Wall clock time and date at job start Wed Apr 1 2020 02:10:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46903 * 110.99774 * 2 1 4 4 C 1.53000 * 109.47237 * 66.04357 * 3 2 1 5 5 N 1.46500 * 109.47129 * 179.97438 * 4 3 2 6 6 C 1.34769 * 120.00122 * 180.02562 * 5 4 3 7 7 O 1.21621 * 120.00052 * 359.72952 * 6 5 4 8 8 C 1.43206 * 120.00280 * 179.72235 * 6 5 4 9 9 C 7.21256 * 101.43184 * 19.75234 * 2 1 3 10 10 C 8.60128 * 103.18745 * 16.59393 * 2 1 3 11 11 C 1.52998 * 117.49931 * 156.31539 * 10 9 8 12 12 C 1.52997 * 117.50382 * 87.65248 * 10 9 8 13 13 C 1.46898 * 110.99775 * 236.04834 * 2 1 3 14 14 C 1.50703 * 109.47074 * 293.94813 * 13 2 1 15 15 C 1.38305 * 119.93218 * 269.73326 * 14 13 2 16 16 C 1.38101 * 120.06747 * 179.72249 * 15 14 13 17 17 C 1.38883 * 119.92725 * 0.56908 * 16 15 14 18 18 O 1.35757 * 120.06598 * 179.68332 * 17 16 15 19 19 C 1.34832 * 117.00002 * 174.48792 * 18 17 16 20 20 H 1.07993 * 119.99740 * 5.05503 * 19 18 17 21 21 C 1.38650 * 119.99851 * 185.05244 * 19 18 17 22 22 N 1.31556 * 120.00371 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99875 * 179.97438 * 21 19 18 24 24 H 1.48508 * 109.46753 * 90.00356 * 23 21 19 25 25 H 1.48498 * 109.47225 * 210.00114 * 23 21 19 26 26 H 1.48502 * 109.47452 * 330.00757 * 23 21 19 27 27 C 1.38874 * 119.86728 * 359.70422 * 17 16 15 28 28 C 1.38103 * 119.92728 * 359.97438 * 27 17 16 29 29 H 1.08996 * 109.47286 * 59.99940 * 1 2 3 30 30 H 1.09003 * 109.47279 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47271 * 299.99893 * 1 2 3 32 32 H 1.09003 * 109.46573 * 306.04545 * 3 2 1 33 33 H 1.08998 * 109.46818 * 186.05104 * 3 2 1 34 34 H 1.09000 * 109.46683 * 60.00479 * 4 3 2 35 35 H 1.08996 * 109.47322 * 300.00212 * 4 3 2 36 36 H 0.97000 * 119.99683 * 359.73002 * 5 4 3 37 37 H 1.09000 * 115.55143 * 301.97546 * 10 9 8 38 38 H 1.09006 * 117.49955 * 359.97438 * 11 10 9 39 39 H 1.08996 * 117.50566 * 145.02251 * 11 10 9 40 40 H 1.09000 * 117.50426 * 214.98071 * 12 10 9 41 41 H 1.09004 * 117.49613 * 359.97438 * 12 10 9 42 42 H 1.08989 * 109.47448 * 53.94906 * 13 2 1 43 43 H 1.08998 * 109.46722 * 173.95280 * 13 2 1 44 44 H 1.07995 * 119.96426 * 359.97438 * 15 14 13 45 45 H 1.08000 * 120.03515 * 180.27097 * 16 15 14 46 46 H 0.96989 * 120.00417 * 179.97438 * 22 21 19 47 47 H 1.07995 * 120.03802 * 179.97438 * 27 17 16 48 48 H 1.08002 * 119.96608 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0575 1.3182 5 7 2.1569 3.4250 1.3184 6 6 1.9565 4.2238 2.3853 7 8 1.3351 3.8110 3.3458 8 6 2.4752 5.5586 2.3880 9 6 2.8986 6.6535 2.3892 10 6 3.4313 8.0257 2.3916 11 6 2.5288 9.1349 1.8477 12 6 3.7397 8.6663 1.0369 13 6 1.9954 -0.7659 -1.1376 14 6 1.6370 -2.2204 -0.9728 15 6 2.4981 -3.0720 -0.3049 16 6 2.1697 -4.4041 -0.1473 17 6 0.9790 -4.8909 -0.6707 18 8 0.6564 -6.2013 -0.5230 19 6 -0.5628 -6.5838 -0.9532 20 1 -1.2006 -5.8785 -1.4651 21 6 -0.9977 -7.8827 -0.7382 22 7 -0.2210 -8.7417 -0.1142 23 14 -2.6872 -8.4125 -1.3336 24 1 -2.5810 -8.9412 -2.7173 25 1 -3.2178 -9.4717 -0.4383 26 1 -3.6057 -7.2457 -1.3187 27 6 0.1190 -4.0345 -1.3458 28 6 0.4500 -2.7019 -1.4943 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.5610 1.9273 -0.8310 33 1 3.0797 1.3444 -0.1083 34 1 2.0658 1.5016 2.1491 35 1 0.5471 2.0845 1.4265 36 1 2.6527 3.7541 0.5525 37 1 4.0864 8.2742 3.2266 38 1 1.5406 8.8485 1.4875 39 1 2.5904 10.1132 2.3243 40 1 4.5975 9.3365 0.9806 41 1 3.5484 8.0715 0.1437 42 1 1.5611 -0.3873 -2.0627 43 1 3.0797 -0.6610 -1.1756 44 1 3.4263 -2.6939 0.0974 45 1 2.8405 -5.0677 0.3782 46 1 -0.5254 -9.6502 0.0365 47 1 -0.8074 -4.4101 -1.7543 48 1 -0.2181 -2.0355 -2.0196 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663181201.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:10:57 Heat of formation + Delta-G solvation = 26.910347 kcal Electronic energy + Delta-G solvation = -26935.436656 eV Core-core repulsion = 22957.805664 eV Total energy + Delta-G solvation = -3977.630992 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.173 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.95146 -40.77711 -39.21498 -38.50352 -37.72191 -35.81471 -34.30604 -33.85395 -31.94716 -31.74301 -29.81228 -28.06506 -27.36060 -26.07781 -24.58593 -23.56819 -23.29252 -22.85777 -22.39368 -21.67723 -19.85546 -19.79859 -18.79990 -17.66345 -17.53811 -16.99592 -16.51397 -16.47964 -16.31112 -16.16929 -15.87018 -15.77192 -15.46263 -15.19880 -15.01773 -14.71065 -14.44300 -14.24717 -13.96606 -13.57735 -13.52715 -13.17655 -12.98923 -12.93499 -12.76206 -12.56912 -12.48479 -12.42009 -12.36210 -12.21455 -12.13720 -12.07730 -11.94545 -11.63780 -11.15123 -11.12771 -10.78736 -10.74393 -10.27456 -9.73376 -9.29237 -8.86896 -8.46569 -6.14773 0.37651 0.63230 0.69231 1.08049 1.34537 1.43791 1.52127 1.85977 2.17868 2.31832 2.75307 2.95059 3.04361 3.16975 3.41563 3.55223 3.80073 3.83126 3.98059 4.02205 4.05361 4.07354 4.10031 4.23676 4.42227 4.43485 4.46973 4.54535 4.62048 4.64673 4.77604 4.80683 4.83174 4.86912 4.94706 4.98019 5.08691 5.11674 5.14820 5.17006 5.18405 5.21836 5.33515 5.60150 5.73742 5.81555 6.03944 6.07160 6.09645 6.13731 6.27280 6.30640 6.95755 6.98272 7.80095 8.76871 Molecular weight = 342.17amu Principal moments of inertia in cm(-1) A = 0.028423 B = 0.001379 C = 0.001366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.893847 B =20299.792385 C =20489.506170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.548 5.548 3 C 0.054 3.946 4 C 0.125 3.875 5 N -0.696 5.696 6 C 0.634 3.366 7 O -0.572 6.572 8 C -0.266 4.266 9 C -0.022 4.022 10 C -0.091 4.091 11 C -0.156 4.156 12 C -0.146 4.146 13 C 0.118 3.882 14 C -0.154 4.154 15 C -0.047 4.047 16 C -0.208 4.208 17 C 0.113 3.887 18 O -0.235 6.235 19 C -0.413 4.413 20 H 0.101 0.899 21 C -0.023 4.023 22 N -0.922 5.922 23 Si 1.018 2.982 24 H -0.262 1.262 25 H -0.272 1.272 26 H -0.254 1.254 27 C -0.244 4.244 28 C -0.059 4.059 29 H 0.040 0.960 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.059 0.941 33 H 0.100 0.900 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.420 0.580 37 H 0.155 0.845 38 H 0.093 0.907 39 H 0.129 0.871 40 H 0.130 0.870 41 H 0.099 0.901 42 H 0.054 0.946 43 H 0.098 0.902 44 H 0.146 0.854 45 H 0.110 0.890 46 H 0.272 0.728 47 H 0.116 0.884 48 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.699 36.664 -3.145 37.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.273 5.273 3 C -0.074 4.074 4 C 0.001 3.999 5 N -0.348 5.348 6 C 0.421 3.579 7 O -0.453 6.453 8 C -0.269 4.269 9 C -0.025 4.025 10 C -0.108 4.108 11 C -0.193 4.193 12 C -0.183 4.183 13 C -0.008 4.008 14 C -0.155 4.155 15 C -0.066 4.066 16 C -0.227 4.227 17 C 0.063 3.937 18 O -0.142 6.142 19 C -0.490 4.490 20 H 0.118 0.882 21 C -0.220 4.220 22 N -0.560 5.560 23 Si 0.837 3.163 24 H -0.187 1.187 25 H -0.196 1.196 26 H -0.177 1.177 27 C -0.263 4.263 28 C -0.078 4.078 29 H 0.059 0.941 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.119 0.881 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.257 0.743 37 H 0.172 0.828 38 H 0.111 0.889 39 H 0.147 0.853 40 H 0.149 0.851 41 H 0.118 0.882 42 H 0.072 0.928 43 H 0.117 0.883 44 H 0.164 0.836 45 H 0.128 0.872 46 H 0.081 0.919 47 H 0.134 0.866 48 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 7.536 35.708 -1.919 36.545 hybrid contribution -0.962 -0.767 -0.799 1.467 sum 6.574 34.940 -2.718 35.657 Atomic orbital electron populations 1.22508 0.87364 1.02194 1.01043 1.61786 1.08360 1.12902 1.44225 1.22190 1.02028 0.88084 0.95118 1.21325 0.99088 0.80229 0.99252 1.45557 1.56557 1.13678 1.18994 1.14806 0.78615 0.81821 0.82635 1.90863 1.42645 1.75632 1.36151 1.20461 1.05767 0.94541 1.06095 1.22104 0.92336 0.92788 0.95224 1.19304 1.05783 0.83375 1.02374 1.23248 0.95774 0.97785 1.02464 1.23264 1.00707 1.01999 0.92302 1.20834 1.00978 0.87852 0.91160 1.19595 0.95803 0.96146 1.03992 1.20861 0.99500 0.90573 0.95623 1.20473 0.97036 0.97438 1.07744 1.19961 0.94990 0.84486 0.94307 1.83943 1.35019 1.20969 1.74251 1.21813 0.91521 0.97708 1.37918 0.88162 1.26573 1.04198 0.94595 0.96630 1.70183 1.39063 1.05561 1.41181 0.84604 0.74671 0.78697 0.78343 1.18684 1.19632 1.17718 1.21216 1.02039 0.95439 1.07654 1.20927 0.96187 0.93255 0.97389 0.94132 0.92299 0.91333 0.92298 0.88129 0.91723 0.91881 0.74262 0.82790 0.88893 0.85315 0.85141 0.88209 0.92836 0.88327 0.83603 0.87228 0.91880 0.86622 0.84660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 8.97 127.69 1.15 1.50 16 2 N -0.55 -10.92 4.75 -927.04 -4.41 -15.33 16 3 C 0.05 0.72 5.07 86.30 0.44 1.16 16 4 C 0.12 2.18 5.60 86.38 0.48 2.66 16 5 N -0.70 -10.75 5.55 -470.74 -2.61 -13.36 16 6 C 0.63 14.52 7.65 85.49 0.65 15.17 16 7 O -0.57 -18.49 17.09 -4.10 -0.07 -18.56 16 8 C -0.27 -5.17 13.61 30.02 0.41 -4.77 16 9 C -0.02 -0.33 13.47 31.12 0.42 0.09 16 10 C -0.09 -0.64 6.21 -12.60 -0.08 -0.72 16 11 C -0.16 -0.65 10.21 30.62 0.31 -0.33 16 12 C -0.15 -0.43 10.21 30.62 0.31 -0.11 16 13 C 0.12 2.38 5.12 85.56 0.44 2.82 16 14 C -0.15 -4.57 4.89 -19.83 -0.10 -4.67 16 15 C -0.05 -1.57 9.69 22.25 0.22 -1.35 16 16 C -0.21 -8.96 9.99 22.39 0.22 -8.74 16 17 C 0.11 5.69 6.65 22.58 0.15 5.84 16 18 O -0.24 -14.42 9.76 -22.84 -0.22 -14.65 16 19 C -0.41 -24.45 9.49 67.92 0.64 -23.81 16 20 H 0.10 5.44 5.20 -2.91 -0.02 5.42 16 21 C -0.02 -1.31 5.49 84.83 0.47 -0.84 16 22 N -0.92 -57.40 13.67 21.61 0.30 -57.10 16 23 Si 1.02 43.40 29.55 68.60 2.03 45.42 16 24 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 25 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 26 H -0.25 -10.05 7.11 99.48 0.71 -9.34 16 27 C -0.24 -10.62 9.17 22.39 0.21 -10.42 16 28 C -0.06 -1.97 7.89 22.25 0.18 -1.79 16 29 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.06 1.53 5.89 -2.39 -0.01 1.52 16 31 H 0.07 1.41 6.47 -2.38 -0.02 1.40 16 32 H 0.06 0.61 8.12 -2.39 -0.02 0.59 16 33 H 0.10 1.02 7.93 -2.39 -0.02 1.00 16 34 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.06 1.27 6.55 -2.39 -0.02 1.25 16 36 H 0.42 3.56 8.44 -92.71 -0.78 2.78 16 37 H 0.15 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.09 0.56 8.14 -2.38 -0.02 0.54 16 39 H 0.13 0.05 8.14 -2.39 -0.02 0.03 16 40 H 0.13 -0.14 8.14 -2.39 -0.02 -0.16 16 41 H 0.10 0.35 8.14 -2.38 -0.02 0.33 16 42 H 0.05 0.93 8.06 -2.39 -0.02 0.91 16 43 H 0.10 1.61 7.87 -2.39 -0.02 1.59 16 44 H 0.15 3.84 8.06 -2.91 -0.02 3.82 16 45 H 0.11 4.74 8.06 -2.91 -0.02 4.72 16 46 H 0.27 15.52 8.31 -92.72 -0.77 14.75 16 47 H 0.12 5.15 5.64 -2.91 -0.02 5.14 16 48 H 0.14 3.62 7.98 -2.91 -0.02 3.60 16 Total: -1.00 -81.43 410.66 1.74 -79.70 By element: Atomic # 1 Polarization: 21.97 SS G_CDS: 0.21 Total: 22.18 kcal Atomic # 6 Polarization: -34.82 SS G_CDS: 6.52 Total: -28.30 kcal Atomic # 7 Polarization: -79.07 SS G_CDS: -6.72 Total: -85.80 kcal Atomic # 8 Polarization: -32.91 SS G_CDS: -0.29 Total: -33.20 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.42 kcal Total: -81.43 1.74 -79.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663181201.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.606 kcal (2) G-P(sol) polarization free energy of solvation -81.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds