Wall clock time and date at job start Wed Apr 1 2020 01:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35615 * 116.99868 * 2 1 4 4 C 1.39158 * 120.50670 * 0.02745 * 3 2 1 5 5 C 1.38305 * 118.62840 * 179.72331 * 4 3 2 6 6 C 1.39943 * 119.59513 * 0.47522 * 5 4 3 7 7 N 1.38909 * 119.49492 * 179.78667 * 6 5 4 8 8 C 1.46503 * 119.99944 * 359.72654 * 7 6 5 9 9 C 1.52992 * 109.47148 * 179.97438 * 8 7 6 10 10 H 1.09002 * 109.47443 * 54.99657 * 9 8 7 11 11 C 1.53000 * 109.47229 * 295.00121 * 9 8 7 12 12 O 1.42904 * 109.47304 * 64.99803 * 11 9 8 13 13 C 1.52995 * 109.47245 * 175.00173 * 9 8 7 14 14 C 1.50707 * 109.47301 * 184.99829 * 13 9 8 15 15 C 1.38238 * 119.99792 * 90.00016 * 14 13 9 16 16 C 1.38235 * 119.99712 * 179.97438 * 15 14 13 17 17 C 1.38234 * 120.00220 * 359.97124 * 16 15 14 18 18 C 1.38233 * 120.00037 * 0.28719 * 17 16 15 19 19 C 1.38234 * 120.00179 * 269.97953 * 14 13 9 20 20 N 1.31864 * 121.00758 * 359.51378 * 6 5 4 21 21 C 1.33826 * 121.47460 * 0.25229 * 20 6 5 22 22 C 1.40907 * 119.84813 * 180.02562 * 21 20 6 23 23 H 1.08001 * 119.99955 * 179.97438 * 22 21 20 24 24 C 1.40029 * 120.00254 * 359.97438 * 22 21 20 25 25 N 1.30782 * 119.99865 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 120.00066 * 180.02562 * 24 22 21 27 27 H 1.48506 * 109.47364 * 90.00037 * 26 24 22 28 28 H 1.48499 * 109.47194 * 210.00204 * 26 24 22 29 29 H 1.48505 * 109.47281 * 330.00085 * 26 24 22 30 30 H 1.09000 * 109.47352 * 59.99702 * 1 2 3 31 31 H 1.08997 * 109.47340 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47036 * 299.99865 * 1 2 3 33 33 H 1.08001 * 120.68612 * 359.97438 * 4 3 2 34 34 H 1.07999 * 120.20171 * 180.25828 * 5 4 3 35 35 H 0.96995 * 120.00315 * 179.72830 * 7 6 5 36 36 H 1.09003 * 109.47052 * 59.99494 * 8 7 6 37 37 H 1.09006 * 109.47198 * 300.00370 * 8 7 6 38 38 H 1.08998 * 109.47630 * 185.00260 * 11 9 8 39 39 H 1.09005 * 109.47023 * 305.00007 * 11 9 8 40 40 H 0.96697 * 114.00060 * 180.02562 * 12 11 9 41 41 H 1.09005 * 109.47610 * 65.00133 * 13 9 8 42 42 H 1.09000 * 109.47256 * 304.99474 * 13 9 8 43 43 H 1.08005 * 120.00068 * 359.97438 * 15 14 13 44 44 H 1.07999 * 119.99770 * 179.97438 * 16 15 14 45 45 H 1.08002 * 119.99744 * 180.02562 * 17 16 15 46 46 H 1.07998 * 120.00395 * 179.72811 * 18 17 16 47 47 H 1.07999 * 119.99968 * 359.97438 * 19 14 13 48 48 H 0.97000 * 119.99903 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2083 0.0000 4 6 1.2970 2.3821 0.0006 5 6 1.9649 3.5931 0.0064 6 6 3.3643 3.6107 0.0015 7 7 4.0329 4.8283 0.0029 8 6 3.2735 6.0811 0.0034 9 6 4.2426 7.2649 0.0056 10 1 4.9297 7.1736 -0.8356 11 6 5.0361 7.2721 1.3137 12 8 5.8618 6.1074 1.3763 13 6 3.4538 8.5699 -0.1195 14 6 4.4123 9.7266 -0.2409 15 6 4.8443 10.1383 -1.4878 16 6 5.7231 11.1996 -1.5991 17 6 6.1693 11.8495 -0.4636 18 6 5.7414 11.4344 0.7836 19 6 4.8590 10.3761 0.8946 20 7 4.0577 2.4891 0.0009 21 6 3.4544 1.2946 0.0000 22 6 4.2291 0.1176 0.0000 23 1 3.7447 -0.8477 -0.0004 24 6 5.6270 0.1995 0.0003 25 7 6.2135 1.3684 0.0012 26 14 6.6539 -1.3608 -0.0004 27 1 6.9265 -1.7735 -1.4007 28 1 7.9387 -1.1082 0.7001 29 1 5.9131 -2.4414 0.6987 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 0.2176 2.3480 0.0006 34 1 1.4100 4.5196 0.0112 35 1 5.0027 4.8491 0.0034 36 1 2.6451 6.1247 0.8930 37 1 2.6462 6.1261 -0.8870 38 1 5.6617 8.1637 1.3544 39 1 4.3458 7.2739 2.1574 40 1 6.3942 6.0456 2.1812 41 1 2.8318 8.7049 0.7654 42 1 2.8207 8.5283 -1.0058 43 1 4.4953 9.6308 -2.3750 44 1 6.0609 11.5210 -2.5732 45 1 6.8555 12.6790 -0.5507 46 1 6.0934 11.9394 1.6710 47 1 4.5209 10.0549 1.8687 48 1 7.1819 1.4251 0.0019 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169899430.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:00:11 Heat of formation + Delta-G solvation = -24.673446 kcal Electronic energy + Delta-G solvation = -29121.592340 eV Core-core repulsion = 25141.724507 eV Total energy + Delta-G solvation = -3979.867833 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.173 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -39.75321 -38.70270 -37.70807 -36.53050 -34.98932 -33.94294 -32.82398 -31.11385 -30.52234 -30.14629 -28.42012 -26.38603 -26.05857 -25.19484 -24.51616 -22.76604 -21.78584 -21.31500 -20.15222 -20.04755 -17.40634 -17.17420 -16.96877 -16.44704 -16.23363 -15.66578 -15.44448 -15.05826 -14.81577 -14.64419 -14.51401 -14.14385 -13.80618 -13.59322 -13.31230 -13.18658 -12.97887 -12.89840 -12.54517 -12.28284 -12.21693 -11.93940 -11.88035 -11.44246 -11.37057 -11.20659 -11.12469 -11.09098 -10.85740 -10.57327 -10.43494 -10.34455 -10.23479 -9.77142 -9.67611 -9.32977 -9.09186 -8.86182 -8.25685 -7.85931 -7.50200 -6.24132 -6.06934 -4.23601 1.15048 1.19832 2.93902 3.18768 3.23473 3.26235 3.39387 3.55792 4.08208 4.15817 4.38005 4.59283 4.68219 4.76614 4.81025 4.90086 4.94450 5.00982 5.18975 5.27412 5.30650 5.33926 5.51538 5.55204 5.63068 5.71831 5.85149 5.87378 5.88502 5.89341 5.91696 6.06548 6.07995 6.19299 6.19940 6.26229 6.31007 6.33477 6.47493 6.52326 6.80631 6.86163 6.98290 7.33464 7.46561 7.65976 7.83212 7.85052 8.39955 8.42074 8.63833 8.90082 9.04189 9.35766 10.34480 10.49501 Molecular weight = 342.17amu Principal moments of inertia in cm(-1) A = 0.013733 B = 0.002546 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2038.342454 B =10995.764728 C =12487.679421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.313 6.313 3 C -0.082 4.082 4 C -0.113 4.113 5 C -0.352 4.352 6 C 0.397 3.603 7 N -0.726 5.726 8 C 0.152 3.848 9 C -0.093 4.093 10 H 0.084 0.916 11 C 0.081 3.919 12 O -0.557 6.557 13 C -0.073 4.073 14 C -0.076 4.076 15 C -0.115 4.115 16 C -0.118 4.118 17 C -0.128 4.128 18 C -0.120 4.120 19 C -0.118 4.118 20 N -0.512 5.512 21 C 0.290 3.710 22 C -0.415 4.415 23 H 0.089 0.911 24 C 0.067 3.933 25 N -0.710 5.710 26 Si 0.906 3.094 27 H -0.270 1.270 28 H -0.278 1.278 29 H -0.262 1.262 30 H 0.035 0.965 31 H 0.078 0.922 32 H 0.035 0.965 33 H 0.097 0.903 34 H 0.089 0.911 35 H 0.407 0.593 36 H 0.046 0.954 37 H 0.048 0.952 38 H 0.045 0.955 39 H 0.041 0.959 40 H 0.376 0.624 41 H 0.077 0.923 42 H 0.083 0.917 43 H 0.123 0.877 44 H 0.120 0.880 45 H 0.119 0.881 46 H 0.120 0.880 47 H 0.121 0.879 48 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.053 17.948 1.245 18.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.226 6.226 3 C -0.130 4.130 4 C -0.138 4.138 5 C -0.379 4.379 6 C 0.159 3.841 7 N -0.367 5.367 8 C 0.026 3.974 9 C -0.112 4.112 10 H 0.103 0.897 11 C 0.003 3.997 12 O -0.362 6.362 13 C -0.111 4.111 14 C -0.076 4.076 15 C -0.133 4.133 16 C -0.136 4.136 17 C -0.146 4.146 18 C -0.138 4.138 19 C -0.136 4.136 20 N -0.235 5.235 21 C 0.161 3.839 22 C -0.447 4.447 23 H 0.107 0.893 24 C -0.158 4.158 25 N -0.332 5.332 26 Si 0.730 3.270 27 H -0.196 1.196 28 H -0.204 1.204 29 H -0.186 1.186 30 H 0.054 0.946 31 H 0.097 0.903 32 H 0.054 0.946 33 H 0.115 0.885 34 H 0.107 0.893 35 H 0.246 0.754 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.059 0.941 40 H 0.224 0.776 41 H 0.096 0.904 42 H 0.101 0.899 43 H 0.141 0.859 44 H 0.138 0.862 45 H 0.137 0.863 46 H 0.138 0.862 47 H 0.139 0.861 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.298 17.901 0.671 17.916 hybrid contribution -0.231 -0.150 0.575 0.637 sum -0.529 17.751 1.246 17.803 Atomic orbital electron populations 1.22660 0.82413 1.01343 0.99552 1.85913 1.17656 1.28028 1.91016 1.20030 0.93463 0.83008 1.16501 1.20648 0.97084 0.92463 1.03585 1.20357 0.93027 0.96134 1.28353 1.18543 0.87607 0.86986 0.90998 1.44170 1.08702 1.00571 1.83224 1.20956 0.93155 0.83316 1.00010 1.21345 0.97477 0.93828 0.98576 0.89730 1.22249 0.92880 0.87767 0.96785 1.86479 1.60152 1.43889 1.45676 1.20545 0.96147 0.90722 1.03673 1.19905 0.97919 0.96535 0.93256 1.21113 0.97911 0.97065 0.97223 1.21155 0.97671 0.96228 0.98586 1.21133 1.00435 1.00235 0.92762 1.21133 0.97919 0.97246 0.97533 1.21079 0.98136 0.96224 0.98152 1.68414 1.34626 0.94891 1.25585 1.17794 0.84941 0.91174 0.89953 1.19502 0.90505 0.93081 1.41651 0.89270 1.26076 0.98759 0.96979 0.93961 1.70194 1.10061 1.24246 1.28669 0.86363 0.79096 0.82448 0.79080 1.19574 1.20351 1.18569 0.94603 0.90310 0.94623 0.88528 0.89269 0.75357 0.93618 0.93426 0.93736 0.94064 0.77638 0.90443 0.89888 0.85914 0.86162 0.86333 0.86234 0.86123 0.91969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.67 9.83 101.05 0.99 1.66 16 2 O -0.31 -7.61 9.61 -18.54 -0.18 -7.78 16 3 C -0.08 -2.19 6.74 -38.10 -0.26 -2.45 16 4 C -0.11 -2.74 9.12 -39.22 -0.36 -3.09 16 5 C -0.35 -8.46 9.33 -38.92 -0.36 -8.82 16 6 C 0.40 10.12 7.65 -155.26 -1.19 8.93 16 7 N -0.73 -15.42 5.17 -60.35 -0.31 -15.73 16 8 C 0.15 2.45 4.27 -4.04 -0.02 2.43 16 9 C -0.09 -1.18 2.28 -90.63 -0.21 -1.39 16 10 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 11 C 0.08 1.00 6.15 37.16 0.23 1.22 16 12 O -0.56 -8.29 10.88 -35.23 -0.38 -8.67 16 13 C -0.07 -0.72 4.84 -27.88 -0.13 -0.85 16 14 C -0.08 -0.75 4.72 -104.62 -0.49 -1.24 16 15 C -0.12 -1.12 9.70 -39.58 -0.38 -1.51 16 16 C -0.12 -1.06 10.05 -39.58 -0.40 -1.46 16 17 C -0.13 -1.09 10.05 -39.58 -0.40 -1.49 16 18 C -0.12 -1.03 10.05 -39.58 -0.40 -1.43 16 19 C -0.12 -1.08 7.87 -39.58 -0.31 -1.39 16 20 N -0.51 -14.67 7.88 -10.20 -0.08 -14.75 16 21 C 0.29 8.43 6.56 -84.85 -0.56 7.87 16 22 C -0.41 -11.78 8.94 -37.90 -0.34 -12.12 16 23 H 0.09 2.46 7.31 -52.49 -0.38 2.08 16 24 C 0.07 1.78 5.50 -17.33 -0.10 1.69 16 25 N -0.71 -19.38 11.45 55.55 0.64 -18.75 16 26 Si 0.91 19.47 29.56 -169.99 -5.02 14.45 16 27 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 28 H -0.28 -5.81 7.11 56.52 0.40 -5.40 16 29 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 30 H 0.04 0.61 7.69 -51.93 -0.40 0.21 16 31 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.04 0.61 7.69 -51.93 -0.40 0.21 16 33 H 0.10 2.03 6.44 -52.49 -0.34 1.69 16 34 H 0.09 1.91 6.67 -52.49 -0.35 1.56 16 35 H 0.41 9.03 6.41 -40.82 -0.26 8.77 16 36 H 0.05 0.74 7.90 -51.93 -0.41 0.33 16 37 H 0.05 0.76 7.93 -51.93 -0.41 0.35 16 38 H 0.04 0.49 5.92 -51.93 -0.31 0.18 16 39 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.38 4.16 9.12 45.56 0.42 4.58 16 41 H 0.08 0.68 8.09 -51.93 -0.42 0.26 16 42 H 0.08 0.76 8.09 -51.93 -0.42 0.34 16 43 H 0.12 1.08 8.06 -52.48 -0.42 0.65 16 44 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 45 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 46 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 47 H 0.12 0.95 7.99 -52.49 -0.42 0.53 16 48 H 0.27 6.69 8.29 -40.82 -0.34 6.35 16 LS Contribution 391.68 15.07 5.90 5.90 Total: -1.00 -33.56 391.68 -10.31 -43.88 By element: Atomic # 1 Polarization: 21.09 SS G_CDS: -6.20 Total: 14.89 kcal Atomic # 6 Polarization: -8.76 SS G_CDS: -4.67 Total: -13.43 kcal Atomic # 7 Polarization: -49.47 SS G_CDS: 0.24 Total: -49.23 kcal Atomic # 8 Polarization: -15.90 SS G_CDS: -0.56 Total: -16.46 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -5.02 Total: 14.45 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.56 -10.31 -43.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169899430.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.203 kcal (2) G-P(sol) polarization free energy of solvation -33.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds