Wall clock time and date at job start Wed Apr 1 2020 00:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36942 * 119.99978 * 2 1 4 4 H 1.08004 * 120.00245 * 154.66258 * 3 2 1 5 5 C 1.38815 * 120.00062 * 334.65949 * 3 2 1 6 6 N 1.31622 * 119.99508 * 4.07726 * 5 3 2 7 7 Si 1.86797 * 120.00036 * 184.07441 * 5 3 2 8 8 H 1.48500 * 109.47109 * 0.02562 * 7 5 3 9 9 H 1.48503 * 109.46967 * 119.99833 * 7 5 3 10 10 H 1.48495 * 109.47304 * 239.99984 * 7 5 3 11 11 C 1.46501 * 120.00148 * 179.97438 * 2 1 3 12 12 H 1.08999 * 109.49780 * 180.02562 * 11 2 1 13 13 C 1.53039 * 109.49603 * 59.93699 * 11 2 1 14 14 C 1.53042 * 109.53460 * 178.68521 * 13 11 2 15 15 C 1.53187 * 109.31341 * 61.36405 * 14 13 11 16 16 N 1.46920 * 108.77864 * 305.36443 * 15 14 13 17 17 C 1.34778 * 120.63105 * 233.61117 * 16 15 14 18 18 O 1.21278 * 120.00098 * 179.97438 * 17 16 15 19 19 C 1.50703 * 120.00045 * 359.97438 * 17 16 15 20 20 C 1.50703 * 109.47222 * 179.97438 * 19 17 16 21 21 C 1.33989 * 126.90601 * 265.03188 * 20 19 17 22 22 O 1.34455 * 110.15057 * 179.97438 * 21 20 19 23 23 C 1.34797 * 110.88906 * 359.97438 * 22 21 20 24 24 C 1.38948 * 133.49346 * 179.97438 * 23 22 21 25 25 C 1.37858 * 119.81382 * 179.33526 * 24 23 22 26 26 C 1.38739 * 120.68741 * 0.55778 * 25 24 23 27 27 C 1.36739 * 120.41754 * 359.64152 * 26 25 24 28 28 C 1.39411 * 119.71508 * 0.02562 * 27 26 25 29 29 C 1.46931 * 118.76492 * 53.58559 * 16 15 14 30 30 H 1.09000 * 109.46643 * 84.48636 * 1 2 3 31 31 H 1.09001 * 109.47351 * 204.48354 * 1 2 3 32 32 H 1.08998 * 109.47524 * 324.48949 * 1 2 3 33 33 H 0.97005 * 119.99235 * 180.02562 * 6 5 3 34 34 H 1.08995 * 109.45826 * 298.70645 * 13 11 2 35 35 H 1.09003 * 109.45772 * 58.66533 * 13 11 2 36 36 H 1.09004 * 109.49428 * 181.32142 * 14 13 11 37 37 H 1.09005 * 109.49729 * 301.41024 * 14 13 11 38 38 H 1.09001 * 109.58614 * 65.15486 * 15 14 13 39 39 H 1.08998 * 109.58566 * 185.57319 * 15 14 13 40 40 H 1.09002 * 109.47263 * 300.00717 * 19 17 16 41 41 H 1.09008 * 109.46685 * 60.00220 * 19 17 16 42 42 H 1.07999 * 124.92936 * 359.97438 * 21 20 19 43 43 H 1.07994 * 120.09219 * 359.97438 * 24 23 22 44 44 H 1.08001 * 119.65413 * 180.17901 * 25 24 23 45 45 H 1.07993 * 119.79162 * 179.66491 * 26 25 24 46 46 H 1.07993 * 120.14263 * 179.97438 * 27 26 25 47 47 H 1.08994 * 109.61622 * 186.64375 * 29 16 15 48 48 H 1.09005 * 109.56168 * 66.21489 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1518 1.2310 0.4003 5 6 1.5558 2.3303 -0.5145 6 7 0.3069 2.2942 -0.9285 7 14 2.5290 3.9213 -0.6193 8 1 3.8999 3.6985 -0.0937 9 1 2.6078 4.3610 -2.0355 10 1 1.8533 4.9689 0.1875 11 6 2.1975 -1.2687 0.0006 12 1 3.2692 -1.0700 0.0009 13 6 1.8270 -2.0730 -1.2476 14 6 2.6164 -3.3840 -1.2646 15 6 2.2496 -4.2122 -0.0293 16 7 2.4664 -3.3930 1.1709 17 6 3.2382 -3.8436 2.1797 18 8 3.4098 -3.1575 3.1650 19 6 3.8880 -5.1999 2.0835 20 6 4.6909 -5.4620 3.3316 21 6 6.0009 -5.2421 3.5065 22 8 6.3679 -5.5957 4.7508 23 6 5.3134 -6.0633 5.4482 24 6 5.1608 -6.5457 6.7423 25 6 3.9177 -6.9488 7.1813 26 6 2.8160 -6.8891 6.3402 27 6 2.9456 -6.4213 5.0618 28 6 4.1934 -6.0028 4.6023 29 6 1.8266 -2.0727 1.2507 30 1 -0.3632 0.0987 -1.0229 31 1 -0.3634 -0.9353 0.4259 32 1 -0.3634 0.8365 0.5969 33 1 -0.1080 3.0938 -1.2884 34 1 0.7594 -2.2920 -1.2348 35 1 2.0678 -1.4925 -2.1383 36 1 2.3696 -3.9456 -2.1657 37 1 3.6843 -3.1658 -1.2525 38 1 1.2020 -4.5080 -0.0855 39 1 2.8802 -5.1002 0.0156 40 1 3.1185 -5.9648 1.9786 41 1 4.5471 -5.2263 1.2157 42 1 6.6658 -4.8392 2.7569 43 1 6.0116 -6.5951 7.4056 44 1 3.8014 -7.3207 8.1886 45 1 1.8499 -7.2136 6.6974 46 1 2.0851 -6.3771 4.4107 47 1 2.1781 -1.5489 2.1396 48 1 0.7444 -2.1939 1.2994 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027630949.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:35:40 Heat of formation + Delta-G solvation = 23.719023 kcal Electronic energy + Delta-G solvation = -29731.370499 eV Core-core repulsion = 25753.601121 eV Total energy + Delta-G solvation = -3977.769378 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.173 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.58396 -39.93020 -37.99329 -37.46412 -35.08504 -34.04968 -32.33884 -31.34122 -30.75999 -30.10839 -29.02102 -27.75955 -26.00975 -24.87105 -23.53850 -23.39814 -22.44873 -21.66881 -20.75832 -19.37491 -18.54990 -17.50263 -17.24146 -17.01971 -16.72089 -16.10248 -15.93638 -15.46444 -15.28232 -14.82959 -14.29471 -14.10525 -13.94147 -13.90012 -13.75841 -13.31858 -13.15363 -12.90200 -12.64733 -12.57838 -12.42998 -12.26538 -12.20478 -11.94068 -11.74445 -11.08891 -11.03327 -10.99345 -10.78757 -10.65458 -10.36674 -10.27311 -10.21264 -10.11219 -9.90513 -9.79289 -9.51055 -8.77123 -8.54848 -8.34059 -8.28064 -6.73354 -5.72863 -3.20025 0.77881 1.22213 2.15123 2.67381 2.80343 3.23726 3.38199 3.45576 3.47840 3.59051 4.29166 4.37662 4.49047 4.67413 4.68635 4.79450 4.85364 4.97310 5.13941 5.14404 5.22126 5.27047 5.30480 5.30903 5.43590 5.44626 5.55932 5.59318 5.72818 5.77931 5.86410 5.99032 6.06736 6.10880 6.15176 6.23046 6.25681 6.29350 6.38223 6.47889 6.51553 6.67066 6.83090 6.94557 7.00012 7.02695 7.49978 7.64280 7.77952 7.86064 8.37820 8.44147 9.26228 9.86660 10.35765 11.31464 Molecular weight = 342.17amu Principal moments of inertia in cm(-1) A = 0.016245 B = 0.002471 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.234101 B =11330.858855 C =11767.819118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.165 3.835 2 N -0.596 5.596 3 C -0.253 4.253 4 H 0.069 0.931 5 C 0.005 3.995 6 N -0.909 5.909 7 Si 0.904 3.096 8 H -0.278 1.278 9 H -0.289 1.289 10 H -0.290 1.290 11 C 0.171 3.829 12 H 0.063 0.937 13 C -0.132 4.132 14 C -0.132 4.132 15 C 0.107 3.893 16 N -0.607 5.607 17 C 0.510 3.490 18 O -0.533 6.533 19 C -0.068 4.068 20 C -0.156 4.156 21 C 0.019 3.981 22 O -0.193 6.193 23 C 0.050 3.950 24 C -0.108 4.108 25 C -0.098 4.098 26 C -0.137 4.137 27 C -0.067 4.067 28 C -0.111 4.111 29 C 0.097 3.903 30 H 0.026 0.974 31 H -0.008 1.008 32 H 0.052 0.948 33 H 0.251 0.749 34 H 0.057 0.943 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.063 0.937 38 H 0.067 0.933 39 H 0.078 0.922 40 H 0.101 0.899 41 H 0.104 0.896 42 H 0.207 0.793 43 H 0.130 0.870 44 H 0.133 0.867 45 H 0.128 0.872 46 H 0.124 0.876 47 H 0.088 0.912 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.550 -23.091 7.091 25.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.319 5.319 3 C -0.383 4.383 4 H 0.086 0.914 5 C -0.193 4.193 6 N -0.555 5.555 7 Si 0.734 3.266 8 H -0.203 1.203 9 H -0.216 1.216 10 H -0.217 1.217 11 C 0.061 3.939 12 H 0.082 0.918 13 C -0.172 4.172 14 C -0.171 4.171 15 C -0.016 4.016 16 N -0.341 5.341 17 C 0.297 3.703 18 O -0.409 6.409 19 C -0.108 4.108 20 C -0.158 4.158 21 C -0.046 4.046 22 O -0.094 6.094 23 C 0.003 3.997 24 C -0.127 4.127 25 C -0.116 4.116 26 C -0.155 4.155 27 C -0.085 4.085 28 C -0.112 4.112 29 C -0.027 4.027 30 H 0.044 0.956 31 H 0.010 0.990 32 H 0.071 0.929 33 H 0.062 0.938 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.096 0.904 40 H 0.120 0.880 41 H 0.122 0.878 42 H 0.224 0.776 43 H 0.148 0.852 44 H 0.151 0.849 45 H 0.146 0.854 46 H 0.141 0.859 47 H 0.107 0.893 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.776 -22.516 7.677 24.735 hybrid contribution 0.205 1.052 -0.451 1.163 sum 6.981 -21.465 7.226 23.700 Atomic orbital electron populations 1.20867 0.82400 0.95280 0.99329 1.43893 1.01949 0.99979 1.86039 1.19280 0.99147 0.86282 1.33543 0.91366 1.25139 0.96571 0.98728 0.98836 1.70103 1.11194 1.27835 1.46359 0.86177 0.79574 0.83507 0.77336 1.20312 1.21601 1.21698 1.20568 0.96351 0.86242 0.90725 0.91829 1.22113 0.99454 0.94680 1.00932 1.21936 1.01067 0.97486 0.96639 1.21759 1.01364 0.93475 0.84994 1.48216 1.49204 1.19032 1.17668 1.20458 0.79049 0.87968 0.82856 1.90727 1.60980 1.58258 1.30911 1.20022 0.99507 0.95963 0.95302 1.20440 0.93724 1.06603 0.95043 1.23697 0.95913 1.00210 0.84763 1.83998 1.35006 1.67293 1.23088 1.19604 0.85205 1.00590 0.94310 1.19918 0.98696 1.02538 0.91502 1.20899 0.91383 0.99446 0.99829 1.20755 0.99095 1.01865 0.93816 1.20271 0.95334 0.96878 0.95989 1.19723 0.94580 1.03195 0.93695 1.22424 0.96835 0.81422 1.02007 0.95614 0.98978 0.92916 0.93815 0.92447 0.91551 0.91284 0.91776 0.91443 0.90358 0.88045 0.87804 0.77642 0.85185 0.84927 0.85448 0.85852 0.89338 0.91939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.06 7.99 59.84 0.48 4.54 16 2 N -0.60 -14.86 2.82 -173.35 -0.49 -15.35 16 3 C -0.25 -7.00 9.59 -15.06 -0.14 -7.15 16 4 H 0.07 1.88 7.81 -52.48 -0.41 1.47 16 5 C 0.01 0.14 5.38 -17.43 -0.09 0.05 16 6 N -0.91 -26.37 10.12 55.49 0.56 -25.80 16 7 Si 0.90 22.05 29.56 -169.99 -5.02 17.03 16 8 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 9 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 10 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 11 C 0.17 3.44 2.74 -67.81 -0.19 3.26 16 12 H 0.06 1.36 7.88 -51.93 -0.41 0.95 16 13 C -0.13 -2.23 5.15 -26.69 -0.14 -2.37 16 14 C -0.13 -1.60 6.08 -26.61 -0.16 -1.76 16 15 C 0.11 1.16 6.34 -3.72 -0.02 1.14 16 16 N -0.61 -8.91 2.97 -172.77 -0.51 -9.43 16 17 C 0.51 7.69 7.69 -10.98 -0.08 7.61 16 18 O -0.53 -10.56 15.45 5.56 0.09 -10.47 16 19 C -0.07 -0.71 4.60 -29.03 -0.13 -0.84 16 20 C -0.16 -1.91 4.85 -102.66 -0.50 -2.41 16 21 C 0.02 0.22 11.89 29.24 0.35 0.56 16 22 O -0.19 -2.47 10.58 3.93 0.04 -2.43 16 23 C 0.05 0.64 7.42 -38.47 -0.29 0.36 16 24 C -0.11 -1.13 10.07 -39.46 -0.40 -1.52 16 25 C -0.10 -0.88 10.01 -39.54 -0.40 -1.28 16 26 C -0.14 -1.32 9.98 -39.94 -0.40 -1.72 16 27 C -0.07 -0.77 10.05 -39.69 -0.40 -1.17 16 28 C -0.11 -1.45 6.38 -105.16 -0.67 -2.13 16 29 C 0.10 1.79 5.79 -3.71 -0.02 1.77 16 30 H 0.03 0.67 7.44 -51.93 -0.39 0.29 16 31 H -0.01 -0.18 6.36 -51.93 -0.33 -0.51 16 32 H 0.05 1.43 7.03 -51.93 -0.37 1.06 16 33 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 34 H 0.06 0.98 7.71 -51.93 -0.40 0.58 16 35 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.08 0.60 5.93 -51.93 -0.31 0.29 16 40 H 0.10 0.85 7.94 -51.93 -0.41 0.44 16 41 H 0.10 0.79 7.69 -51.92 -0.40 0.39 16 42 H 0.21 1.55 8.06 -52.49 -0.42 1.12 16 43 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 44 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 45 H 0.13 0.91 8.06 -52.49 -0.42 0.48 16 46 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 47 H 0.09 1.90 7.00 -51.93 -0.36 1.54 16 48 H 0.06 1.16 6.50 -51.93 -0.34 0.82 16 LS Contribution 385.30 15.07 5.81 5.81 Total: -1.00 -34.34 385.30 -9.80 -44.14 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -7.06 Total: -0.43 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: -3.20 Total: -3.07 kcal Atomic # 7 Polarization: -50.14 SS G_CDS: -0.44 Total: -50.58 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: 0.13 Total: -12.90 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.34 -9.80 -44.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027630949.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.863 kcal (2) G-P(sol) polarization free energy of solvation -34.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds