Wall clock time and date at job start Wed Apr 1 2020 02:51:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86806 * 119.99898 * 2 1 4 4 H 1.48499 * 109.46921 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47115 * 300.00176 * 3 2 1 6 6 H 1.48502 * 109.46775 * 60.00595 * 3 2 1 7 7 C 1.38797 * 120.00224 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00468 * 179.97438 * 7 2 1 9 9 S 1.76198 * 119.99805 * 0.02562 * 7 2 1 10 10 C 1.81002 * 100.00244 * 179.97438 * 9 7 2 11 11 C 1.50692 * 109.47097 * 179.97438 * 10 9 7 12 12 O 1.21275 * 120.00342 * 0.02562 * 11 10 9 13 13 N 1.34782 * 119.99748 * 179.97438 * 11 10 9 14 14 C 1.46500 * 120.00118 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.47174 * 180.02562 * 14 13 11 16 16 C 1.53122 * 109.51984 * 184.99835 * 15 14 13 17 17 C 1.53044 * 109.27607 * 182.37533 * 16 15 14 18 18 N 1.46847 * 109.52096 * 59.17812 * 17 16 15 19 19 C 1.46902 * 110.99718 * 174.15897 * 18 17 16 20 20 C 1.52999 * 109.47012 * 176.18070 * 19 18 17 21 21 H 1.09003 * 110.43578 * 299.92946 * 20 19 18 22 22 C 1.54808 * 110.48839 * 177.24657 * 20 19 18 23 23 C 1.54998 * 102.09321 * 220.44353 * 22 20 19 24 24 O 1.44388 * 103.48967 * 37.02152 * 23 22 20 25 25 C 1.43746 * 106.97475 * 319.94079 * 24 23 22 26 26 C 1.46844 * 111.20294 * 298.25999 * 18 17 16 27 27 C 1.53036 * 109.52492 * 61.74113 * 26 18 17 28 28 H 0.97006 * 119.99790 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.46924 * 59.99835 * 10 9 7 30 30 H 1.09004 * 109.46942 * 299.99876 * 10 9 7 31 31 H 0.96999 * 119.99861 * 0.02562 * 13 11 10 32 32 H 1.09000 * 109.47343 * 59.99624 * 14 13 11 33 33 H 1.09004 * 109.46987 * 299.99989 * 14 13 11 34 34 H 1.08996 * 109.52232 * 305.12381 * 15 14 13 35 35 H 1.08998 * 109.50294 * 62.43507 * 16 15 14 36 36 H 1.09000 * 109.53670 * 302.33377 * 16 15 14 37 37 H 1.09003 * 109.46055 * 299.16557 * 17 16 15 38 38 H 1.08996 * 109.45329 * 179.18938 * 17 16 15 39 39 H 1.08995 * 109.46870 * 56.18169 * 19 18 17 40 40 H 1.09001 * 109.47309 * 296.18241 * 19 18 17 41 41 H 1.09006 * 110.90472 * 338.63785 * 22 20 19 42 42 H 1.08996 * 110.91306 * 102.24168 * 22 20 19 43 43 H 1.08998 * 110.61908 * 278.52044 * 23 22 20 44 44 H 1.08995 * 110.75633 * 155.58581 * 23 22 20 45 45 H 1.08999 * 109.87501 * 267.09186 * 25 24 23 46 46 H 1.08996 * 110.00433 * 146.00740 * 25 24 23 47 47 H 1.08994 * 109.46371 * 181.76018 * 26 18 17 48 48 H 1.09006 * 109.45991 * 301.72514 * 26 18 17 49 49 H 1.08997 * 109.50582 * 180.88755 * 27 26 18 50 50 H 1.08995 * 109.50341 * 60.75891 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8916 2.3964 1.2126 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1294 -2.7279 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9874 -5.3026 0.0012 12 8 0.7912 -5.5022 0.0011 13 7 2.8442 -6.3431 0.0008 14 6 2.3305 -7.7150 0.0008 15 6 3.5025 -8.6985 0.0009 16 6 2.9703 -10.1287 -0.1248 17 6 4.1424 -11.1110 -0.0645 18 7 4.8565 -10.9454 1.2079 19 6 5.9028 -11.9651 1.3610 20 6 6.6854 -11.7034 2.6493 21 1 7.1528 -10.7192 2.6175 22 6 7.7504 -12.8051 2.8697 23 6 7.6526 -13.0505 4.3970 24 8 6.2407 -12.9197 4.6694 25 6 5.7601 -11.8217 3.8759 26 6 5.4171 -9.5937 1.3302 27 6 4.2832 -8.5661 1.3116 28 1 -0.4850 0.8401 0.0004 29 1 3.1245 -3.7313 0.8905 30 1 3.1245 -3.7314 -0.8895 31 1 3.8009 -6.1834 0.0004 32 1 1.7215 -7.8751 -0.8889 33 1 1.7222 -7.8752 0.8910 34 1 4.1615 -8.4799 -0.8393 35 1 2.4499 -10.2411 -1.0758 36 1 2.2807 -10.3343 0.6940 37 1 4.8241 -10.9142 -0.8919 38 1 3.7654 -12.1310 -0.1392 39 1 6.5807 -11.9207 0.5087 40 1 5.4436 -12.9525 1.4090 41 1 7.4969 -13.7078 2.3137 42 1 8.7429 -12.4472 2.5960 43 1 8.2203 -12.2976 4.9438 44 1 8.0013 -14.0515 4.6505 45 1 5.7961 -10.9005 4.4576 46 1 4.7377 -12.0154 3.5516 47 1 5.9661 -9.5117 2.2682 48 1 6.0929 -9.4040 0.4963 49 1 4.7006 -7.5620 1.3865 50 1 3.6145 -8.7467 2.1532 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222425578.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:51:26 Heat of formation + Delta-G solvation = -93.803473 kcal Electronic energy + Delta-G solvation = -27157.093569 eV Core-core repulsion = 23309.671985 eV Total energy + Delta-G solvation = -3847.421585 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.176 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.40030 -39.47534 -38.68020 -35.88066 -33.75938 -32.42727 -32.14369 -31.24675 -29.97729 -29.25119 -27.08435 -25.50266 -24.84134 -23.70432 -22.98580 -22.04043 -20.65526 -20.28159 -19.86074 -17.85378 -17.13065 -16.61011 -16.41803 -16.08612 -15.89826 -15.46220 -15.34499 -15.13548 -14.80458 -14.75121 -14.42235 -14.08192 -13.84416 -13.65333 -13.30862 -13.18265 -12.88556 -12.80395 -12.64215 -12.55597 -12.24771 -11.95774 -11.75990 -11.58909 -11.48402 -11.44706 -11.21375 -11.07184 -11.01743 -10.94503 -10.82800 -10.70398 -10.47966 -10.02777 -9.80032 -9.37534 -9.07599 -8.84672 -8.73971 -8.22276 -6.49360 -6.21551 -3.91878 3.05748 3.13011 3.21462 3.28446 3.33328 3.36703 3.55913 3.74239 4.07209 4.18266 4.20521 4.36268 4.39760 4.47658 4.55251 4.72143 4.73139 4.84048 4.89592 4.98103 5.00078 5.09993 5.13649 5.15776 5.19480 5.21658 5.26838 5.27240 5.37030 5.42133 5.42553 5.47360 5.54535 5.58929 5.63022 5.68032 5.73237 5.81425 5.83668 5.90593 5.94472 6.13223 6.14630 6.47281 6.62689 6.67062 6.67267 7.59987 7.73429 8.35584 8.64497 9.23870 10.85919 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.019953 B = 0.001679 C = 0.001602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.990545 B =16668.028923 C =17471.254424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.153 4.153 11 C 0.531 3.469 12 O -0.518 6.518 13 N -0.738 5.738 14 C 0.127 3.873 15 C -0.099 4.099 16 C -0.109 4.109 17 C 0.059 3.941 18 N -0.537 5.537 19 C 0.065 3.935 20 C -0.125 4.125 21 H 0.085 0.915 22 C -0.151 4.151 23 C 0.046 3.954 24 O -0.381 6.381 25 C 0.057 3.943 26 C 0.050 3.950 27 C -0.113 4.113 28 H 0.268 0.732 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.396 0.604 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.033 0.967 38 H 0.076 0.924 39 H 0.035 0.965 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.059 0.941 44 H 0.091 0.909 45 H 0.055 0.945 46 H 0.098 0.902 47 H 0.079 0.921 48 H 0.032 0.968 49 H 0.069 0.931 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.732 -28.039 2.919 33.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.317 3.683 12 O -0.392 6.392 13 N -0.393 5.393 14 C 0.003 3.997 15 C -0.118 4.118 16 C -0.147 4.147 17 C -0.069 4.069 18 N -0.262 5.262 19 C -0.062 4.062 20 C -0.144 4.144 21 H 0.104 0.896 22 C -0.189 4.189 23 C -0.031 4.031 24 O -0.300 6.300 25 C -0.020 4.020 26 C -0.077 4.077 27 C -0.151 4.151 28 H 0.078 0.922 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.230 0.770 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.095 0.905 37 H 0.051 0.949 38 H 0.094 0.906 39 H 0.053 0.947 40 H 0.098 0.902 41 H 0.097 0.903 42 H 0.098 0.902 43 H 0.077 0.923 44 H 0.109 0.891 45 H 0.074 0.926 46 H 0.116 0.884 47 H 0.097 0.903 48 H 0.051 0.949 49 H 0.088 0.912 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 15.077 -28.458 3.432 32.387 hybrid contribution 3.244 1.676 -0.884 3.757 sum 18.321 -26.782 2.548 32.549 Atomic orbital electron populations 1.70032 1.05946 1.27330 1.46953 1.24995 0.95027 0.99029 0.94563 0.86118 0.79568 0.81905 0.77902 1.19642 1.20573 1.20556 1.22911 0.94938 0.91677 1.58812 0.90897 1.85408 1.04984 0.96322 1.96701 1.23530 1.06525 0.95524 1.04832 1.20292 0.86543 0.86288 0.75203 1.90701 1.15397 1.85630 1.47506 1.46017 1.09795 1.05599 1.77910 1.21297 0.95532 0.80464 1.02391 1.21443 0.96898 0.95050 0.98426 1.21557 0.97491 0.92832 1.02830 1.22057 0.95575 0.99960 0.89317 1.61981 1.26947 1.02925 1.34346 1.22132 0.92387 0.96082 0.95637 1.22692 0.95993 0.99847 0.95890 0.89633 1.23183 0.99269 0.99183 0.97240 1.23525 0.83405 1.01987 0.94172 1.88894 1.22334 1.52349 1.66429 1.23198 0.99168 0.89751 0.89839 1.22204 0.96275 0.88245 1.01008 1.21670 0.97329 0.98117 0.97953 0.92239 0.89289 0.89318 0.76999 0.91682 0.91485 0.90899 0.91007 0.90464 0.94864 0.90577 0.94667 0.90212 0.90273 0.90216 0.92282 0.89060 0.92635 0.88363 0.90320 0.94934 0.91247 0.90546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.24 13.22 55.49 0.73 -25.50 16 2 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.43 29.55 -169.99 -5.02 16.41 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.54 -15.29 9.50 30.94 0.29 -15.00 16 8 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 9 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 10 C -0.15 -3.10 6.16 36.00 0.22 -2.88 16 11 C 0.53 9.93 7.85 -10.99 -0.09 9.84 16 12 O -0.52 -11.91 15.86 5.56 0.09 -11.82 16 13 N -0.74 -9.69 5.31 -60.30 -0.32 -10.01 16 14 C 0.13 1.44 5.07 -4.04 -0.02 1.42 16 15 C -0.10 -0.79 2.29 -90.49 -0.21 -1.00 16 16 C -0.11 -0.78 5.38 -26.65 -0.14 -0.92 16 17 C 0.06 0.38 5.46 -3.83 -0.02 0.36 16 18 N -0.54 -3.59 4.24 -234.67 -0.99 -4.58 16 19 C 0.07 0.38 4.30 -3.82 -0.02 0.36 16 20 C -0.13 -0.70 2.49 -89.09 -0.22 -0.93 16 21 H 0.09 0.46 6.26 -51.93 -0.32 0.14 16 22 C -0.15 -0.71 6.71 -24.72 -0.17 -0.88 16 23 C 0.05 0.27 7.72 38.21 0.29 0.56 16 24 O -0.38 -3.47 11.52 -35.23 -0.41 -3.87 16 25 C 0.06 0.43 7.12 37.73 0.27 0.70 16 26 C 0.05 0.33 5.05 -3.84 -0.02 0.31 16 27 C -0.11 -0.86 5.23 -26.65 -0.14 -1.00 16 28 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 29 H 0.09 1.65 8.14 -51.91 -0.42 1.23 16 30 H 0.09 1.65 8.14 -51.91 -0.42 1.23 16 31 H 0.40 4.05 7.69 -40.82 -0.31 3.74 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.03 0.22 8.14 -51.93 -0.42 -0.21 16 38 H 0.08 0.45 8.12 -51.93 -0.42 0.03 16 39 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 40 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.08 0.36 7.87 -51.93 -0.41 -0.05 16 42 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 44 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.10 0.81 7.44 -51.93 -0.39 0.42 16 47 H 0.08 0.49 5.81 -51.93 -0.30 0.19 16 48 H 0.03 0.22 8.14 -51.93 -0.42 -0.20 16 49 H 0.07 0.52 7.28 -51.93 -0.38 0.14 16 50 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 404.25 15.07 6.09 6.09 Total: -1.00 -34.66 404.25 -10.94 -45.61 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -8.84 Total: -1.41 kcal Atomic # 6 Polarization: -6.98 SS G_CDS: -0.06 Total: -7.04 kcal Atomic # 7 Polarization: -39.51 SS G_CDS: -0.58 Total: -40.09 kcal Atomic # 8 Polarization: -15.38 SS G_CDS: -0.32 Total: -15.69 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -34.66 -10.94 -45.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222425578.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.197 kcal (2) G-P(sol) polarization free energy of solvation -34.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds