98617 -38.99515 -37.41458 -36.77589 -35.45690 -34.93486 -34.38872 -32.59187 -31.56623 -30.11967 -28.30001 -27.17675 -26.26410 -25.42208 -23.73247 -22.99825 -21.86972 -21.49201 -20.74044 -19.16987 -18.77558 -17.45685 -17.32837 -16.97540 -16.89773 -16.27032 -16.14255 -15.99734 -15.79552 -15.52811 -14.98955 -14.69236 -14.52482 -14.39378 -13.96798 -13.72245 -13.66664 -13.31455 -12.99156 -12.81656 -12.69061 -12.60132 -12.30708 -12.18668 -11.95908 -11.51476 -11.47251 -11.34602 -11.24471 -10.83795 -10.78712 -10.66071 -10.51475 -10.44301 -9.98959 -9.97656 -9.77282 -9.55999 -9.45706 -8.50039 -8.38979 -6.73898 -5.91483 -3.31228 1.18120 1.99068 2.58371 2.64717 2.71745 2.98512 3.29848 3.47896 3.51823 3.53970 4.08307 4.34049 4.53704 4.55529 4.70527 4.75933 4.88696 4.92124 4.95060 5.10783 5.16155 5.23973 5.42918 5.45249 5.49103 5.54348 5.62076 5.65770 5.76460 5.81269 5.93913 6.04269 6.23608 6.26976 6.32538 6.46469 6.50309 6.60914 6.68743 6.77702 6.96385 7.38616 7.70212 8.10414 8.24817 8.44896 8.64446 9.02931 9.77002 10.16132 11.24285 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.016836 B = 0.002539 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.733020 B =11025.854582 C =11794.680159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.126 3.874 2 N -0.603 5.603 3 C -0.253 4.253 4 H 0.076 0.924 5 C 0.035 3.965 6 N -0.896 5.896 7 Si 0.871 3.129 8 H -0.287 1.287 9 H -0.301 1.301 10 H -0.272 1.272 11 C 0.108 3.892 12 C 0.080 3.920 13 H 0.083 0.917 14 O -0.533 6.533 15 C 0.077 3.923 16 N -0.610 5.610 17 C 0.079 3.921 18 C 0.516 3.484 19 O -0.526 6.526 20 C -0.135 4.135 21 C -0.106 4.106 22 C 0.092 3.908 23 H 0.133 0.867 24 N -0.722 5.722 25 C 0.706 3.294 26 O -0.547 6.547 27 N -0.682 5.682 28 C 0.529 3.471 29 O -0.455 6.455 30 H 0.006 0.994 31 H 0.045 0.955 32 H 0.024 0.976 33 H 0.262 0.738 34 H 0.043 0.957 35 H 0.058 0.942 36 H 0.375 0.625 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.057 0.943 40 H 0.068 0.932 41 H 0.070 0.930 42 H 0.089 0.911 43 H 0.099 0.901 44 H 0.105 0.895 45 H 0.084 0.916 46 H 0.440 0.560 47 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.485 -18.961 -15.133 24.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.019 4.019 2 N -0.327 5.327 3 C -0.381 4.381 4 H 0.093 0.907 5 C -0.165 4.165 6 N -0.537 5.537 7 Si 0.701 3.299 8 H -0.215 1.215 9 H -0.229 1.229 10 H -0.197 1.197 11 C -0.019 4.019 12 C 0.016 3.984 13 H 0.101 0.899 14 O -0.338 6.338 15 C -0.047 4.047 16 N -0.343 5.343 17 C -0.065 4.065 18 C 0.304 3.696 19 O -0.402 6.402 20 C -0.175 4.175 21 C -0.145 4.145 22 C -0.017 4.017 23 H 0.151 0.849 24 N -0.387 5.387 25 C 0.405 3.595 26 O -0.421 6.421 27 N -0.354 5.354 28 C 0.314 3.686 29 O -0.323 6.323 30 H 0.024 0.976 31 H 0.064 0.936 32 H 0.042 0.958 33 H 0.071 0.929 34 H 0.061 0.939 35 H 0.075 0.925 36 H 0.222 0.778 37 H 0.102 0.898 38 H 0.096 0.904 39 H 0.076 0.924 40 H 0.087 0.913 41 H 0.089 0.911 42 H 0.107 0.893 43 H 0.118 0.882 44 H 0.123 0.877 45 H 0.103 0.897 46 H 0.285 0.715 47 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -0.070 -18.376 -15.283 23.901 hybrid contribution 0.639 -1.070 1.217 1.742 sum 0.568 -19.446 -14.067 24.007 Atomic orbital electron populations 1.21064 0.84591 0.99009 0.97243 1.43879 1.00601 1.01788 1.86397 1.18680 1.06030 0.90355 1.23078 0.90678 1.25415 0.96872 0.96437 0.97765 1.69891 1.08435 1.36085 1.39305 0.87035 0.77665 0.80184 0.84995 1.21543 1.22928 1.19743 1.21834 0.97155 0.88788 0.94117 1.22884 0.93213 0.85891 0.96420 0.89870 1.86492 1.29266 1.62419 1.55573 1.22468 1.02300 0.98079 0.81806 1.47699 1.16271 1.55849 1.14495 1.21791 0.91700 0.95775 0.97216 1.20303 0.81532 0.79520 0.88254 1.90733 1.44476 1.39136 1.65854 1.21625 0.98454 1.02285 0.95162 1.21578 0.97334 1.04482 0.91070 1.22221 0.97397 0.81134 1.00923 0.84918 1.45593 1.14987 1.07756 1.70389 1.15835 0.81729 0.84023 0.77918 1.91067 1.73514 1.20375 1.57169 1.44416 1.18952 1.08062 1.63963 1.20835 0.87263 0.84716 0.75742 1.90903 1.74699 1.17731 1.48919 0.97592 0.93590 0.95768 0.92850 0.93912 0.92457 0.77768 0.89850 0.90396 0.92409 0.91341 0.91115 0.89286 0.88228 0.87697 0.89731 0.71503 0.72494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 2.49 10.70 59.85 0.64 3.13 16 2 N -0.60 -14.27 2.45 -181.12 -0.44 -14.72 16 3 C -0.25 -7.10 9.39 -15.06 -0.14 -7.24 16 4 H 0.08 2.33 8.06 -52.49 -0.42 1.90 16 5 C 0.04 1.02 5.29 -17.43 -0.09 0.92 16 6 N -0.90 -27.52 13.97 55.49 0.78 -26.75 16 7 Si 0.87 22.14 25.10 -169.99 -4.27 17.87 16 8 H -0.29 -7.04 6.68 56.52 0.38 -6.66 16 9 H -0.30 -7.84 7.11 56.52 0.40 -7.44 16 10 H -0.27 -6.81 7.11 56.52 0.40 -6.40 16 11 C 0.11 2.23 4.21 -4.04 -0.02 2.21 16 12 C 0.08 1.43 3.48 -26.73 -0.09 1.34 16 13 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 14 O -0.53 -11.67 11.62 -43.95 -0.51 -12.18 16 15 C 0.08 1.09 5.19 -4.04 -0.02 1.07 16 16 N -0.61 -7.13 2.83 -181.58 -0.51 -7.65 16 17 C 0.08 0.55 10.29 59.84 0.62 1.17 16 18 C 0.52 6.57 7.18 -10.99 -0.08 6.49 16 19 O -0.53 -9.14 14.35 -3.15 -0.05 -9.19 16 20 C -0.14 -0.97 4.17 -27.88 -0.12 -1.09 16 21 C -0.11 -0.85 4.27 -26.73 -0.11 -0.97 16 22 C 0.09 0.52 3.67 -68.21 -0.25 0.27 16 23 H 0.13 0.44 8.14 -51.93 -0.42 0.02 16 24 N -0.72 -3.74 5.98 -59.20 -0.35 -4.10 16 25 C 0.71 5.76 9.00 -88.02 -0.79 4.97 16 26 O -0.55 -6.49 18.04 5.33 0.10 -6.39 16 27 N -0.68 -4.79 5.72 -15.71 -0.09 -4.88 16 28 C 0.53 4.33 8.17 -10.40 -0.08 4.24 16 29 O -0.46 -5.34 18.02 5.59 0.10 -5.24 16 30 H 0.01 0.12 8.14 -51.93 -0.42 -0.31 16 31 H 0.05 0.91 8.00 -51.93 -0.42 0.49 16 32 H 0.02 0.40 8.10 -51.93 -0.42 -0.02 16 33 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 34 H 0.04 0.76 8.07 -51.93 -0.42 0.34 16 35 H 0.06 1.32 3.38 -51.93 -0.18 1.14 16 36 H 0.37 8.72 8.45 45.56 0.39 9.10 16 37 H 0.08 1.35 7.42 -51.93 -0.39 0.97 16 38 H 0.08 0.88 7.89 -51.93 -0.41 0.47 16 39 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.07 0.28 6.44 -51.92 -0.33 -0.05 16 41 H 0.07 0.42 7.89 -51.93 -0.41 0.01 16 42 H 0.09 0.38 6.73 -51.93 -0.35 0.03 16 43 H 0.10 0.55 8.11 -51.93 -0.42 0.13 16 44 H 0.10 1.09 8.10 -51.93 -0.42 0.67 16 45 H 0.08 0.80 8.10 -51.93 -0.42 0.38 16 46 H 0.44 1.33 8.45 -40.82 -0.34 0.98 16 47 H 0.43 2.34 8.96 -40.82 -0.37 1.97 16 LS Contribution 387.01 15.07 5.83 5.83 Total: -1.00 -38.66 387.01 -6.14 -44.80 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -6.18 Total: 6.06 kcal Atomic # 6 Polarization: 17.06 SS G_CDS: -0.54 Total: 16.52 kcal Atomic # 7 Polarization: -57.46 SS G_CDS: -0.63 Total: -58.09 kcal Atomic # 8 Polarization: -32.64 SS G_CDS: -0.36 Total: -33.00 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.27 Total: 17.87 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -38.66 -6.14 -44.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486355756.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.719 kcal (2) G-P(sol) polarization free energy of solvation -38.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds