Wall clock time and date at job start Wed Apr 1 2020 02:04:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86793 * 120.00183 * 2 1 4 4 H 1.48504 * 109.47244 * 269.99762 * 3 2 1 5 5 H 1.48498 * 109.47205 * 29.99491 * 3 2 1 6 6 H 1.48496 * 109.47344 * 149.99974 * 3 2 1 7 7 C 1.38795 * 119.99575 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00171 * 359.97438 * 7 2 1 9 9 S 1.76198 * 119.99810 * 180.02562 * 7 2 1 10 10 C 1.81002 * 100.00092 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47178 * 180.02562 * 10 9 7 12 12 O 1.21278 * 119.99985 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00161 * 180.02562 * 11 10 9 14 14 C 1.46496 * 120.00271 * 180.02562 * 13 11 10 15 15 H 1.09005 * 109.47129 * 34.99449 * 14 13 11 16 16 C 1.53002 * 109.46916 * 274.99861 * 14 13 11 17 17 C 1.52997 * 109.47086 * 180.02562 * 16 14 13 18 18 C 1.52997 * 109.47347 * 59.99730 * 17 16 14 19 19 C 1.53002 * 109.47248 * 300.00171 * 18 17 16 20 20 C 1.52997 * 109.47387 * 154.99671 * 14 13 11 21 21 H 1.09005 * 109.47168 * 59.99802 * 20 14 13 22 22 N 1.46905 * 109.47165 * 299.99965 * 20 14 13 23 23 C 1.46898 * 111.00118 * 154.99827 * 22 20 14 24 24 C 1.52997 * 109.47445 * 180.02562 * 23 22 20 25 25 H 1.09004 * 110.80084 * 308.63202 * 24 23 22 26 26 C 1.54806 * 110.91263 * 185.00173 * 24 23 22 27 27 C 1.54096 * 104.18775 * 220.92219 * 26 24 23 28 28 O 1.43739 * 107.29454 * 357.96965 * 27 26 24 29 29 C 1.44379 * 106.97715 * 26.51222 * 28 27 26 30 30 H 0.97007 * 119.99682 * 0.02562 * 1 2 3 31 31 H 1.09002 * 109.47154 * 300.00093 * 10 9 7 32 32 H 1.09001 * 109.47171 * 60.00111 * 10 9 7 33 33 H 0.97005 * 119.99463 * 359.97438 * 13 11 10 34 34 H 1.09005 * 109.46885 * 299.99737 * 16 14 13 35 35 H 1.08991 * 109.47341 * 59.99644 * 16 14 13 36 36 H 1.09005 * 109.46998 * 299.99612 * 17 16 14 37 37 H 1.08999 * 109.47103 * 179.97438 * 17 16 14 38 38 H 1.09000 * 109.47324 * 180.02562 * 18 17 16 39 39 H 1.09005 * 109.47168 * 59.99986 * 18 17 16 40 40 H 1.09005 * 109.46885 * 299.99987 * 19 18 17 41 41 H 1.09005 * 109.47471 * 180.02562 * 19 18 17 42 42 H 1.00903 * 110.99505 * 31.04803 * 22 20 14 43 43 H 1.09003 * 109.47324 * 300.00075 * 23 22 20 44 44 H 1.09003 * 109.47463 * 59.99765 * 23 22 20 45 45 H 1.09002 * 110.48497 * 339.59784 * 26 24 23 46 46 H 1.08999 * 110.48833 * 102.10655 * 26 24 23 47 47 H 1.09006 * 109.88010 * 117.39314 * 27 26 24 48 48 H 1.09002 * 109.87829 * 238.54351 * 27 26 24 49 49 H 1.09006 * 110.61706 * 201.44090 * 29 28 27 50 50 H 1.08996 * 110.61558 * 78.44714 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 2.4980 2.0463 -1.4001 5 1 1.4478 2.6526 0.6999 6 1 3.5479 1.4401 0.7000 7 6 2.0102 -1.2020 0.0005 8 1 1.4702 -2.1374 0.0014 9 16 3.7722 -1.2021 0.0012 10 6 4.0865 -2.9847 0.0025 11 6 5.5729 -3.2327 0.0039 12 8 6.3439 -2.2965 0.0035 13 7 6.0456 -4.4949 0.0045 14 6 7.4905 -4.7360 0.0064 15 1 7.9867 -3.9654 0.5965 16 6 8.0161 -4.6960 -1.4299 17 6 9.5251 -4.9484 -1.4280 18 6 9.8117 -6.3220 -0.8182 19 6 9.2861 -6.3621 0.6182 20 6 7.7777 -6.1094 0.6165 21 1 7.2815 -6.8800 0.0264 22 7 7.2730 -6.1478 1.9956 23 6 6.9788 -7.5260 2.4104 24 6 6.4562 -7.5254 3.8483 25 1 7.1268 -6.9696 4.5037 26 6 6.2534 -8.9712 4.3632 27 6 4.9280 -8.9106 5.1468 28 8 4.4720 -7.5479 5.1105 29 6 5.0175 -6.9526 3.9136 30 1 -0.4850 0.8401 -0.0004 31 1 3.6432 -3.4311 0.8927 32 1 3.6439 -3.4323 -0.8873 33 1 5.4288 -5.2436 0.0045 34 1 7.5199 -5.4666 -2.0200 35 1 7.8116 -3.7176 -1.8645 36 1 10.0216 -4.1781 -0.8379 37 1 9.8995 -4.9204 -2.4513 38 1 10.8868 -6.5017 -0.8164 39 1 9.3152 -7.0924 -1.4083 40 1 9.7826 -5.5918 1.2083 41 1 9.4906 -7.3406 1.0529 42 1 6.4612 -5.5577 2.1001 43 1 6.2231 -7.9508 1.7497 44 1 7.8882 -8.1244 2.3542 45 1 6.1710 -9.6658 3.5272 46 1 7.0741 -9.2611 5.0193 47 1 4.1898 -9.5611 4.6775 48 1 5.0934 -9.2187 6.1792 49 1 5.0404 -5.8663 4.0014 50 1 4.4434 -7.2559 3.0381 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224924062.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:04:45 Heat of formation + Delta-G solvation = -104.529548 kcal Electronic energy + Delta-G solvation = -28206.989930 eV Core-core repulsion = 24359.103228 eV Total energy + Delta-G solvation = -3847.886702 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.176 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.33765 -39.65946 -38.27513 -35.70320 -34.16480 -32.61874 -32.44262 -30.59137 -30.16011 -28.87458 -27.77772 -25.61630 -25.16193 -22.94442 -22.69768 -21.71848 -20.90542 -20.42544 -20.00143 -17.94232 -17.05436 -16.84148 -16.47069 -16.04962 -15.70645 -15.46508 -15.22949 -14.97868 -14.90147 -14.59582 -14.25706 -14.07109 -13.91869 -13.49909 -13.28577 -13.23389 -13.04345 -12.85112 -12.80111 -12.52304 -12.06853 -11.90857 -11.66283 -11.59407 -11.41204 -11.27710 -11.13650 -11.01412 -11.01289 -10.91733 -10.87241 -10.62562 -10.39458 -9.96862 -9.85874 -9.53080 -9.05207 -8.99312 -8.79655 -8.51306 -6.92656 -6.29417 -4.01334 2.72893 2.92409 3.26582 3.33127 3.50312 3.54170 3.62111 3.71920 4.19696 4.31136 4.32824 4.41046 4.53316 4.62434 4.71063 4.72508 4.78677 4.87591 4.92923 4.94574 4.98477 5.07562 5.09780 5.16647 5.18429 5.23194 5.29177 5.34304 5.37027 5.47171 5.49476 5.53415 5.60315 5.65216 5.71941 5.75674 5.79702 5.87061 5.90516 5.93900 5.97897 6.09094 6.16951 6.50534 6.56329 6.68914 7.01968 7.52346 7.93587 8.40902 8.44461 9.16762 10.79851 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.008693 B = 0.003124 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3220.389246 B = 8961.599168 C =11770.552183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.088 0.912 9 S -0.139 6.139 10 C -0.125 4.125 11 C 0.533 3.467 12 O -0.513 6.513 13 N -0.738 5.738 14 C 0.146 3.854 15 H 0.097 0.903 16 C -0.128 4.128 17 C -0.117 4.117 18 C -0.121 4.121 19 C -0.103 4.103 20 C 0.084 3.916 21 H 0.048 0.952 22 N -0.687 5.687 23 C 0.070 3.930 24 C -0.121 4.121 25 H 0.097 0.903 26 C -0.150 4.150 27 C 0.046 3.954 28 O -0.375 6.375 29 C 0.047 3.953 30 H 0.271 0.729 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.394 0.606 34 H 0.062 0.938 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.060 0.940 40 H 0.073 0.927 41 H 0.063 0.937 42 H 0.347 0.653 43 H 0.032 0.968 44 H 0.076 0.924 45 H 0.075 0.925 46 H 0.078 0.922 47 H 0.057 0.943 48 H 0.083 0.917 49 H 0.097 0.903 50 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.223 -21.682 3.135 28.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.113 4.113 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.670 4.670 8 H 0.106 0.894 9 S 0.087 5.913 10 C -0.276 4.276 11 C 0.319 3.681 12 O -0.387 6.387 13 N -0.392 5.392 14 C 0.041 3.959 15 H 0.115 0.885 16 C -0.168 4.168 17 C -0.156 4.156 18 C -0.159 4.159 19 C -0.142 4.142 20 C -0.026 4.026 21 H 0.066 0.934 22 N -0.320 5.320 23 C -0.059 4.059 24 C -0.140 4.140 25 H 0.115 0.885 26 C -0.189 4.189 27 C -0.031 4.031 28 O -0.294 6.294 29 C -0.030 4.030 30 H 0.081 0.919 31 H 0.115 0.885 32 H 0.114 0.886 33 H 0.228 0.772 34 H 0.081 0.919 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.079 0.921 40 H 0.092 0.908 41 H 0.082 0.918 42 H 0.167 0.833 43 H 0.051 0.949 44 H 0.095 0.905 45 H 0.094 0.906 46 H 0.097 0.903 47 H 0.075 0.925 48 H 0.101 0.899 49 H 0.115 0.885 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 19.807 -19.890 3.589 28.298 hybrid contribution -1.894 -1.078 -0.737 2.301 sum 17.913 -20.968 2.852 27.725 Atomic orbital electron populations 1.69944 1.05925 1.27773 1.48036 1.24712 0.94449 0.98968 0.93163 0.86737 0.81920 0.83291 0.79912 1.19235 1.19923 1.15888 1.22314 0.88294 0.97520 1.58827 0.89426 1.84797 1.09249 0.99847 1.97416 1.23293 0.94027 1.04577 1.05712 1.20271 0.90528 0.82270 0.75022 1.90706 1.58697 1.42052 1.47219 1.46111 1.07221 1.08034 1.77825 1.21095 0.81125 0.96956 0.96748 0.88455 1.21917 0.95743 1.02861 0.96234 1.21508 0.95710 0.97219 1.01117 1.21579 1.00854 0.97514 0.95925 1.21484 0.93746 1.02293 0.96655 1.21766 0.96723 0.95898 0.88193 0.93392 1.60457 1.39035 1.09710 1.22753 1.21961 0.99698 0.90311 0.93915 1.22792 0.97756 0.96135 0.97312 0.88511 1.22956 0.98375 0.97006 1.00520 1.23148 0.94417 0.84639 1.00938 1.88918 1.73326 1.24199 1.42977 1.23704 0.91779 0.99400 0.88116 0.91932 0.88537 0.88608 0.77222 0.91947 0.90742 0.91478 0.91697 0.91655 0.92133 0.90811 0.91826 0.83259 0.94949 0.90520 0.90643 0.90295 0.92457 0.89906 0.88487 0.92289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.58 13.97 55.49 0.78 -25.80 16 2 C 0.10 2.80 5.50 -17.43 -0.10 2.70 16 3 Si 0.86 21.78 27.74 -169.99 -4.71 17.07 16 4 H -0.27 -6.72 7.11 56.52 0.40 -6.31 16 5 H -0.27 -6.72 7.11 56.52 0.40 -6.31 16 6 H -0.23 -5.96 6.74 56.52 0.38 -5.58 16 7 C -0.52 -14.97 10.04 30.94 0.31 -14.66 16 8 H 0.09 2.62 8.03 -52.48 -0.42 2.20 16 9 S -0.14 -3.49 18.55 -107.50 -1.99 -5.48 16 10 C -0.13 -2.35 6.16 36.01 0.22 -2.13 16 11 C 0.53 8.96 7.81 -10.98 -0.09 8.87 16 12 O -0.51 -10.61 15.53 5.56 0.09 -10.52 16 13 N -0.74 -8.64 4.14 -53.81 -0.22 -8.87 16 14 C 0.15 1.55 2.02 -67.93 -0.14 1.41 16 15 H 0.10 1.30 7.58 -51.93 -0.39 0.90 16 16 C -0.13 -1.30 5.49 -26.73 -0.15 -1.45 16 17 C -0.12 -0.97 5.92 -26.73 -0.16 -1.13 16 18 C -0.12 -0.83 5.92 -26.73 -0.16 -0.98 16 19 C -0.10 -0.77 5.42 -26.76 -0.15 -0.91 16 20 C 0.08 0.69 2.04 -67.74 -0.14 0.55 16 21 H 0.05 0.37 7.80 -51.93 -0.40 -0.04 16 22 N -0.69 -5.80 6.31 -106.75 -0.67 -6.47 16 23 C 0.07 0.49 4.87 -3.83 -0.02 0.47 16 24 C -0.12 -0.91 3.34 -88.62 -0.30 -1.20 16 25 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 26 C -0.15 -0.94 6.60 -25.21 -0.17 -1.11 16 27 C 0.05 0.36 7.70 37.73 0.29 0.65 16 28 O -0.38 -4.26 11.52 -35.23 -0.41 -4.67 16 29 C 0.05 0.43 6.62 38.21 0.25 0.69 16 30 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 31 H 0.10 1.67 8.14 -51.92 -0.42 1.25 16 32 H 0.10 1.68 8.14 -51.92 -0.42 1.26 16 33 H 0.39 3.63 8.60 -40.82 -0.35 3.28 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.06 0.43 7.45 -51.93 -0.39 0.04 16 42 H 0.35 3.27 7.03 -39.29 -0.28 2.99 16 43 H 0.03 0.21 7.89 -51.93 -0.41 -0.20 16 44 H 0.08 0.50 7.43 -51.93 -0.39 0.11 16 45 H 0.07 0.39 7.86 -51.93 -0.41 -0.01 16 46 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 48 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 49 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 50 H 0.06 0.51 7.93 -51.93 -0.41 0.10 16 LS Contribution 404.06 15.07 6.09 6.09 Total: -1.00 -33.36 404.06 -10.45 -43.82 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -8.92 Total: 3.08 kcal Atomic # 6 Polarization: -7.76 SS G_CDS: -0.47 Total: -8.23 kcal Atomic # 7 Polarization: -41.02 SS G_CDS: -0.12 Total: -41.15 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: -0.32 Total: -15.19 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.71 Total: 17.07 kcal Atomic # 16 Polarization: -3.49 SS G_CDS: -1.99 Total: -5.48 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -33.36 -10.45 -43.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224924062.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.712 kcal (2) G-P(sol) polarization free energy of solvation -33.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds