Wall clock time and date at job start Wed Apr 1 2020 02:23:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86796 * 120.00384 * 2 1 4 4 H 1.48504 * 109.47262 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47073 * 300.00007 * 3 2 1 6 6 H 1.48494 * 109.47035 * 59.99975 * 3 2 1 7 7 C 1.38808 * 119.99526 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99719 * 180.02562 * 7 2 1 9 9 S 1.76197 * 120.00281 * 0.02562 * 7 2 1 10 10 C 1.80997 * 100.00199 * 179.97438 * 9 7 2 11 11 C 1.50695 * 109.47236 * 179.97438 * 10 9 7 12 12 O 1.21282 * 119.99860 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00327 * 179.97438 * 11 10 9 14 14 C 1.46925 * 120.62685 * 0.03098 * 13 11 10 15 15 C 1.53191 * 108.78068 * 126.36625 * 14 13 11 16 16 C 1.53042 * 109.31302 * 54.63193 * 15 14 13 17 17 C 1.53050 * 109.53487 * 298.63946 * 16 15 14 18 18 H 1.08998 * 109.52355 * 301.39262 * 17 16 15 19 19 C 1.53007 * 109.49364 * 181.31615 * 17 16 15 20 20 N 1.46903 * 109.46928 * 175.15968 * 19 17 16 21 21 C 1.46897 * 110.99979 * 179.97438 * 20 19 17 22 22 C 1.53003 * 109.47048 * 180.02562 * 21 20 19 23 23 H 1.09000 * 110.74864 * 302.98222 * 22 21 20 24 24 C 1.55566 * 111.01264 * 179.40925 * 22 21 20 25 25 C 1.54944 * 100.82489 * 207.60464 * 24 22 21 26 26 O 1.43645 * 105.22260 * 36.43849 * 25 24 22 27 27 C 1.43235 * 109.97529 * 335.52671 * 26 25 24 28 28 C 1.46918 * 120.63344 * 180.02562 * 13 11 10 29 29 H 0.96997 * 119.99691 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.46938 * 59.99925 * 10 9 7 31 31 H 1.08999 * 109.47038 * 299.99816 * 10 9 7 32 32 H 1.09006 * 109.58384 * 246.15261 * 14 13 11 33 33 H 1.09000 * 109.59092 * 6.57863 * 14 13 11 34 34 H 1.08997 * 109.50099 * 174.58315 * 15 14 13 35 35 H 1.09002 * 109.49354 * 294.68472 * 15 14 13 36 36 H 1.08995 * 109.46359 * 178.61982 * 16 15 14 37 37 H 1.08998 * 109.45877 * 58.65369 * 16 15 14 38 38 H 1.08997 * 109.47195 * 55.16144 * 19 17 16 39 39 H 1.08998 * 109.46907 * 295.15754 * 19 17 16 40 40 H 1.00897 * 110.99776 * 303.95787 * 20 19 17 41 41 H 1.08994 * 109.47177 * 59.99935 * 21 20 19 42 42 H 1.09005 * 109.47021 * 299.99891 * 21 20 19 43 43 H 1.08997 * 111.22347 * 89.69902 * 24 22 21 44 44 H 1.09003 * 111.13190 * 325.46499 * 24 22 21 45 45 H 1.09002 * 110.30953 * 277.47426 * 25 24 22 46 46 H 1.09000 * 110.30834 * 155.40499 * 25 24 22 47 47 H 1.08995 * 109.83514 * 121.22466 * 27 26 25 48 48 H 1.09003 * 109.82666 * 242.20160 * 27 26 25 49 49 H 1.08999 * 109.58677 * 113.84955 * 28 13 11 50 50 H 1.09005 * 109.59055 * 353.42202 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 3.7104 1.3462 -0.0006 5 1 1.8917 2.3963 -1.2125 6 1 1.8917 2.3963 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 16 1.1292 -2.7281 0.0005 10 6 2.5157 -3.8916 0.0005 11 6 1.9871 -5.3028 0.0012 12 8 0.7908 -5.5023 0.0011 13 7 2.8438 -6.3433 0.0008 14 6 4.2956 -6.1175 0.0004 15 6 4.9154 -6.8917 1.1680 16 6 4.5082 -8.3638 1.0721 17 6 2.9853 -8.4809 1.1690 18 1 2.6461 -8.0508 2.1113 19 6 2.5815 -9.9554 1.1060 20 7 1.1324 -10.0756 1.3150 21 6 0.7074 -11.4807 1.2605 22 6 -0.8043 -11.5652 1.4813 23 1 -1.0823 -11.1056 2.4297 24 6 -1.2960 -13.0397 1.4158 25 6 -2.7567 -12.8384 0.9396 26 8 -2.7057 -11.7338 0.0227 27 6 -1.5681 -10.9120 0.3094 28 6 2.3437 -7.7247 0.0008 29 1 -0.4849 0.8400 0.0004 30 1 3.1243 -3.7315 0.8905 31 1 3.1243 -3.7316 -0.8895 32 1 4.7202 -6.4715 -0.9391 33 1 4.5000 -5.0534 0.1181 34 1 6.0014 -6.8110 1.1224 35 1 4.5584 -6.4761 2.1103 36 1 4.9679 -8.9217 1.8879 37 1 4.8438 -8.7721 0.1188 38 1 3.1078 -10.5097 1.8830 39 1 2.8427 -10.3622 0.1291 40 1 0.8559 -9.6473 2.1858 41 1 1.2207 -12.0460 2.0382 42 1 0.9555 -11.8977 0.2844 43 1 -1.2643 -13.5102 2.3984 44 1 -0.7213 -13.6136 0.6888 45 1 -3.4007 -12.5984 1.7856 46 1 -3.1163 -13.7341 0.4333 47 1 -0.9225 -10.8554 -0.5670 48 1 -1.8964 -9.9122 0.5935 49 1 2.6094 -8.2095 -0.9386 50 1 1.2600 -7.7211 0.1188 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001661761810.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:23:57 Heat of formation + Delta-G solvation = -118.613604 kcal Electronic energy + Delta-G solvation = -27573.168720 eV Core-core repulsion = 23724.671288 eV Total energy + Delta-G solvation = -3848.497433 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.176 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.18124 -40.42365 -38.82958 -37.06842 -34.61936 -34.57476 -33.17211 -32.11386 -30.84779 -29.97773 -27.71632 -26.84202 -26.05419 -24.87969 -23.22924 -22.64222 -21.91400 -21.20311 -20.32128 -19.43868 -18.12011 -17.75627 -17.20028 -16.97224 -16.88383 -16.60547 -16.24800 -15.90387 -15.86781 -15.59047 -15.39828 -14.98115 -14.89363 -14.50421 -14.38934 -14.19247 -14.02735 -13.92689 -13.41050 -13.28847 -13.20117 -13.13584 -12.91720 -12.80514 -12.59209 -12.44894 -12.13188 -12.04807 -11.88280 -11.77183 -11.69785 -11.68874 -11.55288 -11.29867 -11.16275 -10.80377 -10.49861 -10.25607 -9.62244 -9.30039 -8.68004 -8.34930 -6.13515 1.26015 1.41272 1.46219 1.57557 1.60561 2.15312 2.27217 2.95383 2.99048 3.10308 3.26241 3.57258 3.69609 3.79412 3.83606 3.89093 3.96319 4.07075 4.12394 4.24351 4.27716 4.28951 4.35503 4.42293 4.42913 4.46979 4.63484 4.64709 4.68523 4.74608 4.76639 4.78444 4.82924 4.93422 4.95811 4.97172 4.99578 5.03401 5.13793 5.16508 5.26957 5.29737 5.41378 5.47784 5.64163 6.03991 6.13164 6.19657 6.35119 6.41072 7.05997 7.19020 8.74685 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.013353 B = 0.002208 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.427821 B =12680.353616 C =14515.508261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.011 3.989 3 Si 1.001 2.999 4 H -0.255 1.255 5 H -0.274 1.274 6 H -0.273 1.273 7 C -0.544 4.544 8 H 0.083 0.917 9 S -0.155 6.155 10 C -0.121 4.121 11 C 0.529 3.471 12 O -0.567 6.567 13 N -0.608 5.608 14 C 0.096 3.904 15 C -0.130 4.130 16 C -0.107 4.107 17 C -0.091 4.091 18 H 0.057 0.943 19 C 0.076 3.924 20 N -0.708 5.708 21 C 0.079 3.921 22 C -0.116 4.116 23 H 0.084 0.916 24 C -0.140 4.140 25 C 0.040 3.960 26 O -0.420 6.420 27 C 0.062 3.938 28 C 0.126 3.874 29 H 0.271 0.729 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.102 0.898 35 H 0.054 0.946 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.050 0.950 39 H 0.080 0.920 40 H 0.342 0.658 41 H 0.050 0.950 42 H 0.076 0.924 43 H 0.104 0.896 44 H 0.087 0.913 45 H 0.062 0.938 46 H 0.096 0.904 47 H 0.067 0.933 48 H 0.050 0.950 49 H 0.072 0.928 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.566 -28.855 4.974 31.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.193 4.193 3 Si 0.822 3.178 4 H -0.179 1.179 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.692 4.692 8 H 0.101 0.899 9 S 0.072 5.928 10 C -0.273 4.273 11 C 0.317 3.683 12 O -0.446 6.446 13 N -0.342 5.342 14 C -0.026 4.026 15 C -0.168 4.168 16 C -0.145 4.145 17 C -0.110 4.110 18 H 0.076 0.924 19 C -0.053 4.053 20 N -0.339 5.339 21 C -0.050 4.050 22 C -0.135 4.135 23 H 0.102 0.898 24 C -0.178 4.178 25 C -0.036 4.036 26 O -0.340 6.340 27 C -0.014 4.014 28 C 0.004 3.996 29 H 0.080 0.920 30 H 0.123 0.877 31 H 0.123 0.877 32 H 0.107 0.893 33 H 0.102 0.898 34 H 0.120 0.880 35 H 0.073 0.927 36 H 0.101 0.899 37 H 0.098 0.902 38 H 0.068 0.932 39 H 0.098 0.902 40 H 0.160 0.840 41 H 0.068 0.932 42 H 0.094 0.906 43 H 0.122 0.878 44 H 0.106 0.894 45 H 0.081 0.919 46 H 0.114 0.886 47 H 0.085 0.915 48 H 0.068 0.932 49 H 0.090 0.910 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 9.374 -28.915 4.141 30.677 hybrid contribution 1.506 1.273 0.915 2.174 sum 10.880 -27.641 5.056 30.133 Atomic orbital electron populations 1.70202 1.08026 1.28549 1.48061 1.26170 0.95997 1.03407 0.93748 0.84879 0.78635 0.76178 0.78087 1.17885 1.19934 1.19882 1.23221 0.95306 0.91859 1.58775 0.89897 1.85626 1.10757 0.99365 1.97003 1.23354 1.03249 0.94557 1.06096 1.20139 0.86077 0.86719 0.75384 1.90678 1.17293 1.85796 1.50806 1.48172 1.07366 1.05685 1.72962 1.22072 0.77933 1.01992 1.00633 1.21901 1.01889 0.95616 0.97359 1.21527 0.93149 0.96132 1.03693 1.21475 0.96691 0.95255 0.97613 0.92404 1.21893 0.87071 0.94384 1.01976 1.60410 1.15060 1.16447 1.41979 1.21833 0.92755 0.88667 1.01725 1.22754 0.95826 0.96276 0.98602 0.89758 1.23310 0.95154 0.95466 1.03866 1.23579 0.97517 0.89485 0.93027 1.88388 1.48170 1.40338 1.57104 1.23073 0.86599 0.93576 0.98140 1.21589 0.99791 0.79435 0.98786 0.91999 0.87679 0.87669 0.89306 0.89799 0.87965 0.92690 0.89889 0.90212 0.93167 0.90167 0.84020 0.93205 0.90604 0.87803 0.89439 0.91939 0.88605 0.91517 0.93164 0.90952 0.91286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.95 13.22 21.65 0.29 -56.67 16 2 C 0.01 0.65 5.49 84.86 0.47 1.12 16 3 Si 1.00 44.08 29.55 68.60 2.03 46.11 16 4 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 5 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 6 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 7 C -0.54 -31.59 9.50 67.96 0.65 -30.95 16 8 H 0.08 4.46 7.80 -2.91 -0.02 4.44 16 9 S -0.15 -8.88 20.57 -56.49 -1.16 -10.05 16 10 C -0.12 -5.08 4.50 71.23 0.32 -4.76 16 11 C 0.53 21.18 7.72 87.66 0.68 21.86 16 12 O -0.57 -28.12 15.27 -3.04 -0.05 -28.17 16 13 N -0.61 -17.27 2.97 -818.84 -2.43 -19.70 16 14 C 0.10 1.87 6.34 86.36 0.55 2.42 16 15 C -0.13 -1.84 6.08 30.67 0.19 -1.65 16 16 C -0.11 -1.26 5.17 30.63 0.16 -1.10 16 17 C -0.09 -1.51 2.48 -10.70 -0.03 -1.54 16 18 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 19 C 0.08 0.97 5.08 86.31 0.44 1.40 16 20 N -0.71 -10.99 5.88 -513.88 -3.02 -14.01 16 21 C 0.08 0.95 5.03 86.30 0.43 1.38 16 22 C -0.12 -1.63 3.18 -9.44 -0.03 -1.66 16 23 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 24 C -0.14 -1.46 6.64 32.14 0.21 -1.24 16 25 C 0.04 0.60 7.77 72.65 0.56 1.16 16 26 O -0.42 -10.08 11.36 -148.98 -1.69 -11.77 16 27 C 0.06 1.35 7.23 72.45 0.52 1.87 16 28 C 0.13 3.10 5.54 86.38 0.48 3.57 16 29 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 30 H 0.11 3.99 7.69 -2.39 -0.02 3.97 16 31 H 0.11 4.00 7.94 -2.40 -0.02 3.98 16 32 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 33 H 0.08 1.73 5.93 -2.39 -0.01 1.72 16 34 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 39 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.34 5.52 8.73 -89.70 -0.78 4.74 16 41 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 42 H 0.08 0.93 8.07 -2.38 -0.02 0.91 16 43 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 44 H 0.09 0.79 8.05 -2.39 -0.02 0.78 16 45 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 46 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 47 H 0.07 1.51 7.76 -2.39 -0.02 1.49 16 48 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 49 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 50 H 0.07 2.22 6.79 -2.38 -0.02 2.20 16 Total: -1.00 -80.36 407.11 -0.32 -80.68 By element: Atomic # 1 Polarization: 21.55 SS G_CDS: 0.13 Total: 21.68 kcal Atomic # 6 Polarization: -13.70 SS G_CDS: 5.60 Total: -8.10 kcal Atomic # 7 Polarization: -85.21 SS G_CDS: -5.17 Total: -90.38 kcal Atomic # 8 Polarization: -38.20 SS G_CDS: -1.74 Total: -39.94 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Atomic # 16 Polarization: -8.88 SS G_CDS: -1.16 Total: -10.05 kcal Total: -80.36 -0.32 -80.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661761810.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.935 kcal (2) G-P(sol) polarization free energy of solvation -80.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds