Wall clock time and date at job start Wed Apr 1 2020 02:23:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86795 * 120.00105 * 2 1 4 4 H 1.48502 * 109.47362 * 269.99787 * 3 2 1 5 5 H 1.48500 * 109.47077 * 29.99647 * 3 2 1 6 6 H 1.48500 * 109.47234 * 149.99436 * 3 2 1 7 7 C 1.38799 * 119.99644 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00388 * 0.02562 * 7 2 1 9 9 S 1.76204 * 119.99679 * 180.02562 * 7 2 1 10 10 C 1.80996 * 99.99993 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.47397 * 180.02562 * 10 9 7 12 12 O 1.21283 * 120.00089 * 359.97438 * 11 10 9 13 13 N 1.34779 * 120.00151 * 180.02562 * 11 10 9 14 14 C 1.46925 * 120.63076 * 0.02562 * 13 11 10 15 15 C 1.53191 * 108.77423 * 233.58539 * 14 13 11 16 16 C 1.53037 * 109.31499 * 305.36620 * 15 14 13 17 17 C 1.53043 * 109.53919 * 61.36673 * 16 15 14 18 18 H 1.09000 * 109.49902 * 58.58363 * 17 16 15 19 19 C 1.52996 * 109.49773 * 178.68399 * 17 16 15 20 20 N 1.46900 * 109.47373 * 184.83437 * 19 17 16 21 21 C 1.46893 * 111.00510 * 180.02562 * 20 19 17 22 22 C 1.53004 * 109.47502 * 180.02562 * 21 20 19 23 23 H 1.09003 * 110.43338 * 303.91095 * 22 21 20 24 24 C 1.54805 * 110.49113 * 181.21816 * 22 21 20 25 25 C 1.54988 * 102.09337 * 220.44323 * 24 22 21 26 26 O 1.44384 * 103.49150 * 37.02478 * 25 24 22 27 27 C 1.43742 * 106.97244 * 319.93644 * 26 25 24 28 28 C 1.46926 * 120.63009 * 180.02562 * 13 11 10 29 29 H 0.97003 * 120.00025 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.47556 * 59.99803 * 10 9 7 31 31 H 1.09004 * 109.47163 * 300.00118 * 10 9 7 32 32 H 1.08998 * 109.58340 * 353.37494 * 14 13 11 33 33 H 1.09003 * 109.58494 * 113.66059 * 14 13 11 34 34 H 1.08997 * 109.49512 * 65.31959 * 15 14 13 35 35 H 1.09005 * 109.49659 * 185.37937 * 15 14 13 36 36 H 1.08997 * 109.46383 * 181.38282 * 16 15 14 37 37 H 1.09001 * 109.46057 * 301.34715 * 16 15 14 38 38 H 1.08997 * 109.47349 * 304.83465 * 19 17 16 39 39 H 1.09004 * 109.47089 * 64.83707 * 19 17 16 40 40 H 1.00902 * 110.99634 * 56.04672 * 20 19 17 41 41 H 1.09006 * 109.47034 * 299.99895 * 21 20 19 42 42 H 1.09000 * 109.47387 * 59.99745 * 21 20 19 43 43 H 1.09006 * 110.90494 * 338.63977 * 24 22 21 44 44 H 1.09001 * 110.91013 * 102.24213 * 24 22 21 45 45 H 1.09002 * 110.61855 * 278.52048 * 25 24 22 46 46 H 1.09006 * 110.75481 * 155.58892 * 25 24 22 47 47 H 1.08997 * 109.88491 * 267.09094 * 27 26 25 48 48 H 1.09002 * 109.87571 * 145.93513 * 27 26 25 49 49 H 1.09006 * 109.58406 * 246.20036 * 28 13 11 50 50 H 1.09002 * 109.59019 * 6.62024 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7002 7 6 2.0102 -1.2021 0.0005 8 1 1.4703 -2.1373 0.0005 9 16 3.7723 -1.2021 0.0012 10 6 4.0866 -2.9845 0.0009 11 6 5.5730 -3.2326 0.0021 12 8 6.3440 -2.2964 0.0025 13 7 6.0456 -4.4948 0.0016 14 6 5.1241 -5.6392 -0.0007 15 6 5.4839 -6.5642 1.1662 16 6 6.9624 -6.9476 1.0708 17 6 7.8254 -5.6875 1.1697 18 1 7.6213 -5.1798 2.1124 19 6 9.3041 -6.0751 1.1072 20 7 10.1327 -4.8805 1.3179 21 6 11.5621 -5.2150 1.2639 22 6 12.3911 -3.9487 1.4877 23 1 12.1209 -3.1834 0.7601 24 6 13.9033 -4.2693 1.4051 25 6 14.4812 -3.4086 2.5572 26 8 13.4690 -3.4958 3.5832 27 6 12.1945 -3.4220 2.9225 28 6 7.4920 -4.7525 0.0033 29 1 -0.4850 0.8401 -0.0004 30 1 3.6440 -3.4315 -0.8893 31 1 3.6432 -3.4318 0.8907 32 1 4.1003 -5.2841 0.1168 33 1 5.2172 -6.1814 -0.9417 34 1 5.3019 -6.0483 2.1089 35 1 4.8705 -7.4641 1.1196 36 1 7.2152 -7.6255 1.8861 37 1 7.1488 -7.4414 0.1172 38 1 9.5205 -6.8089 1.8835 39 1 9.5264 -6.5037 0.1299 40 1 9.8997 -4.4279 2.1890 41 1 11.7945 -5.9431 2.0411 42 1 11.7998 -5.6375 0.2876 43 1 14.0864 -5.3293 1.5819 44 1 14.3147 -3.9599 0.4443 45 1 14.6137 -2.3756 2.2354 46 1 15.4248 -3.8226 2.9129 47 1 11.8511 -2.3879 2.8939 48 1 11.4681 -4.0415 3.4485 49 1 7.7803 -5.2238 -0.9364 50 1 8.0306 -3.8125 0.1232 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661761809.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:23:48 Heat of formation + Delta-G solvation = -94.073236 kcal Electronic energy + Delta-G solvation = -27569.576006 eV Core-core repulsion = 23722.142724 eV Total energy + Delta-G solvation = -3847.433282 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.176 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.12799 -39.83909 -37.80433 -36.28666 -33.74511 -32.43466 -32.37586 -31.32928 -29.79642 -29.03661 -26.20159 -25.64847 -25.03011 -24.44953 -22.74582 -21.91578 -21.00171 -20.40942 -19.06894 -17.64794 -17.28729 -16.77211 -16.53981 -16.07302 -15.53765 -15.33643 -15.17222 -15.13393 -14.95845 -14.78160 -14.19009 -13.95079 -13.73499 -13.37341 -13.30332 -13.24322 -13.06716 -12.95580 -12.75256 -12.44200 -12.18220 -11.96298 -11.94283 -11.57283 -11.30028 -11.26541 -11.23224 -11.14506 -11.03464 -10.98763 -10.80640 -10.61612 -10.52452 -10.03679 -9.83696 -9.38392 -8.98634 -8.78984 -8.49811 -8.45926 -6.89428 -6.27368 -3.98648 2.76428 3.00536 3.25052 3.34945 3.52510 3.55313 3.62305 3.63800 4.14654 4.34811 4.37628 4.45665 4.48886 4.56838 4.61312 4.75501 4.77491 4.80642 4.88193 4.92227 5.03596 5.11742 5.16328 5.17931 5.23354 5.25308 5.29469 5.34884 5.35775 5.40738 5.42400 5.47100 5.50735 5.55636 5.66508 5.71809 5.75637 5.76455 5.84952 5.88457 6.02096 6.12287 6.16992 6.45625 6.62755 6.67127 6.98957 7.55779 7.95691 8.42913 8.52187 9.19016 10.81807 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.012308 B = 0.002287 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2274.344360 B =12237.994966 C =14094.524435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.095 3.905 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.235 1.235 7 C -0.520 4.520 8 H 0.088 0.912 9 S -0.143 6.143 10 C -0.121 4.121 11 C 0.533 3.467 12 O -0.518 6.518 13 N -0.620 5.620 14 C 0.105 3.895 15 C -0.134 4.134 16 C -0.113 4.113 17 C -0.101 4.101 18 H 0.074 0.926 19 C 0.068 3.932 20 N -0.690 5.690 21 C 0.070 3.930 22 C -0.123 4.123 23 H 0.096 0.904 24 C -0.150 4.150 25 C 0.045 3.955 26 O -0.381 6.381 27 C 0.049 3.951 28 C 0.128 3.872 29 H 0.270 0.730 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.089 0.911 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.032 0.968 39 H 0.074 0.926 40 H 0.342 0.658 41 H 0.032 0.968 42 H 0.076 0.924 43 H 0.077 0.923 44 H 0.082 0.918 45 H 0.061 0.939 46 H 0.092 0.908 47 H 0.064 0.936 48 H 0.079 0.921 49 H 0.059 0.941 50 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.631 -17.342 2.840 30.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.114 4.114 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.159 1.159 7 C -0.668 4.668 8 H 0.106 0.894 9 S 0.083 5.917 10 C -0.272 4.272 11 C 0.320 3.680 12 O -0.392 6.392 13 N -0.355 5.355 14 C -0.018 4.018 15 C -0.173 4.173 16 C -0.151 4.151 17 C -0.120 4.120 18 H 0.093 0.907 19 C -0.062 4.062 20 N -0.322 5.322 21 C -0.059 4.059 22 C -0.142 4.142 23 H 0.114 0.886 24 C -0.188 4.188 25 C -0.031 4.031 26 O -0.300 6.300 27 C -0.028 4.028 28 C 0.005 3.995 29 H 0.080 0.920 30 H 0.113 0.887 31 H 0.114 0.886 32 H 0.108 0.892 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.094 0.906 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.051 0.949 39 H 0.093 0.907 40 H 0.161 0.839 41 H 0.050 0.950 42 H 0.094 0.906 43 H 0.096 0.904 44 H 0.101 0.899 45 H 0.080 0.920 46 H 0.110 0.890 47 H 0.082 0.918 48 H 0.097 0.903 49 H 0.078 0.922 50 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 25.592 -15.661 2.403 30.099 hybrid contribution -0.866 -0.902 0.563 1.371 sum 24.726 -16.563 2.965 29.908 Atomic orbital electron populations 1.69942 1.05902 1.27730 1.48166 1.24716 0.94459 0.98974 0.93210 0.86729 0.81913 0.83255 0.79929 1.19225 1.19987 1.15892 1.22314 0.88308 0.97490 1.58664 0.89441 1.84793 1.09201 1.00290 1.97393 1.23310 0.94370 1.04057 1.05438 1.20266 0.90520 0.81952 0.75217 1.90689 1.58692 1.41681 1.48176 1.48108 1.06779 1.05535 1.75118 1.21739 0.94326 0.87408 0.98349 1.21904 0.96370 0.99670 0.99327 1.21527 0.94729 0.96701 1.02109 1.21542 0.93612 0.96651 1.00229 0.90730 1.21949 0.92021 0.91077 1.01114 1.60448 1.03376 1.26636 1.41692 1.21952 0.87523 0.95249 1.01171 1.22616 0.94751 0.98840 0.97960 0.88578 1.23169 0.94570 1.01233 0.99810 1.23554 0.92453 0.99314 0.87795 1.88878 1.15147 1.94960 1.31008 1.23269 0.86440 1.01068 0.91993 1.21465 0.80472 1.00943 0.96608 0.91976 0.88673 0.88647 0.89246 0.91485 0.91276 0.90600 0.91856 0.91651 0.94946 0.90711 0.83878 0.94994 0.90583 0.90437 0.89915 0.92040 0.89023 0.91758 0.90276 0.92236 0.87934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.65 13.97 55.49 0.78 -25.88 16 2 C 0.09 2.79 5.50 -17.43 -0.10 2.70 16 3 Si 0.86 21.96 27.74 -169.99 -4.72 17.24 16 4 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.23 -6.02 6.74 56.52 0.38 -5.64 16 7 C -0.52 -15.06 10.04 30.94 0.31 -14.75 16 8 H 0.09 2.63 8.03 -52.49 -0.42 2.21 16 9 S -0.14 -3.68 18.55 -107.50 -1.99 -5.67 16 10 C -0.12 -2.40 4.50 36.00 0.16 -2.24 16 11 C 0.53 9.86 7.72 -10.99 -0.08 9.78 16 12 O -0.52 -11.46 15.28 5.55 0.08 -11.37 16 13 N -0.62 -8.56 2.97 -172.79 -0.51 -9.07 16 14 C 0.11 1.11 6.34 -3.71 -0.02 1.09 16 15 C -0.13 -1.14 6.08 -26.61 -0.16 -1.30 16 16 C -0.11 -0.85 5.17 -26.69 -0.14 -0.99 16 17 C -0.10 -0.90 2.48 -90.52 -0.22 -1.12 16 18 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 19 C 0.07 0.51 5.08 -3.83 -0.02 0.49 16 20 N -0.69 -5.59 6.07 -113.78 -0.69 -6.28 16 21 C 0.07 0.48 4.89 -3.83 -0.02 0.46 16 22 C -0.12 -0.86 3.30 -89.09 -0.29 -1.16 16 23 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 24 C -0.15 -0.86 6.71 -24.73 -0.17 -1.03 16 25 C 0.05 0.31 7.72 38.21 0.29 0.60 16 26 O -0.38 -3.75 11.52 -35.23 -0.41 -4.16 16 27 C 0.05 0.41 6.93 37.73 0.26 0.67 16 28 C 0.13 1.52 5.53 -3.73 -0.02 1.50 16 29 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 30 H 0.10 1.76 7.94 -51.91 -0.41 1.35 16 31 H 0.10 1.77 7.69 -51.91 -0.40 1.37 16 32 H 0.09 0.99 5.93 -51.93 -0.31 0.68 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.03 0.22 8.14 -51.93 -0.42 -0.20 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.34 2.81 7.37 -39.29 -0.29 2.52 16 41 H 0.03 0.22 8.14 -51.93 -0.42 -0.20 16 42 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.08 0.42 7.87 -51.93 -0.41 0.01 16 44 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 48 H 0.08 0.62 6.82 -51.93 -0.35 0.27 16 49 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 50 H 0.10 1.49 6.78 -51.93 -0.35 1.14 16 LS Contribution 402.05 15.07 6.06 6.06 Total: -1.00 -34.13 402.05 -10.48 -44.61 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -8.87 Total: -0.19 kcal Atomic # 6 Polarization: -5.08 SS G_CDS: -0.22 Total: -5.30 kcal Atomic # 7 Polarization: -40.80 SS G_CDS: -0.43 Total: -41.22 kcal Atomic # 8 Polarization: -15.21 SS G_CDS: -0.32 Total: -15.53 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.72 Total: 17.24 kcal Atomic # 16 Polarization: -3.68 SS G_CDS: -1.99 Total: -5.67 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.13 -10.48 -44.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661761809.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.458 kcal (2) G-P(sol) polarization free energy of solvation -34.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds