Wall clock time and date at job start Wed Apr 1 2020 02:24:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86796 * 120.00384 * 2 1 4 4 H 1.48504 * 109.47262 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47073 * 300.00007 * 3 2 1 6 6 H 1.48494 * 109.47035 * 59.99975 * 3 2 1 7 7 C 1.38808 * 119.99526 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99719 * 180.02562 * 7 2 1 9 9 S 1.76197 * 120.00281 * 0.02562 * 7 2 1 10 10 C 1.80997 * 100.00199 * 179.97438 * 9 7 2 11 11 C 1.50695 * 109.47236 * 179.97438 * 10 9 7 12 12 O 1.21282 * 119.99860 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00327 * 179.97438 * 11 10 9 14 14 C 1.46925 * 120.62685 * 0.03098 * 13 11 10 15 15 C 1.53191 * 108.78068 * 126.36625 * 14 13 11 16 16 C 1.53042 * 109.31302 * 54.63193 * 15 14 13 17 17 C 1.53050 * 109.53487 * 298.63946 * 16 15 14 18 18 H 1.08998 * 109.52355 * 301.39262 * 17 16 15 19 19 C 1.53007 * 109.49364 * 181.31615 * 17 16 15 20 20 N 1.46903 * 109.46928 * 175.15968 * 19 17 16 21 21 C 1.46897 * 110.99979 * 179.97438 * 20 19 17 22 22 C 1.53003 * 109.47048 * 180.02562 * 21 20 19 23 23 H 1.09000 * 110.74864 * 302.98222 * 22 21 20 24 24 C 1.55566 * 111.01264 * 179.40925 * 22 21 20 25 25 C 1.54944 * 100.82489 * 207.60464 * 24 22 21 26 26 O 1.43645 * 105.22260 * 36.43849 * 25 24 22 27 27 C 1.43235 * 109.97529 * 335.52671 * 26 25 24 28 28 C 1.46918 * 120.63344 * 180.02562 * 13 11 10 29 29 H 0.96997 * 119.99691 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.46938 * 59.99925 * 10 9 7 31 31 H 1.08999 * 109.47038 * 299.99816 * 10 9 7 32 32 H 1.09006 * 109.58384 * 246.15261 * 14 13 11 33 33 H 1.09000 * 109.59092 * 6.57863 * 14 13 11 34 34 H 1.08997 * 109.50099 * 174.58315 * 15 14 13 35 35 H 1.09002 * 109.49354 * 294.68472 * 15 14 13 36 36 H 1.08995 * 109.46359 * 178.61982 * 16 15 14 37 37 H 1.08998 * 109.45877 * 58.65369 * 16 15 14 38 38 H 1.08997 * 109.47195 * 55.16144 * 19 17 16 39 39 H 1.08998 * 109.46907 * 295.15754 * 19 17 16 40 40 H 1.00897 * 110.99776 * 303.95787 * 20 19 17 41 41 H 1.08994 * 109.47177 * 59.99935 * 21 20 19 42 42 H 1.09005 * 109.47021 * 299.99891 * 21 20 19 43 43 H 1.08997 * 111.22347 * 89.69902 * 24 22 21 44 44 H 1.09003 * 111.13190 * 325.46499 * 24 22 21 45 45 H 1.09002 * 110.30953 * 277.47426 * 25 24 22 46 46 H 1.09000 * 110.30834 * 155.40499 * 25 24 22 47 47 H 1.08995 * 109.83514 * 121.22466 * 27 26 25 48 48 H 1.09003 * 109.82666 * 242.20160 * 27 26 25 49 49 H 1.08999 * 109.58677 * 113.84955 * 28 13 11 50 50 H 1.09005 * 109.59055 * 353.42202 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 3.7104 1.3462 -0.0006 5 1 1.8917 2.3963 -1.2125 6 1 1.8917 2.3963 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 16 1.1292 -2.7281 0.0005 10 6 2.5157 -3.8916 0.0005 11 6 1.9871 -5.3028 0.0012 12 8 0.7908 -5.5023 0.0011 13 7 2.8438 -6.3433 0.0008 14 6 4.2956 -6.1175 0.0004 15 6 4.9154 -6.8917 1.1680 16 6 4.5082 -8.3638 1.0721 17 6 2.9853 -8.4809 1.1690 18 1 2.6461 -8.0508 2.1113 19 6 2.5815 -9.9554 1.1060 20 7 1.1324 -10.0756 1.3150 21 6 0.7074 -11.4807 1.2605 22 6 -0.8043 -11.5652 1.4813 23 1 -1.0823 -11.1056 2.4297 24 6 -1.2960 -13.0397 1.4158 25 6 -2.7567 -12.8384 0.9396 26 8 -2.7057 -11.7338 0.0227 27 6 -1.5681 -10.9120 0.3094 28 6 2.3437 -7.7247 0.0008 29 1 -0.4849 0.8400 0.0004 30 1 3.1243 -3.7315 0.8905 31 1 3.1243 -3.7316 -0.8895 32 1 4.7202 -6.4715 -0.9391 33 1 4.5000 -5.0534 0.1181 34 1 6.0014 -6.8110 1.1224 35 1 4.5584 -6.4761 2.1103 36 1 4.9679 -8.9217 1.8879 37 1 4.8438 -8.7721 0.1188 38 1 3.1078 -10.5097 1.8830 39 1 2.8427 -10.3622 0.1291 40 1 0.8559 -9.6473 2.1858 41 1 1.2207 -12.0460 2.0382 42 1 0.9555 -11.8977 0.2844 43 1 -1.2643 -13.5102 2.3984 44 1 -0.7213 -13.6136 0.6888 45 1 -3.4007 -12.5984 1.7856 46 1 -3.1163 -13.7341 0.4333 47 1 -0.9225 -10.8554 -0.5670 48 1 -1.8964 -9.9122 0.5935 49 1 2.6094 -8.2095 -0.9386 50 1 1.2600 -7.7211 0.1188 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661761810.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:24:00 Heat of formation + Delta-G solvation = -94.587383 kcal Electronic energy + Delta-G solvation = -27572.126865 eV Core-core repulsion = 23724.671288 eV Total energy + Delta-G solvation = -3847.455577 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.176 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.00919 -39.67602 -37.72421 -36.23680 -33.67529 -32.41163 -32.31415 -31.25005 -29.71459 -28.96018 -26.12353 -25.54945 -24.90090 -24.15963 -22.58457 -21.91444 -21.16092 -20.36251 -18.96964 -17.62570 -17.09462 -16.67705 -16.36452 -16.04934 -15.43166 -15.21424 -15.07034 -14.87830 -14.78546 -14.68910 -14.30565 -13.91645 -13.86926 -13.46413 -13.34017 -13.15944 -12.88302 -12.63422 -12.57928 -12.41851 -12.10433 -11.83607 -11.82119 -11.50138 -11.28514 -11.19628 -11.13586 -11.05992 -10.99463 -10.97218 -10.77192 -10.73019 -10.54273 -9.76467 -9.70285 -9.25362 -9.05251 -8.74902 -8.40566 -8.17977 -6.46746 -6.19373 -3.89398 3.01115 3.14126 3.22809 3.28323 3.32804 3.59266 3.65531 3.71444 4.16457 4.22367 4.39484 4.52806 4.57133 4.65755 4.68370 4.83558 4.86971 4.90509 4.99004 5.06299 5.08521 5.15657 5.20222 5.27047 5.28814 5.37205 5.38807 5.39988 5.43561 5.47573 5.51003 5.57820 5.63312 5.70461 5.76621 5.82078 5.84348 5.91355 5.92216 5.94027 6.15574 6.18270 6.22980 6.62845 6.75762 6.81236 7.02520 7.61804 7.66922 8.37639 8.66084 9.25898 10.88097 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.013353 B = 0.002208 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.427821 B =12680.353616 C =14515.508261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.918 3.082 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.534 4.534 8 H 0.072 0.928 9 S -0.062 6.062 10 C -0.150 4.150 11 C 0.534 3.466 12 O -0.515 6.515 13 N -0.622 5.622 14 C 0.107 3.893 15 C -0.134 4.134 16 C -0.112 4.112 17 C -0.100 4.100 18 H 0.074 0.926 19 C 0.069 3.931 20 N -0.689 5.689 21 C 0.072 3.928 22 C -0.121 4.121 23 H 0.084 0.916 24 C -0.151 4.151 25 C 0.051 3.949 26 O -0.389 6.389 27 C 0.064 3.936 28 C 0.127 3.873 29 H 0.268 0.732 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.065 0.935 33 H 0.088 0.912 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.031 0.969 39 H 0.074 0.926 40 H 0.344 0.656 41 H 0.032 0.968 42 H 0.075 0.925 43 H 0.081 0.919 44 H 0.079 0.921 45 H 0.059 0.941 46 H 0.082 0.918 47 H 0.076 0.924 48 H 0.073 0.927 49 H 0.058 0.942 50 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.855 -27.255 4.367 28.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.137 4.137 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.682 4.682 8 H 0.091 0.909 9 S 0.165 5.835 10 C -0.301 4.301 11 C 0.322 3.678 12 O -0.389 6.389 13 N -0.358 5.358 14 C -0.017 4.017 15 C -0.173 4.173 16 C -0.150 4.150 17 C -0.120 4.120 18 H 0.093 0.907 19 C -0.061 4.061 20 N -0.320 5.320 21 C -0.057 4.057 22 C -0.140 4.140 23 H 0.102 0.898 24 C -0.190 4.190 25 C -0.025 4.025 26 O -0.308 6.308 27 C -0.012 4.012 28 C 0.005 3.995 29 H 0.077 0.923 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.083 0.917 33 H 0.107 0.893 34 H 0.093 0.907 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.050 0.950 39 H 0.092 0.908 40 H 0.163 0.837 41 H 0.050 0.950 42 H 0.094 0.906 43 H 0.100 0.900 44 H 0.098 0.902 45 H 0.077 0.923 46 H 0.101 0.899 47 H 0.094 0.906 48 H 0.092 0.908 49 H 0.077 0.923 50 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 5.604 -27.263 3.529 28.056 hybrid contribution 2.653 0.904 1.131 3.022 sum 8.256 -26.359 4.660 28.012 Atomic orbital electron populations 1.70033 1.05933 1.27297 1.46982 1.24998 0.95026 0.99014 0.94615 0.86122 0.79573 0.81946 0.77885 1.19639 1.20580 1.20592 1.22904 0.94900 0.91682 1.58734 0.90945 1.85416 1.05086 0.96309 1.96668 1.23550 1.06357 0.95628 1.04539 1.20297 0.86265 0.86152 0.75113 1.90695 1.15121 1.85209 1.47872 1.48133 1.06173 1.06048 1.75412 1.21703 0.80394 1.01444 0.98154 1.21908 1.00508 0.95459 0.99400 1.21525 0.94893 0.96597 1.02018 1.21557 0.95467 0.94687 1.00297 0.90737 1.21944 0.87375 0.95727 1.01031 1.60407 1.14319 1.15406 1.41844 1.21882 0.93394 0.89282 1.01170 1.22795 0.95580 0.95564 1.00093 0.89753 1.23334 0.96688 0.96432 1.02510 1.23320 0.95941 0.90105 0.93183 1.88426 1.47568 1.39073 1.55750 1.23126 0.86595 0.94265 0.97225 1.21465 1.01316 0.80291 0.96447 0.92261 0.89435 0.89401 0.91663 0.89332 0.90749 0.91334 0.91959 0.91695 0.95049 0.90767 0.83748 0.94988 0.90612 0.90014 0.90241 0.92307 0.89933 0.90628 0.90832 0.92342 0.87889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.37 13.22 55.49 0.73 -25.64 16 2 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.53 29.55 -169.99 -5.02 16.51 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.53 -15.32 9.50 30.94 0.29 -15.03 16 8 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 9 S -0.06 -1.70 20.57 -107.50 -2.21 -3.91 16 10 C -0.15 -3.11 4.50 36.00 0.16 -2.95 16 11 C 0.53 10.42 7.72 -10.99 -0.08 10.33 16 12 O -0.51 -12.05 15.27 5.56 0.08 -11.96 16 13 N -0.62 -9.01 2.97 -172.75 -0.51 -9.53 16 14 C 0.11 1.18 6.34 -3.71 -0.02 1.15 16 15 C -0.13 -1.18 6.08 -26.61 -0.16 -1.34 16 16 C -0.11 -0.87 5.17 -26.68 -0.14 -1.01 16 17 C -0.10 -0.92 2.48 -90.47 -0.22 -1.15 16 18 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 19 C 0.07 0.52 5.08 -3.82 -0.02 0.50 16 20 N -0.69 -5.58 5.88 -113.78 -0.67 -6.25 16 21 C 0.07 0.49 5.03 -3.82 -0.02 0.47 16 22 C -0.12 -0.89 3.18 -88.53 -0.28 -1.17 16 23 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 24 C -0.15 -0.92 6.64 -24.34 -0.16 -1.08 16 25 C 0.05 0.40 7.77 38.18 0.30 0.69 16 26 O -0.39 -4.48 11.36 -35.23 -0.40 -4.88 16 27 C 0.06 0.65 7.23 37.88 0.27 0.92 16 28 C 0.13 1.59 5.54 -3.69 -0.02 1.57 16 29 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 30 H 0.09 1.68 7.69 -51.92 -0.40 1.28 16 31 H 0.09 1.70 7.94 -51.92 -0.41 1.28 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.09 1.02 5.93 -51.93 -0.31 0.71 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.03 0.21 8.14 -51.93 -0.42 -0.21 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.34 2.79 8.73 -39.29 -0.34 2.45 16 41 H 0.03 0.19 8.14 -51.93 -0.42 -0.23 16 42 H 0.08 0.53 8.07 -51.93 -0.42 0.11 16 43 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 44 H 0.08 0.45 8.05 -51.93 -0.42 0.03 16 45 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.08 0.79 7.76 -51.93 -0.40 0.39 16 48 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 49 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 50 H 0.10 1.57 6.79 -51.93 -0.35 1.22 16 LS Contribution 407.11 15.07 6.14 6.14 Total: -1.00 -34.69 407.11 -11.01 -45.71 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -8.94 Total: -0.10 kcal Atomic # 6 Polarization: -5.89 SS G_CDS: -0.20 Total: -6.10 kcal Atomic # 7 Polarization: -40.96 SS G_CDS: -0.45 Total: -41.41 kcal Atomic # 8 Polarization: -16.52 SS G_CDS: -0.32 Total: -16.84 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -34.69 -11.01 -45.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661761810.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.882 kcal (2) G-P(sol) polarization free energy of solvation -34.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds