Wall clock time and date at job start Wed Apr 1 2020 02:51:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86792 * 120.00322 * 2 1 4 4 H 1.48504 * 109.47241 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47170 * 300.00175 * 3 2 1 6 6 H 1.48507 * 109.46973 * 60.00136 * 3 2 1 7 7 C 1.38805 * 119.99302 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99518 * 179.97438 * 7 2 1 9 9 S 1.76189 * 120.00357 * 0.02562 * 7 2 1 10 10 C 1.80998 * 100.00217 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47594 * 180.02562 * 10 9 7 12 12 O 1.21284 * 119.99944 * 359.97438 * 11 10 9 13 13 N 1.34778 * 120.00416 * 180.02562 * 11 10 9 14 14 C 1.46501 * 120.00145 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.46880 * 179.97438 * 14 13 11 16 16 C 1.53122 * 109.52123 * 175.00269 * 15 14 13 17 17 C 1.53033 * 109.31036 * 177.54196 * 16 15 14 18 18 N 1.46854 * 109.52229 * 300.88029 * 17 16 15 19 19 C 1.46899 * 110.99480 * 185.80218 * 18 17 16 20 20 C 1.53002 * 109.47139 * 169.82851 * 19 18 17 21 21 H 1.09005 * 110.45337 * 54.54227 * 20 19 18 22 22 C 1.54508 * 110.51416 * 177.14919 * 20 19 18 23 23 C 1.54475 * 104.06404 * 118.64530 * 22 20 19 24 24 O 1.44428 * 104.80349 * 23.98102 * 23 22 20 25 25 C 1.44426 * 105.27456 * 319.48515 * 24 23 22 26 26 C 1.46845 * 111.23040 * 61.68446 * 18 17 16 27 27 C 1.53038 * 109.52360 * 298.27463 * 26 18 17 28 28 H 0.97001 * 119.99938 * 359.97438 * 1 2 3 29 29 H 1.09005 * 109.47313 * 59.99854 * 10 9 7 30 30 H 1.09001 * 109.47041 * 300.00033 * 10 9 7 31 31 H 0.97005 * 119.99335 * 0.02562 * 13 11 10 32 32 H 1.08997 * 109.46737 * 60.00054 * 14 13 11 33 33 H 1.09001 * 109.47243 * 300.00168 * 14 13 11 34 34 H 1.09002 * 109.52399 * 54.87236 * 15 14 13 35 35 H 1.08998 * 109.49967 * 297.50052 * 16 15 14 36 36 H 1.08999 * 109.50159 * 57.58064 * 16 15 14 37 37 H 1.08999 * 109.46508 * 60.85363 * 17 16 15 38 38 H 1.09002 * 109.46419 * 180.82448 * 17 16 15 39 39 H 1.08996 * 109.47260 * 289.82960 * 19 18 17 40 40 H 1.09005 * 109.47457 * 49.83388 * 19 18 17 41 41 H 1.09001 * 110.50935 * 237.29044 * 22 20 19 42 42 H 1.08999 * 110.50829 * 359.86014 * 22 20 19 43 43 H 1.08998 * 110.37400 * 142.80946 * 23 22 20 44 44 H 1.09000 * 110.37459 * 265.03561 * 23 22 20 45 45 H 1.08998 * 110.37207 * 281.68491 * 25 24 23 46 46 H 1.08996 * 110.37485 * 159.34246 * 25 24 23 47 47 H 1.09003 * 109.45891 * 178.26182 * 26 18 17 48 48 H 1.08997 * 109.46558 * 58.29505 * 26 18 17 49 49 H 1.09005 * 109.50344 * 299.24265 * 27 26 18 50 50 H 1.08998 * 109.53829 * 179.14593 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7104 1.3462 0.0006 5 1 1.8916 2.3963 -1.2124 6 1 1.8916 2.3963 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 16 1.1291 -2.7280 0.0005 10 6 2.5155 -3.8915 0.0005 11 6 1.9871 -5.3028 -0.0001 12 8 0.7907 -5.5023 0.0000 13 7 2.8437 -6.3433 0.0003 14 6 2.3299 -7.7152 0.0003 15 6 3.5019 -8.6987 0.0001 16 6 2.9697 -10.1289 0.1258 17 6 4.1409 -11.1120 0.0635 18 7 4.8544 -10.9453 -1.2092 19 6 5.9004 -11.9651 -1.3637 20 6 6.4470 -11.9227 -2.7921 21 1 6.7849 -10.9166 -3.0409 22 6 7.5991 -12.9382 -2.9613 23 6 7.0869 -13.9095 -4.0477 24 8 6.1079 -13.1500 -4.7898 25 6 5.3748 -12.4006 -3.7964 26 6 5.4150 -9.5936 -1.3314 27 6 4.2813 -8.5659 -1.3112 28 1 -0.4850 0.8401 0.0004 29 1 3.1242 -3.7315 0.8905 30 1 3.1242 -3.7315 -0.8895 31 1 3.8006 -6.1836 0.0014 32 1 1.7216 -7.8753 -0.8899 33 1 1.7209 -7.8752 0.8900 34 1 4.1610 -8.4801 0.8403 35 1 2.4503 -10.2416 1.0774 36 1 2.2790 -10.3334 -0.6923 37 1 4.8237 -10.9163 0.8903 38 1 3.7634 -12.1318 0.1381 39 1 6.7082 -11.7665 -0.6594 40 1 5.4792 -12.9507 -1.1650 41 1 8.5060 -12.4345 -3.2961 42 1 7.7809 -13.4687 -2.0266 43 1 7.9049 -14.2144 -4.7004 44 1 6.6235 -14.7826 -3.5882 45 1 4.6472 -13.0414 -3.2983 46 1 4.8778 -11.5464 -4.2559 47 1 5.9631 -9.5113 -2.2700 48 1 6.0917 -9.4044 -0.4981 49 1 3.6118 -8.7460 -2.1523 50 1 4.6982 -7.5616 -1.3866 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222425579.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:51:31 Heat of formation + Delta-G solvation = -96.160358 kcal Electronic energy + Delta-G solvation = -27072.728985 eV Core-core repulsion = 23225.205199 eV Total energy + Delta-G solvation = -3847.523787 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.176 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.32200 -39.49088 -38.69424 -35.86795 -33.76802 -32.42583 -32.15098 -31.23931 -29.95447 -29.25694 -27.04536 -25.49367 -24.74216 -23.74659 -23.12509 -21.98313 -20.60681 -20.37740 -19.88774 -17.85608 -17.16760 -16.45997 -16.25844 -15.96269 -15.84633 -15.73416 -15.30775 -15.12553 -14.80276 -14.78795 -14.42410 -14.10059 -13.98094 -13.51425 -13.47313 -13.18227 -12.87531 -12.81076 -12.65870 -12.55643 -12.14788 -11.97207 -11.72992 -11.62140 -11.51201 -11.40492 -11.11814 -11.06888 -11.01504 -10.94117 -10.82897 -10.70637 -10.49128 -10.16497 -9.79865 -9.37500 -9.07385 -8.84753 -8.75101 -8.22123 -6.49199 -6.21399 -3.91667 3.05858 3.13012 3.21675 3.28658 3.33311 3.34213 3.60674 3.74277 4.14845 4.20756 4.22010 4.36680 4.41923 4.45329 4.54929 4.61156 4.80930 4.85487 4.91313 4.98610 4.98902 5.11631 5.13844 5.14794 5.16897 5.20608 5.26403 5.28045 5.33392 5.41311 5.44281 5.47741 5.54453 5.56249 5.63525 5.67670 5.72872 5.81171 5.82804 5.90768 5.94327 6.12917 6.14842 6.40449 6.61967 6.66438 6.66906 7.60235 7.73400 8.35797 8.64492 9.24045 10.86122 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.021679 B = 0.001634 C = 0.001574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.289926 B =17136.070406 C =17780.652215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.153 4.153 11 C 0.531 3.469 12 O -0.518 6.518 13 N -0.738 5.738 14 C 0.127 3.873 15 C -0.099 4.099 16 C -0.109 4.109 17 C 0.059 3.941 18 N -0.538 5.538 19 C 0.065 3.935 20 C -0.120 4.120 21 H 0.085 0.915 22 C -0.152 4.152 23 C 0.045 3.955 24 O -0.380 6.380 25 C 0.061 3.939 26 C 0.053 3.947 27 C -0.113 4.113 28 H 0.268 0.732 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.396 0.604 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.033 0.967 38 H 0.075 0.925 39 H 0.036 0.964 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.089 0.911 44 H 0.058 0.942 45 H 0.063 0.937 46 H 0.093 0.907 47 H 0.077 0.923 48 H 0.033 0.967 49 H 0.076 0.924 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.767 -29.169 -2.340 33.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.317 3.683 12 O -0.392 6.392 13 N -0.393 5.393 14 C 0.003 3.997 15 C -0.118 4.118 16 C -0.147 4.147 17 C -0.069 4.069 18 N -0.262 5.262 19 C -0.063 4.063 20 C -0.139 4.139 21 H 0.104 0.896 22 C -0.190 4.190 23 C -0.032 4.032 24 O -0.299 6.299 25 C -0.015 4.015 26 C -0.074 4.074 27 C -0.150 4.150 28 H 0.078 0.922 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.230 0.770 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.095 0.905 37 H 0.051 0.949 38 H 0.094 0.906 39 H 0.055 0.945 40 H 0.095 0.905 41 H 0.094 0.906 42 H 0.095 0.905 43 H 0.107 0.893 44 H 0.076 0.924 45 H 0.081 0.919 46 H 0.112 0.888 47 H 0.095 0.905 48 H 0.051 0.949 49 H 0.094 0.906 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 14.208 -29.461 -2.942 32.840 hybrid contribution 3.131 1.490 0.983 3.604 sum 17.339 -27.972 -1.959 32.968 Atomic orbital electron populations 1.70030 1.05949 1.27333 1.46954 1.24995 0.95027 0.99031 0.94558 0.86115 0.79568 0.81895 0.77900 1.19641 1.20558 1.20574 1.22913 0.94942 0.91680 1.58816 0.90896 1.85402 1.04986 0.96320 1.96701 1.23530 1.06525 0.95515 1.04839 1.20297 0.86544 0.86291 0.75196 1.90703 1.15393 1.85636 1.47517 1.46017 1.09803 1.05593 1.77905 1.21296 0.95526 0.80476 1.02381 1.21443 0.96911 0.95036 0.98431 1.21554 0.97492 0.92854 1.02809 1.22061 0.95551 0.99885 0.89410 1.61907 1.27091 1.02958 1.34275 1.22146 0.93097 0.95944 0.95139 1.22593 0.95404 1.00386 0.95518 0.89633 1.22986 0.98760 0.97422 0.99858 1.23374 0.91994 0.94216 0.93626 1.89146 1.49548 1.60694 1.30532 1.23375 0.93624 0.95679 0.88841 1.22158 0.96189 0.88093 1.00993 1.21667 0.97326 0.98138 0.97918 0.92240 0.89316 0.89283 0.76987 0.91489 0.91692 0.90884 0.91019 0.90482 0.94897 0.90631 0.94529 0.90533 0.90564 0.90457 0.89281 0.92380 0.91925 0.88828 0.90455 0.94902 0.90554 0.91220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.25 13.22 55.49 0.73 -25.51 16 2 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.45 29.55 -169.99 -5.02 16.43 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.54 -15.31 9.50 30.94 0.29 -15.02 16 8 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 9 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 10 C -0.15 -3.10 6.16 36.00 0.22 -2.88 16 11 C 0.53 9.93 7.85 -10.99 -0.09 9.84 16 12 O -0.52 -11.90 15.86 5.55 0.09 -11.81 16 13 N -0.74 -9.68 5.31 -60.30 -0.32 -10.00 16 14 C 0.13 1.44 5.07 -4.04 -0.02 1.42 16 15 C -0.10 -0.78 2.29 -90.50 -0.21 -0.99 16 16 C -0.11 -0.76 5.38 -26.65 -0.14 -0.90 16 17 C 0.06 0.37 5.46 -3.83 -0.02 0.34 16 18 N -0.54 -3.49 4.50 -234.67 -1.06 -4.55 16 19 C 0.06 0.35 4.10 -3.82 -0.02 0.34 16 20 C -0.12 -0.69 3.05 -89.05 -0.27 -0.96 16 21 H 0.09 0.53 6.28 -51.93 -0.33 0.21 16 22 C -0.15 -0.73 6.74 -25.17 -0.17 -0.90 16 23 C 0.04 0.26 7.63 37.93 0.29 0.55 16 24 O -0.38 -3.46 11.65 -35.23 -0.41 -3.87 16 25 C 0.06 0.45 7.04 37.94 0.27 0.71 16 26 C 0.05 0.36 5.30 -3.83 -0.02 0.34 16 27 C -0.11 -0.86 5.22 -26.65 -0.14 -0.99 16 28 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 29 H 0.09 1.65 8.14 -51.91 -0.42 1.23 16 30 H 0.09 1.66 8.14 -51.92 -0.42 1.23 16 31 H 0.40 4.05 7.69 -40.82 -0.31 3.74 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.03 0.21 8.14 -51.93 -0.42 -0.21 16 38 H 0.08 0.42 8.02 -51.93 -0.42 0.00 16 39 H 0.04 0.20 8.12 -51.93 -0.42 -0.22 16 40 H 0.08 0.39 7.86 -51.93 -0.41 -0.02 16 41 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.08 0.28 7.73 -51.93 -0.40 -0.12 16 43 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 45 H 0.06 0.44 7.78 -51.93 -0.40 0.04 16 46 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.08 0.50 6.14 -51.93 -0.32 0.18 16 48 H 0.03 0.22 8.14 -51.93 -0.42 -0.20 16 49 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 50 H 0.07 0.52 7.27 -51.93 -0.38 0.14 16 LS Contribution 405.27 15.07 6.11 6.11 Total: -1.00 -34.70 405.27 -11.06 -45.76 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -8.85 Total: -1.57 kcal Atomic # 6 Polarization: -6.99 SS G_CDS: -0.12 Total: -7.11 kcal Atomic # 7 Polarization: -39.42 SS G_CDS: -0.64 Total: -40.06 kcal Atomic # 8 Polarization: -15.36 SS G_CDS: -0.32 Total: -15.68 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -34.70 -11.06 -45.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222425579.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.401 kcal (2) G-P(sol) polarization free energy of solvation -34.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds