Wall clock time and date at job start Wed Apr 1 2020 02:10:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46903 * 110.99774 * 2 1 4 4 C 1.53000 * 109.47237 * 66.04357 * 3 2 1 5 5 N 1.46500 * 109.47129 * 179.97438 * 4 3 2 6 6 C 1.34769 * 120.00122 * 180.02562 * 5 4 3 7 7 O 1.21621 * 120.00052 * 359.72952 * 6 5 4 8 8 C 1.43206 * 120.00280 * 179.72235 * 6 5 4 9 9 C 7.21256 * 101.43184 * 19.75234 * 2 1 3 10 10 C 8.60128 * 103.18745 * 16.59393 * 2 1 3 11 11 C 1.52998 * 117.49931 * 156.31539 * 10 9 8 12 12 C 1.52997 * 117.50382 * 87.65248 * 10 9 8 13 13 C 1.46898 * 110.99775 * 236.04834 * 2 1 3 14 14 C 1.50703 * 109.47074 * 293.94813 * 13 2 1 15 15 C 1.38305 * 119.93218 * 269.73326 * 14 13 2 16 16 C 1.38101 * 120.06747 * 179.72249 * 15 14 13 17 17 C 1.38883 * 119.92725 * 0.56908 * 16 15 14 18 18 O 1.35757 * 120.06598 * 179.68332 * 17 16 15 19 19 C 1.34832 * 117.00002 * 174.48792 * 18 17 16 20 20 H 1.07993 * 119.99740 * 5.05503 * 19 18 17 21 21 C 1.38650 * 119.99851 * 185.05244 * 19 18 17 22 22 N 1.31556 * 120.00371 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99875 * 179.97438 * 21 19 18 24 24 H 1.48508 * 109.46753 * 90.00356 * 23 21 19 25 25 H 1.48498 * 109.47225 * 210.00114 * 23 21 19 26 26 H 1.48502 * 109.47452 * 330.00757 * 23 21 19 27 27 C 1.38874 * 119.86728 * 359.70422 * 17 16 15 28 28 C 1.38103 * 119.92728 * 359.97438 * 27 17 16 29 29 H 1.08996 * 109.47286 * 59.99940 * 1 2 3 30 30 H 1.09003 * 109.47279 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47271 * 299.99893 * 1 2 3 32 32 H 1.09003 * 109.46573 * 306.04545 * 3 2 1 33 33 H 1.08998 * 109.46818 * 186.05104 * 3 2 1 34 34 H 1.09000 * 109.46683 * 60.00479 * 4 3 2 35 35 H 1.08996 * 109.47322 * 300.00212 * 4 3 2 36 36 H 0.97000 * 119.99683 * 359.73002 * 5 4 3 37 37 H 1.09000 * 115.55143 * 301.97546 * 10 9 8 38 38 H 1.09006 * 117.49955 * 359.97438 * 11 10 9 39 39 H 1.08996 * 117.50566 * 145.02251 * 11 10 9 40 40 H 1.09000 * 117.50426 * 214.98071 * 12 10 9 41 41 H 1.09004 * 117.49613 * 359.97438 * 12 10 9 42 42 H 1.08989 * 109.47448 * 53.94906 * 13 2 1 43 43 H 1.08998 * 109.46722 * 173.95280 * 13 2 1 44 44 H 1.07995 * 119.96426 * 359.97438 * 15 14 13 45 45 H 1.08000 * 120.03515 * 180.27097 * 16 15 14 46 46 H 0.96989 * 120.00417 * 179.97438 * 22 21 19 47 47 H 1.07995 * 120.03802 * 179.97438 * 27 17 16 48 48 H 1.08002 * 119.96608 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0575 1.3182 5 7 2.1569 3.4250 1.3184 6 6 1.9565 4.2238 2.3853 7 8 1.3351 3.8110 3.3458 8 6 2.4752 5.5586 2.3880 9 6 2.8986 6.6535 2.3892 10 6 3.4313 8.0257 2.3916 11 6 2.5288 9.1349 1.8477 12 6 3.7397 8.6663 1.0369 13 6 1.9954 -0.7659 -1.1376 14 6 1.6370 -2.2204 -0.9728 15 6 2.4981 -3.0720 -0.3049 16 6 2.1697 -4.4041 -0.1473 17 6 0.9790 -4.8909 -0.6707 18 8 0.6564 -6.2013 -0.5230 19 6 -0.5628 -6.5838 -0.9532 20 1 -1.2006 -5.8785 -1.4651 21 6 -0.9977 -7.8827 -0.7382 22 7 -0.2210 -8.7417 -0.1142 23 14 -2.6872 -8.4125 -1.3336 24 1 -2.5810 -8.9412 -2.7173 25 1 -3.2178 -9.4717 -0.4383 26 1 -3.6057 -7.2457 -1.3187 27 6 0.1190 -4.0345 -1.3458 28 6 0.4500 -2.7019 -1.4943 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.5610 1.9273 -0.8310 33 1 3.0797 1.3444 -0.1083 34 1 2.0658 1.5016 2.1491 35 1 0.5471 2.0845 1.4265 36 1 2.6527 3.7541 0.5525 37 1 4.0864 8.2742 3.2266 38 1 1.5406 8.8485 1.4875 39 1 2.5904 10.1132 2.3243 40 1 4.5975 9.3365 0.9806 41 1 3.5484 8.0715 0.1437 42 1 1.5611 -0.3873 -2.0627 43 1 3.0797 -0.6610 -1.1756 44 1 3.4263 -2.6939 0.0974 45 1 2.8405 -5.0677 0.3782 46 1 -0.5254 -9.6502 0.0365 47 1 -0.8074 -4.4101 -1.7543 48 1 -0.2181 -2.0355 -2.0196 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663181201.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:10:58 Heat of formation + Delta-G solvation = 49.375528 kcal Electronic energy + Delta-G solvation = -26934.462493 eV Core-core repulsion = 22957.805664 eV Total energy + Delta-G solvation = -3976.656828 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.173 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.02806 -39.20866 -38.18805 -37.92552 -36.29848 -34.84306 -33.20718 -32.32650 -30.66006 -30.18235 -28.79665 -26.91209 -25.69209 -25.10393 -23.66234 -23.07968 -22.09421 -21.95419 -21.45984 -20.27532 -19.09701 -17.97549 -17.15949 -16.93860 -16.74855 -16.16443 -15.70482 -15.24888 -15.17659 -15.08878 -14.58301 -14.50126 -14.05255 -13.75542 -13.69854 -13.50727 -13.23491 -13.16766 -12.69470 -12.64219 -12.41195 -12.21836 -12.14326 -11.89418 -11.80710 -11.65071 -11.52283 -11.40560 -11.19336 -10.84762 -10.74276 -10.63862 -10.62472 -10.54641 -10.42409 -10.24810 -9.46328 -9.33042 -8.83727 -8.38725 -8.15063 -7.17759 -6.44886 -4.03816 1.12327 1.70960 2.22172 2.25548 2.61043 3.02688 3.12348 3.13749 3.18479 3.37757 3.60217 3.96588 4.05269 4.12551 4.28580 4.40100 4.58483 4.64396 4.80793 4.93328 4.96301 5.09546 5.15107 5.16413 5.19079 5.28540 5.34579 5.36234 5.41035 5.50160 5.55174 5.61802 5.69052 5.77094 5.78524 5.88710 5.95846 6.11606 6.21981 6.42520 6.70794 6.75025 6.88921 6.93923 6.97185 7.04565 7.10712 7.26993 7.39248 7.44897 7.73598 7.83324 8.00066 9.00746 9.71009 10.73143 Molecular weight = 342.17amu Principal moments of inertia in cm(-1) A = 0.028423 B = 0.001379 C = 0.001366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.893847 B =20299.792385 C =20489.506170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.532 5.532 3 C 0.044 3.956 4 C 0.120 3.880 5 N -0.716 5.716 6 C 0.634 3.366 7 O -0.518 6.518 8 C -0.217 4.217 9 C -0.052 4.052 10 C -0.067 4.067 11 C -0.159 4.159 12 C -0.159 4.159 13 C 0.116 3.884 14 C -0.182 4.182 15 C -0.052 4.052 16 C -0.194 4.194 17 C 0.156 3.844 18 O -0.178 6.178 19 C -0.392 4.392 20 H 0.092 0.908 21 C 0.040 3.960 22 N -0.862 5.862 23 Si 0.940 3.060 24 H -0.273 1.273 25 H -0.277 1.277 26 H -0.268 1.268 27 C -0.235 4.235 28 C -0.064 4.064 29 H 0.022 0.978 30 H 0.083 0.917 31 H 0.066 0.934 32 H 0.038 0.962 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.403 0.597 37 H 0.137 0.863 38 H 0.101 0.899 39 H 0.109 0.891 40 H 0.109 0.891 41 H 0.101 0.899 42 H 0.033 0.967 43 H 0.074 0.926 44 H 0.111 0.889 45 H 0.116 0.884 46 H 0.270 0.730 47 H 0.126 0.874 48 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.989 31.970 -1.317 32.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.256 5.256 3 C -0.084 4.084 4 C -0.003 4.003 5 N -0.368 5.368 6 C 0.420 3.580 7 O -0.395 6.395 8 C -0.220 4.220 9 C -0.054 4.054 10 C -0.085 4.085 11 C -0.196 4.196 12 C -0.196 4.196 13 C -0.011 4.011 14 C -0.183 4.183 15 C -0.070 4.070 16 C -0.213 4.213 17 C 0.102 3.898 18 O -0.081 6.081 19 C -0.468 4.468 20 H 0.109 0.891 21 C -0.165 4.165 22 N -0.497 5.497 23 Si 0.765 3.235 24 H -0.199 1.199 25 H -0.202 1.202 26 H -0.192 1.192 27 C -0.254 4.254 28 C -0.083 4.083 29 H 0.041 0.959 30 H 0.102 0.898 31 H 0.085 0.915 32 H 0.056 0.944 33 H 0.099 0.901 34 H 0.102 0.898 35 H 0.092 0.908 36 H 0.237 0.763 37 H 0.154 0.846 38 H 0.119 0.881 39 H 0.128 0.872 40 H 0.127 0.873 41 H 0.120 0.880 42 H 0.052 0.948 43 H 0.092 0.908 44 H 0.129 0.871 45 H 0.134 0.866 46 H 0.080 0.920 47 H 0.143 0.857 48 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 6.784 30.938 -0.037 31.673 hybrid contribution -0.947 0.234 -1.362 1.675 sum 5.837 31.173 -1.399 31.745 Atomic orbital electron populations 1.22554 0.87076 1.03559 0.99965 1.61935 1.08423 1.10857 1.44375 1.22225 1.00873 0.89895 0.95458 1.21453 0.99851 0.79942 0.99051 1.45749 1.57433 1.14415 1.19192 1.14588 0.79394 0.81137 0.82901 1.90900 1.40013 1.74426 1.34146 1.20604 1.03563 0.94169 1.03686 1.21348 0.94257 0.92433 0.97384 1.18935 1.04339 0.84884 1.00333 1.23131 0.96060 0.97689 1.02743 1.23134 1.00244 1.02648 0.93607 1.20805 0.99232 0.90956 0.90091 1.19019 0.97595 0.93772 1.07921 1.20449 0.98046 0.92173 0.96379 1.20221 0.97839 0.95700 1.07577 1.19406 0.93107 0.85018 0.92228 1.83982 1.34219 1.18428 1.71484 1.21319 0.91044 0.96920 1.37559 0.89096 1.25279 0.99667 0.94923 0.96586 1.70033 1.36404 1.04980 1.38284 0.85725 0.80318 0.78854 0.78610 1.19898 1.20227 1.19206 1.21115 1.02635 0.93971 1.07698 1.20582 0.95219 0.94628 0.97877 0.95925 0.89834 0.91519 0.94424 0.90131 0.89799 0.90758 0.76277 0.84552 0.88054 0.87250 0.87269 0.88049 0.94849 0.90764 0.87072 0.86563 0.92010 0.85665 0.87958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 8.97 60.07 0.54 0.73 16 2 N -0.53 -6.34 4.75 -244.37 -1.16 -7.50 16 3 C 0.04 0.39 5.07 -3.82 -0.02 0.37 16 4 C 0.12 1.16 5.60 -4.04 -0.02 1.14 16 5 N -0.72 -6.11 5.55 -62.77 -0.35 -6.46 16 6 C 0.63 7.29 7.65 -14.34 -0.11 7.18 16 7 O -0.52 -8.09 17.09 5.26 0.09 -8.00 16 8 C -0.22 -2.17 13.61 -38.83 -0.53 -2.70 16 9 C -0.05 -0.42 13.47 -37.13 -0.50 -0.92 16 10 C -0.07 -0.32 6.21 -93.41 -0.58 -0.90 16 11 C -0.16 -0.55 10.21 -26.69 -0.27 -0.82 16 12 C -0.16 -0.49 10.21 -26.69 -0.27 -0.76 16 13 C 0.12 1.46 5.12 -4.98 -0.03 1.43 16 14 C -0.18 -2.98 4.89 -104.57 -0.51 -3.49 16 15 C -0.05 -0.91 9.69 -39.61 -0.38 -1.30 16 16 C -0.19 -4.09 9.99 -39.39 -0.39 -4.48 16 17 C 0.16 3.76 6.65 -39.11 -0.26 3.50 16 18 O -0.18 -5.09 9.76 0.02 0.00 -5.09 16 19 C -0.39 -10.96 9.49 30.88 0.29 -10.66 16 20 H 0.09 2.35 5.20 -52.49 -0.27 2.07 16 21 C 0.04 1.09 5.49 -17.52 -0.10 1.00 16 22 N -0.86 -25.32 13.67 55.48 0.76 -24.56 16 23 Si 0.94 20.51 29.55 -169.99 -5.02 15.49 16 24 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 25 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 26 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 27 C -0.23 -5.02 9.17 -39.40 -0.36 -5.38 16 28 C -0.06 -1.14 7.89 -39.61 -0.31 -1.45 16 29 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.08 1.18 5.89 -51.93 -0.31 0.87 16 31 H 0.07 0.75 6.47 -51.93 -0.34 0.41 16 32 H 0.04 0.30 8.12 -51.93 -0.42 -0.13 16 33 H 0.08 0.62 7.93 -51.93 -0.41 0.21 16 34 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.07 0.79 6.55 -51.93 -0.34 0.45 16 36 H 0.40 2.26 8.44 -40.82 -0.34 1.91 16 37 H 0.14 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.11 0.20 8.14 -51.93 -0.42 -0.22 16 40 H 0.11 0.16 8.14 -51.93 -0.42 -0.26 16 41 H 0.10 0.33 8.14 -51.93 -0.42 -0.10 16 42 H 0.03 0.40 8.06 -51.94 -0.42 -0.02 16 43 H 0.07 0.84 7.87 -51.93 -0.41 0.43 16 44 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 45 H 0.12 2.38 8.06 -52.49 -0.42 1.96 16 46 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 47 H 0.13 2.70 5.64 -52.49 -0.30 2.40 16 48 H 0.10 1.55 7.98 -52.49 -0.42 1.13 16 LS Contribution 410.66 15.07 6.19 6.19 Total: -1.00 -33.72 410.66 -10.23 -43.95 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -6.92 Total: 3.51 kcal Atomic # 6 Polarization: -13.70 SS G_CDS: -3.82 Total: -17.52 kcal Atomic # 7 Polarization: -37.78 SS G_CDS: -0.75 Total: -38.53 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: 0.09 Total: -13.09 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -33.72 -10.23 -43.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663181201.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.325 kcal (2) G-P(sol) polarization free energy of solvation -33.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.950 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds