Wall clock time and date at job start Wed Apr 1 2020 02:04:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31637 * 1 3 3 Si 1.86796 * 119.99995 * 2 1 4 4 H 1.48506 * 109.47147 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47191 * 299.99800 * 3 2 1 6 6 H 1.48494 * 109.47425 * 60.00289 * 3 2 1 7 7 C 1.38798 * 119.99854 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00012 * 179.97438 * 7 2 1 9 9 S 1.76200 * 119.99955 * 0.02562 * 7 2 1 10 10 C 1.81005 * 100.00159 * 179.97438 * 9 7 2 11 11 C 1.50694 * 109.47112 * 180.02562 * 10 9 7 12 12 O 1.21281 * 120.00490 * 359.97438 * 11 10 9 13 13 N 1.34776 * 119.99959 * 180.02562 * 11 10 9 14 14 C 1.46497 * 120.00544 * 179.97438 * 13 11 10 15 15 H 1.09010 * 109.46932 * 34.99736 * 14 13 11 16 16 C 1.53001 * 109.47142 * 275.00240 * 14 13 11 17 17 C 1.53003 * 109.46908 * 179.97438 * 16 14 13 18 18 C 1.53002 * 109.47076 * 59.99743 * 17 16 14 19 19 C 1.52996 * 109.47255 * 299.99664 * 18 17 16 20 20 C 1.52998 * 109.47637 * 154.99304 * 14 13 11 21 21 H 1.09010 * 109.46607 * 60.00233 * 20 14 13 22 22 N 1.46901 * 109.47516 * 300.00795 * 20 14 13 23 23 C 1.46898 * 111.00018 * 154.99556 * 22 20 14 24 24 C 1.53004 * 109.46688 * 179.97438 * 23 22 20 25 25 H 1.09002 * 110.45859 * 54.30065 * 24 23 22 26 26 C 1.54508 * 110.51118 * 176.90413 * 24 23 22 27 27 C 1.54483 * 104.06393 * 118.77944 * 26 24 23 28 28 O 1.44424 * 104.80039 * 23.98041 * 27 26 24 29 29 C 1.44427 * 105.27650 * 319.48511 * 28 27 26 30 30 H 0.97000 * 119.99250 * 359.97438 * 1 2 3 31 31 H 1.08993 * 109.46979 * 59.99464 * 10 9 7 32 32 H 1.09002 * 109.46626 * 299.99594 * 10 9 7 33 33 H 0.97001 * 119.99779 * 359.97438 * 13 11 10 34 34 H 1.09003 * 109.46669 * 299.98891 * 16 14 13 35 35 H 1.08988 * 109.47416 * 59.99399 * 16 14 13 36 36 H 1.09002 * 109.47118 * 179.97438 * 17 16 14 37 37 H 1.08996 * 109.47272 * 299.99715 * 17 16 14 38 38 H 1.08996 * 109.47094 * 59.99863 * 18 17 16 39 39 H 1.09000 * 109.46686 * 179.97438 * 18 17 16 40 40 H 1.08996 * 109.47232 * 300.00114 * 19 18 17 41 41 H 1.08996 * 109.47378 * 179.97438 * 19 18 17 42 42 H 1.00897 * 110.99579 * 278.95129 * 22 20 14 43 43 H 1.08996 * 109.47166 * 59.99970 * 23 22 20 44 44 H 1.08996 * 109.47290 * 299.99175 * 23 22 20 45 45 H 1.08999 * 110.51389 * 237.42673 * 26 24 23 46 46 H 1.09004 * 110.51267 * 0.14056 * 26 24 23 47 47 H 1.08995 * 110.36874 * 142.81279 * 27 26 24 48 48 H 1.08998 * 110.37268 * 265.03810 * 27 26 24 49 49 H 1.08999 * 110.37600 * 281.68204 * 29 28 27 50 50 H 1.09000 * 110.37247 * 159.34210 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.7104 1.3463 -0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8917 2.3964 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2021 0.0001 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8915 0.0005 11 6 1.9872 -5.3027 -0.0001 12 8 0.7910 -5.5023 0.0000 13 7 2.8439 -6.3432 0.0003 14 6 2.3303 -7.7151 0.0003 15 1 1.4146 -7.7602 -0.5895 16 6 2.0331 -8.1485 1.4372 17 6 1.4960 -9.5812 1.4370 18 6 2.5413 -10.5176 0.8276 19 6 2.8384 -10.0843 -0.6093 20 6 3.3758 -8.6513 -0.6090 21 1 4.2915 -8.6062 -0.0192 22 7 3.6611 -8.2351 -1.9887 23 6 5.0016 -8.6701 -2.4032 24 6 5.2615 -8.2199 -3.8422 25 1 5.1032 -7.1459 -3.9399 26 6 6.6952 -8.5975 -4.2771 27 6 6.4855 -9.5535 -5.4723 28 8 5.1803 -9.2158 -5.9902 29 6 4.3551 -8.9924 -4.8262 30 1 -0.4849 0.8401 0.0004 31 1 3.1244 -3.7314 0.8904 32 1 3.1243 -3.7315 -0.8895 33 1 3.8007 -6.1836 0.0006 34 1 2.9488 -8.1035 2.0269 35 1 1.2883 -7.4817 1.8712 36 1 1.2848 -9.8901 2.4608 37 1 0.5804 -9.6259 0.8474 38 1 3.4569 -10.4729 1.4173 39 1 2.1588 -11.5383 0.8280 40 1 1.9228 -10.1290 -1.1989 41 1 3.5834 -10.7511 -1.0433 42 1 2.9567 -8.5800 -2.6233 43 1 5.0650 -9.7567 -2.3457 44 1 5.7476 -8.2271 -1.7434 45 1 7.2457 -7.7102 -4.5898 46 1 7.2181 -9.1071 -3.4677 47 1 7.2498 -9.3858 -6.2310 48 1 6.5058 -10.5905 -5.1370 49 1 4.0467 -9.9432 -4.3914 50 1 3.4829 -8.3936 -5.0886 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224924063.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:04:58 Heat of formation + Delta-G solvation = -105.657084 kcal Electronic energy + Delta-G solvation = -27987.876503 eV Core-core repulsion = 24139.940907 eV Total energy + Delta-G solvation = -3847.935596 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.176 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.21622 -39.62419 -38.14297 -35.67246 -33.87259 -32.66040 -32.38299 -30.40694 -30.08123 -28.75077 -27.60855 -25.43548 -25.01472 -23.16692 -22.67887 -21.81174 -20.84591 -20.19173 -19.93380 -17.78482 -16.98064 -16.78136 -16.16313 -16.03575 -15.86253 -15.36440 -15.20478 -14.79645 -14.76668 -14.40739 -14.13560 -14.04526 -13.59441 -13.46943 -13.43522 -13.10883 -12.96150 -12.90310 -12.57142 -12.45911 -11.94251 -11.88139 -11.62450 -11.47231 -11.34566 -11.21296 -11.04359 -11.02472 -10.96914 -10.95102 -10.83268 -10.71270 -10.43169 -10.15679 -9.75074 -9.25089 -9.03323 -8.72061 -8.61908 -8.16226 -6.43616 -6.17528 -3.86859 3.12460 3.23872 3.25728 3.31536 3.37256 3.57385 3.67851 3.81750 4.24954 4.25359 4.39141 4.43326 4.50826 4.57061 4.68616 4.73784 4.82596 4.90399 4.95478 5.02931 5.10755 5.15983 5.17667 5.19280 5.24301 5.27063 5.32394 5.34051 5.43175 5.47165 5.51074 5.58900 5.65685 5.70342 5.73643 5.77967 5.85692 5.92156 5.94665 6.00040 6.17400 6.22689 6.24509 6.41839 6.70545 6.82580 7.05655 7.64248 7.91553 8.39936 8.79168 9.28029 10.89970 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.009359 B = 0.002685 C = 0.002186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2991.101360 B =10423.889529 C =12806.664653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.072 3.928 3 Si 0.918 3.082 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.533 4.533 8 H 0.072 0.928 9 S -0.062 6.062 10 C -0.152 4.152 11 C 0.534 3.466 12 O -0.523 6.523 13 N -0.719 5.719 14 C 0.163 3.837 15 H 0.086 0.914 16 C -0.131 4.131 17 C -0.118 4.118 18 C -0.116 4.116 19 C -0.145 4.145 20 C 0.082 3.918 21 H 0.082 0.918 22 N -0.680 5.680 23 C 0.070 3.930 24 C -0.122 4.122 25 H 0.097 0.903 26 C -0.150 4.150 27 C 0.044 3.956 28 O -0.375 6.375 29 C 0.047 3.953 30 H 0.267 0.733 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.396 0.604 34 H 0.062 0.938 35 H 0.074 0.926 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.068 0.932 41 H 0.062 0.938 42 H 0.343 0.657 43 H 0.030 0.970 44 H 0.076 0.924 45 H 0.078 0.922 46 H 0.077 0.923 47 H 0.090 0.910 48 H 0.057 0.943 49 H 0.055 0.945 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.626 -25.102 -3.431 28.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.137 4.137 3 Si 0.744 3.256 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.681 4.681 8 H 0.090 0.910 9 S 0.165 5.835 10 C -0.302 4.302 11 C 0.321 3.679 12 O -0.398 6.398 13 N -0.371 5.371 14 C 0.057 3.943 15 H 0.104 0.896 16 C -0.171 4.171 17 C -0.156 4.156 18 C -0.154 4.154 19 C -0.185 4.185 20 C -0.028 4.028 21 H 0.100 0.900 22 N -0.309 5.309 23 C -0.059 4.059 24 C -0.141 4.141 25 H 0.115 0.885 26 C -0.188 4.188 27 C -0.033 4.033 28 O -0.294 6.294 29 C -0.030 4.030 30 H 0.077 0.923 31 H 0.104 0.896 32 H 0.107 0.893 33 H 0.230 0.770 34 H 0.080 0.920 35 H 0.093 0.907 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.087 0.913 41 H 0.081 0.919 42 H 0.162 0.838 43 H 0.049 0.951 44 H 0.094 0.906 45 H 0.097 0.903 46 H 0.096 0.904 47 H 0.108 0.892 48 H 0.075 0.925 49 H 0.073 0.927 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 11.615 -24.659 -3.501 27.481 hybrid contribution 2.412 0.376 0.123 2.444 sum 14.026 -24.283 -3.378 28.246 Atomic orbital electron populations 1.70037 1.05929 1.27241 1.47155 1.24992 0.95020 0.99001 0.94653 0.86128 0.79600 0.81974 0.77855 1.19638 1.20599 1.20617 1.22915 0.94921 0.91745 1.58536 0.90967 1.85370 1.05175 0.96279 1.96680 1.23510 1.06331 0.95687 1.04701 1.20210 0.86534 0.86216 0.74982 1.90683 1.15418 1.85590 1.48108 1.45784 1.09657 1.04782 1.76893 1.20758 0.97042 0.81053 0.95469 0.89629 1.21966 1.01740 0.96492 0.96880 1.21511 0.98545 0.94443 1.01073 1.21493 0.99459 0.99057 0.95369 1.22233 1.01445 0.96687 0.98119 1.21872 0.98597 0.92398 0.89964 0.90028 1.60511 1.03544 1.64010 1.02876 1.22023 0.91578 0.97294 0.94999 1.22597 0.94462 1.02527 0.94506 0.88510 1.22972 0.96976 1.00450 0.98432 1.23409 0.86111 0.97754 0.96064 1.89152 1.21260 1.90240 1.28744 1.23535 0.94783 0.98717 0.85935 0.92310 0.89562 0.89348 0.77008 0.91964 0.90680 0.91688 0.91610 0.91948 0.91929 0.91330 0.91942 0.83842 0.95137 0.90571 0.90294 0.90443 0.89158 0.92506 0.92685 0.88634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.47 13.22 55.49 0.73 -25.73 16 2 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.66 29.55 -169.99 -5.02 16.63 16 4 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.53 -15.38 9.50 30.94 0.29 -15.08 16 8 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 9 S -0.06 -1.70 20.57 -107.50 -2.21 -3.91 16 10 C -0.15 -3.12 6.16 36.00 0.22 -2.90 16 11 C 0.53 10.05 7.81 -10.99 -0.09 9.97 16 12 O -0.52 -11.89 15.53 5.56 0.09 -11.80 16 13 N -0.72 -9.67 4.91 -53.81 -0.26 -9.93 16 14 C 0.16 1.86 2.11 -67.93 -0.14 1.71 16 15 H 0.09 1.20 7.58 -51.92 -0.39 0.80 16 16 C -0.13 -1.42 5.50 -26.73 -0.15 -1.57 16 17 C -0.12 -1.01 5.92 -26.73 -0.16 -1.17 16 18 C -0.12 -0.79 5.92 -26.73 -0.16 -0.95 16 19 C -0.15 -0.99 5.17 -26.71 -0.14 -1.13 16 20 C 0.08 0.66 1.99 -67.69 -0.13 0.53 16 21 H 0.08 0.63 7.80 -51.92 -0.40 0.22 16 22 N -0.68 -5.54 6.08 -106.70 -0.65 -6.19 16 23 C 0.07 0.47 4.69 -3.82 -0.02 0.45 16 24 C -0.12 -0.89 3.36 -89.05 -0.30 -1.19 16 25 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 26 C -0.15 -0.94 6.74 -25.16 -0.17 -1.11 16 27 C 0.04 0.30 7.63 37.94 0.29 0.59 16 28 O -0.38 -3.79 11.65 -35.23 -0.41 -4.20 16 29 C 0.05 0.38 6.44 37.94 0.24 0.62 16 30 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 31 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 32 H 0.09 1.72 8.14 -51.91 -0.42 1.29 16 33 H 0.40 4.47 8.60 -40.82 -0.35 4.12 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.07 1.03 8.14 -51.94 -0.42 0.61 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.07 0.50 8.13 -51.93 -0.42 0.07 16 41 H 0.06 0.38 7.45 -51.93 -0.39 -0.01 16 42 H 0.34 2.78 7.76 -39.29 -0.31 2.47 16 43 H 0.03 0.18 7.31 -51.93 -0.38 -0.20 16 44 H 0.08 0.51 8.05 -51.93 -0.42 0.09 16 45 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.08 0.39 7.73 -51.93 -0.40 -0.02 16 47 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 49 H 0.05 0.39 7.79 -51.93 -0.40 -0.02 16 50 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 407.45 15.07 6.14 6.14 Total: -1.00 -34.44 407.45 -11.01 -45.45 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -8.91 Total: 2.77 kcal Atomic # 6 Polarization: -8.73 SS G_CDS: -0.50 Total: -9.22 kcal Atomic # 7 Polarization: -41.67 SS G_CDS: -0.18 Total: -41.85 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: -0.32 Total: -16.00 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -34.44 -11.01 -45.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224924063.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.208 kcal (2) G-P(sol) polarization free energy of solvation -34.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds