Wall clock time and date at job start Wed Apr 1 2020 01:31:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21279 * 119.99926 * 2 1 4 4 N 1.34775 * 119.99773 * 179.97438 * 2 1 3 5 5 C 1.47063 * 136.06196 * 359.63468 * 4 2 1 6 6 C 1.53231 * 88.08605 * 207.20272 * 5 4 2 7 7 C 1.50701 * 114.50631 * 220.45718 * 6 5 4 8 8 O 1.21287 * 120.00262 * 93.84056 * 7 6 5 9 9 N 1.34778 * 120.00192 * 273.84104 * 7 6 5 10 10 C 1.46491 * 120.00453 * 179.97438 * 9 7 6 11 11 C 1.53002 * 109.47487 * 179.97438 * 10 9 7 12 12 H 1.08998 * 109.47445 * 305.00626 * 11 10 9 13 13 O 1.42897 * 109.46801 * 65.00433 * 11 10 9 14 14 C 1.52997 * 109.47197 * 185.00214 * 11 10 9 15 15 N 1.46906 * 109.47021 * 180.02562 * 14 11 10 16 16 C 1.46899 * 111.00165 * 179.97438 * 15 14 11 17 17 C 1.50703 * 109.47267 * 179.97438 * 16 15 14 18 18 O 1.21294 * 119.99627 * 0.02562 * 17 16 15 19 19 N 1.34774 * 119.99878 * 180.02562 * 17 16 15 20 20 C 1.37098 * 119.99880 * 180.02562 * 19 17 16 21 21 H 1.08003 * 119.99954 * 359.97438 * 20 19 17 22 22 C 1.38951 * 120.00145 * 179.97438 * 20 19 17 23 23 N 1.31409 * 119.99989 * 359.97438 * 22 20 19 24 24 Si 1.86792 * 119.99968 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47353 * 89.99921 * 24 22 20 26 26 H 1.48503 * 109.47369 * 209.99770 * 24 22 20 27 27 H 1.48503 * 109.47493 * 329.99737 * 24 22 20 28 28 C 1.47066 * 136.05495 * 179.97438 * 4 2 1 29 29 H 1.09002 * 109.47152 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.46980 * 240.00238 * 1 2 3 31 31 H 1.09004 * 109.47113 * 120.00219 * 1 2 3 32 32 H 1.09009 * 113.46583 * 321.93399 * 5 4 2 33 33 H 1.08996 * 113.46984 * 92.36897 * 5 4 2 34 34 H 1.08996 * 114.02615 * 87.71134 * 6 5 4 35 35 H 0.97003 * 119.99569 * 0.02562 * 9 7 6 36 36 H 1.08998 * 109.47796 * 300.00533 * 10 9 7 37 37 H 1.09007 * 109.47130 * 60.00355 * 10 9 7 38 38 H 0.96702 * 114.00722 * 60.00210 * 13 11 10 39 39 H 1.08997 * 109.47547 * 299.99611 * 14 11 10 40 40 H 1.08994 * 109.47274 * 60.00171 * 14 11 10 41 41 H 1.00902 * 111.00266 * 303.95643 * 15 14 11 42 42 H 1.08993 * 109.47071 * 300.00479 * 16 15 14 43 43 H 1.09004 * 109.46746 * 59.99948 * 16 15 14 44 44 H 0.97003 * 119.99956 * 0.02562 * 19 17 16 45 45 H 0.96993 * 120.00327 * 180.02562 * 23 22 20 46 46 H 1.08998 * 113.47403 * 267.62937 * 28 4 2 47 47 H 1.09005 * 113.47118 * 38.01191 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.8266 -2.5945 0.0077 6 6 3.1647 -2.8705 0.7014 7 6 3.8800 -4.1034 0.2121 8 8 4.7140 -4.0132 -0.6639 9 7 3.5928 -5.3063 0.7478 10 6 4.2876 -6.5049 0.2718 11 6 3.7801 -7.7273 1.0392 12 1 3.8920 -7.5565 2.1099 13 8 2.4011 -7.9432 0.7329 14 6 4.5918 -8.9585 0.6317 15 7 4.1040 -10.1324 1.3681 16 6 4.8615 -11.3363 1.0011 17 6 4.3343 -12.5170 1.7752 18 8 3.4175 -12.3700 2.5556 19 7 4.8817 -13.7361 1.6004 20 6 4.4018 -14.8102 2.3043 21 1 3.5854 -14.6794 2.9992 22 6 4.9657 -16.0673 2.1237 23 7 5.9587 -16.2266 1.2779 24 14 4.3123 -17.5306 3.0833 25 1 3.2233 -18.1820 2.3120 26 1 5.4102 -18.5049 3.3088 27 1 3.7841 -17.0686 4.3920 28 6 3.5941 -1.5740 0.0002 29 1 -0.3633 1.0277 -0.0005 30 1 -0.3633 -0.5138 0.8900 31 1 -0.3633 -0.5139 -0.8900 32 1 0.9614 -2.8239 0.6298 33 1 1.7566 -3.0294 -0.9893 34 1 3.1242 -2.7988 1.7882 35 1 2.9255 -5.3785 1.4481 36 1 4.0950 -6.6380 -0.7927 37 1 5.3595 -6.3928 0.4358 38 1 2.2266 -8.1024 -0.2048 39 1 4.4798 -9.1296 -0.4390 40 1 5.6436 -8.7940 0.8653 41 1 4.1368 -9.9738 2.3640 42 1 4.7514 -11.5232 -0.0671 43 1 5.9153 -11.1886 1.2373 44 1 5.6152 -13.8535 0.9766 45 1 6.3522 -17.1041 1.1515 46 1 3.9996 -1.7345 -0.9987 47 1 4.2295 -0.9366 0.6153 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568558317.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:31:20 Heat of formation + Delta-G solvation = -116.690401 kcal Electronic energy + Delta-G solvation = -28266.598339 eV Core-core repulsion = 23871.891088 eV Total energy + Delta-G solvation = -4394.707251 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.178 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.43697 -39.74720 -38.63640 -38.12520 -37.64128 -35.06489 -34.59302 -33.81689 -31.80801 -31.27057 -30.55660 -29.23613 -27.30166 -26.59246 -25.23257 -23.97037 -22.88556 -22.06657 -20.61488 -19.56290 -19.29013 -18.22991 -17.92721 -17.47418 -17.19780 -16.73546 -16.27531 -16.06991 -15.85847 -15.52544 -15.39318 -14.99915 -14.86710 -14.46949 -14.35295 -13.85055 -13.77766 -13.58227 -13.45825 -13.33564 -13.17071 -13.05136 -12.90703 -12.61242 -12.54080 -12.47112 -11.92560 -11.59780 -11.53127 -11.44671 -11.22605 -11.05881 -10.63328 -10.41401 -10.37810 -10.24539 -10.11518 -9.57279 -9.53341 -9.32456 -8.50022 -8.11766 -7.98714 -6.44232 -3.85154 2.02681 2.08613 2.15850 2.70197 3.16187 3.25042 3.30708 3.55471 3.86230 3.87931 3.90461 4.14121 4.18507 4.24606 4.37486 4.45748 4.60497 4.65900 4.69473 4.74713 4.84158 4.85823 4.86387 5.05382 5.07807 5.09375 5.20026 5.25941 5.30462 5.34637 5.45123 5.45776 5.71965 5.76483 5.90760 5.92016 6.21669 6.97783 7.08293 7.11762 7.43522 7.52898 7.59378 7.60224 7.70466 8.03585 8.58472 9.15400 9.51421 10.02807 10.73497 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.041085 B = 0.001314 C = 0.001286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.349697 B =21295.795308 C =21773.148915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.542 3.458 3 O -0.543 6.543 4 N -0.652 5.652 5 C 0.120 3.880 6 C -0.155 4.155 7 C 0.527 3.473 8 O -0.535 6.535 9 N -0.717 5.717 10 C 0.086 3.914 11 C 0.101 3.899 12 H 0.104 0.896 13 O -0.542 6.542 14 C 0.029 3.971 15 N -0.658 5.658 16 C 0.050 3.950 17 C 0.440 3.560 18 O -0.582 6.582 19 N -0.563 5.563 20 C -0.300 4.300 21 H 0.103 0.897 22 C 0.023 3.977 23 N -0.902 5.902 24 Si 0.930 3.070 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.270 1.270 28 C 0.125 3.875 29 H 0.094 0.906 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.129 0.871 35 H 0.408 0.592 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.376 0.624 39 H 0.077 0.923 40 H 0.038 0.962 41 H 0.350 0.650 42 H 0.086 0.914 43 H 0.043 0.957 44 H 0.392 0.608 45 H 0.272 0.728 46 H 0.101 0.899 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.132 26.708 -4.040 27.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.333 3.667 3 O -0.419 6.419 4 N -0.389 5.389 5 C -0.003 4.003 6 C -0.177 4.177 7 C 0.312 3.688 8 O -0.411 6.411 9 N -0.369 5.369 10 C -0.038 4.038 11 C 0.041 3.959 12 H 0.122 0.878 13 O -0.347 6.347 14 C -0.102 4.102 15 N -0.290 5.290 16 C -0.082 4.082 17 C 0.225 3.775 18 O -0.466 6.466 19 N -0.200 5.200 20 C -0.430 4.430 21 H 0.121 0.879 22 C -0.179 4.179 23 N -0.543 5.543 24 Si 0.757 3.243 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.194 1.194 28 C 0.002 3.998 29 H 0.113 0.887 30 H 0.108 0.892 31 H 0.107 0.893 32 H 0.110 0.890 33 H 0.111 0.889 34 H 0.147 0.853 35 H 0.243 0.757 36 H 0.093 0.907 37 H 0.097 0.903 38 H 0.223 0.777 39 H 0.096 0.904 40 H 0.056 0.944 41 H 0.170 0.830 42 H 0.104 0.896 43 H 0.061 0.939 44 H 0.225 0.775 45 H 0.081 0.919 46 H 0.119 0.881 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -6.422 27.433 -3.993 28.457 hybrid contribution 0.948 -1.037 0.156 1.413 sum -5.474 26.397 -3.837 27.230 Atomic orbital electron populations 1.21876 0.90721 1.05657 1.04442 1.20444 0.90210 0.81082 0.74990 1.90754 1.70887 1.30208 1.50099 1.49609 1.09595 1.05460 1.74197 1.22824 0.96543 0.79758 1.01220 1.23104 0.97927 0.93880 1.02801 1.20052 0.82686 0.84070 0.82040 1.90753 1.33420 1.86196 1.30740 1.45876 1.43086 1.06469 1.41472 1.22129 0.97725 0.84476 0.99492 1.22092 0.82733 0.91109 0.99999 0.87812 1.86626 1.23122 1.93776 1.31171 1.22569 0.96574 0.90986 1.00061 1.59950 1.56301 1.00713 1.12084 1.21690 0.95081 0.90691 1.00762 1.19781 0.86560 0.84149 0.86986 1.90534 1.31363 1.84665 1.40019 1.41861 1.32630 1.06415 1.39101 1.19712 1.16771 0.85778 1.20719 0.87899 1.25259 0.96209 0.99031 0.97387 1.69607 1.24273 1.24824 1.35613 0.85854 0.78192 0.80363 0.79857 1.20370 1.20937 1.19414 1.22825 0.84172 0.90940 1.01842 0.88681 0.89233 0.89292 0.89019 0.88863 0.85263 0.75716 0.90704 0.90338 0.77676 0.90430 0.94395 0.83012 0.89613 0.93917 0.77475 0.91857 0.88097 0.89633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.68 10.15 36.01 0.37 -0.31 16 2 C 0.54 4.54 8.19 -10.98 -0.09 4.45 16 3 O -0.54 -7.13 17.86 5.56 0.10 -7.03 16 4 N -0.65 -4.33 3.69 -185.41 -0.68 -5.01 16 5 C 0.12 0.43 7.98 -8.66 -0.07 0.36 16 6 C -0.16 -0.70 4.47 -91.38 -0.41 -1.10 16 7 C 0.53 3.66 7.41 -10.98 -0.08 3.58 16 8 O -0.53 -5.91 15.95 5.55 0.09 -5.82 16 9 N -0.72 -4.00 5.50 -60.29 -0.33 -4.33 16 10 C 0.09 0.57 5.31 -4.05 -0.02 0.55 16 11 C 0.10 0.78 3.21 -26.73 -0.09 0.69 16 12 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 13 O -0.54 -4.93 13.15 -35.23 -0.46 -5.39 16 14 C 0.03 0.28 5.35 -3.82 -0.02 0.26 16 15 N -0.66 -9.62 5.99 -115.06 -0.69 -10.31 16 16 C 0.05 0.84 6.17 -4.98 -0.03 0.80 16 17 C 0.44 10.13 7.82 -10.99 -0.09 10.04 16 18 O -0.58 -15.55 15.78 5.55 0.09 -15.46 16 19 N -0.56 -14.02 5.29 -10.96 -0.06 -14.07 16 20 C -0.30 -8.28 9.68 -14.93 -0.14 -8.42 16 21 H 0.10 2.98 7.16 -52.48 -0.38 2.60 16 22 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 23 N -0.90 -24.22 13.05 55.50 0.72 -23.50 16 24 Si 0.93 20.78 29.55 -169.99 -5.02 15.76 16 25 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 26 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 27 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 28 C 0.13 0.85 7.97 -8.51 -0.07 0.78 16 29 H 0.09 0.40 8.12 -51.93 -0.42 -0.02 16 30 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.09 0.23 8.14 -51.93 -0.42 -0.20 16 32 H 0.09 0.12 8.14 -51.92 -0.42 -0.30 16 33 H 0.09 0.33 8.10 -51.93 -0.42 -0.09 16 34 H 0.13 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.41 1.59 8.47 -40.82 -0.35 1.24 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.08 0.56 8.14 -51.92 -0.42 0.14 16 38 H 0.38 2.51 9.05 45.56 0.41 2.92 16 39 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.35 5.40 8.43 -39.29 -0.33 5.07 16 42 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 43 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 44 H 0.39 9.30 7.90 -40.82 -0.32 8.98 16 45 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 46 H 0.10 0.79 7.46 -51.93 -0.39 0.40 16 47 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 407.03 15.07 6.13 6.13 Total: -1.00 -37.69 407.03 -7.35 -45.04 By element: Atomic # 1 Polarization: 18.20 SS G_CDS: -6.40 Total: 11.80 kcal Atomic # 6 Polarization: 13.02 SS G_CDS: -0.84 Total: 12.18 kcal Atomic # 7 Polarization: -56.18 SS G_CDS: -1.04 Total: -57.22 kcal Atomic # 8 Polarization: -33.52 SS G_CDS: -0.19 Total: -33.70 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -37.69 -7.35 -45.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568558317.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.647 kcal (2) G-P(sol) polarization free energy of solvation -37.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds