Wall clock time and date at job start Wed Apr 1 2020 02:24:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86807 * 119.99909 * 2 1 4 4 H 1.48502 * 109.46875 * 269.99802 * 3 2 1 5 5 H 1.48500 * 109.47129 * 29.99229 * 3 2 1 6 6 H 1.48490 * 109.47158 * 149.99710 * 3 2 1 7 7 C 1.38794 * 120.00368 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99632 * 0.02562 * 7 2 1 9 9 S 1.76205 * 120.00200 * 180.02562 * 7 2 1 10 10 C 1.81001 * 99.99931 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.47141 * 180.02562 * 10 9 7 12 12 O 1.21281 * 119.99924 * 359.97438 * 11 10 9 13 13 N 1.34773 * 119.99924 * 180.02562 * 11 10 9 14 14 C 1.46926 * 120.63302 * 359.97438 * 13 11 10 15 15 C 1.53191 * 108.89109 * 233.67613 * 14 13 11 16 16 C 1.53035 * 109.31327 * 305.29292 * 15 14 13 17 17 C 1.53038 * 109.54175 * 61.36680 * 16 15 14 18 18 H 1.09002 * 109.49557 * 58.58503 * 17 16 15 19 19 C 1.53001 * 109.49833 * 178.68412 * 17 16 15 20 20 N 1.46903 * 109.46806 * 185.00221 * 19 17 16 21 21 C 1.46894 * 110.99988 * 180.02562 * 20 19 17 22 22 C 1.52998 * 109.47236 * 179.97438 * 21 20 19 23 23 H 1.08998 * 110.75454 * 57.01742 * 22 21 20 24 24 C 1.55306 * 110.84730 * 180.71589 * 22 21 20 25 25 C 1.54947 * 100.94319 * 152.32281 * 24 22 21 26 26 O 1.43641 * 105.13542 * 323.55472 * 25 24 22 27 27 C 1.43232 * 109.97450 * 24.42374 * 26 25 24 28 28 C 1.47207 * 120.81153 * 180.13388 * 13 11 10 29 29 H 0.96999 * 120.00104 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.47030 * 59.99687 * 10 9 7 31 31 H 1.09003 * 109.46809 * 300.00106 * 10 9 7 32 32 H 1.09002 * 109.58861 * 113.81616 * 14 13 11 33 33 H 1.08996 * 109.58519 * 353.53507 * 14 13 11 34 34 H 1.09003 * 109.49975 * 65.24379 * 15 14 13 35 35 H 1.09004 * 109.49655 * 185.34207 * 15 14 13 36 36 H 1.09003 * 109.46332 * 181.39145 * 16 15 14 37 37 H 1.09004 * 109.45942 * 301.34050 * 16 15 14 38 38 H 1.08998 * 109.46829 * 304.99842 * 19 17 16 39 39 H 1.08995 * 109.46906 * 65.00163 * 19 17 16 40 40 H 1.00902 * 110.99979 * 303.95132 * 20 19 17 41 41 H 1.08997 * 109.47131 * 299.99636 * 21 20 19 42 42 H 1.09008 * 109.47185 * 59.99396 * 21 20 19 43 43 H 1.09001 * 111.12198 * 270.23735 * 24 22 21 44 44 H 1.08998 * 111.12932 * 34.40396 * 24 22 21 45 45 H 1.09001 * 110.31065 * 204.63319 * 25 24 22 46 46 H 1.09006 * 110.30996 * 82.47007 * 25 24 22 47 47 H 1.08998 * 109.83531 * 238.77788 * 27 26 25 48 48 H 1.09004 * 109.83438 * 117.80283 * 27 26 25 49 49 H 1.08996 * 109.53610 * 6.53712 * 28 13 11 50 50 H 1.09002 * 109.68003 * 246.23180 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6528 0.6999 6 1 3.5478 1.4403 0.7000 7 6 2.0104 -1.2019 0.0005 8 1 1.4704 -2.1372 0.0005 9 16 3.7724 -1.2019 0.0012 10 6 4.0867 -2.9844 0.0009 11 6 5.5732 -3.2324 0.0021 12 8 6.3442 -2.2961 0.0025 13 7 6.0458 -4.4945 0.0016 14 6 5.1244 -5.6389 0.0005 15 6 5.4816 -6.5644 1.1679 16 6 6.9593 -6.9509 1.0736 17 6 7.8248 -5.6927 1.1725 18 1 7.6212 -5.1843 2.1150 19 6 9.3028 -6.0834 1.1111 20 7 10.1338 -4.8912 1.3259 21 6 11.5624 -5.2287 1.2730 22 6 12.3939 -3.9646 1.4999 23 1 12.1341 -3.4967 2.4495 24 6 13.9126 -4.2825 1.4325 25 6 14.4778 -2.9191 0.9608 26 8 13.4981 -2.4032 0.0458 27 6 12.2148 -2.9720 0.3311 28 6 7.4942 -4.7573 0.0057 29 1 -0.4850 0.8400 -0.0004 30 1 3.6441 -3.4312 -0.8893 31 1 3.6434 -3.4316 0.8907 32 1 5.2187 -6.1831 -0.9393 33 1 4.1005 -5.2837 0.1158 34 1 5.3001 -6.0478 2.1104 35 1 4.8667 -7.4632 1.1208 36 1 7.2100 -7.6292 1.8891 37 1 7.1451 -7.4455 0.1202 38 1 9.5164 -6.8196 1.8860 39 1 9.5254 -6.5101 0.1331 40 1 9.9084 -4.1684 0.6589 41 1 11.7921 -5.9592 2.0487 42 1 11.8005 -5.6493 0.2960 43 1 14.3018 -4.5504 2.4148 44 1 14.1180 -5.0663 0.7035 45 1 15.4322 -3.0603 0.4534 46 1 14.5956 -2.2445 1.8089 47 1 11.8401 -3.4983 -0.5468 48 1 11.5170 -2.1852 0.6178 49 1 8.0347 -3.8184 0.1257 50 1 7.7845 -5.2284 -0.9335 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661761811.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:24:11 Heat of formation + Delta-G solvation = -94.689191 kcal Electronic energy + Delta-G solvation = -27654.671005 eV Core-core repulsion = 23807.211013 eV Total energy + Delta-G solvation = -3847.459992 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.176 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.18028 -39.81725 -37.86750 -36.31940 -33.78844 -32.46229 -32.41171 -31.32299 -29.84057 -29.08426 -26.21208 -25.67683 -25.15074 -24.45990 -22.67518 -21.85363 -21.05051 -20.44904 -19.17615 -17.70656 -17.38613 -16.85375 -16.47646 -16.10064 -15.41667 -15.40399 -15.20771 -15.09578 -14.93233 -14.74714 -14.18198 -13.84672 -13.76603 -13.62867 -13.40974 -13.33237 -13.24609 -12.98000 -12.77843 -12.67923 -12.04671 -11.99770 -11.79755 -11.61462 -11.38758 -11.24469 -11.22182 -11.18257 -11.05089 -10.99519 -10.83120 -10.65443 -10.54905 -9.85746 -9.84606 -9.44962 -8.99476 -8.82663 -8.57885 -8.47623 -6.90831 -6.28144 -3.99757 2.71560 2.94804 3.20117 3.34386 3.50461 3.52059 3.59905 3.62873 4.07918 4.33968 4.40038 4.42223 4.47854 4.52977 4.60053 4.73893 4.78143 4.79818 4.85996 4.88453 4.99599 5.09279 5.10968 5.15336 5.19357 5.21792 5.28272 5.30364 5.35333 5.38037 5.42666 5.46341 5.48904 5.57877 5.62502 5.64441 5.74004 5.79566 5.80240 5.88514 5.92516 5.99944 6.15515 6.54702 6.58683 6.67641 6.96751 7.48066 7.94839 8.41954 8.45446 9.18178 10.80996 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.011687 B = 0.002403 C = 0.002030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2395.252664 B =11647.422752 C =13787.020589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.095 3.905 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.521 4.521 8 H 0.088 0.912 9 S -0.143 6.143 10 C -0.121 4.121 11 C 0.534 3.466 12 O -0.518 6.518 13 N -0.617 5.617 14 C 0.105 3.895 15 C -0.135 4.135 16 C -0.112 4.112 17 C -0.102 4.102 18 H 0.087 0.913 19 C 0.069 3.931 20 N -0.692 5.692 21 C 0.071 3.929 22 C -0.122 4.122 23 H 0.096 0.904 24 C -0.151 4.151 25 C 0.050 3.950 26 O -0.385 6.385 27 C 0.052 3.948 28 C 0.117 3.883 29 H 0.271 0.729 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.067 0.933 33 H 0.090 0.910 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.076 0.924 39 H 0.032 0.968 40 H 0.345 0.655 41 H 0.077 0.923 42 H 0.033 0.967 43 H 0.084 0.916 44 H 0.078 0.922 45 H 0.084 0.916 46 H 0.061 0.939 47 H 0.066 0.934 48 H 0.075 0.925 49 H 0.092 0.908 50 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.359 -18.085 3.008 30.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.113 4.113 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.159 1.159 7 C -0.668 4.668 8 H 0.106 0.894 9 S 0.084 5.916 10 C -0.271 4.271 11 C 0.322 3.678 12 O -0.393 6.393 13 N -0.353 5.353 14 C -0.018 4.018 15 C -0.173 4.173 16 C -0.150 4.150 17 C -0.122 4.122 18 H 0.105 0.895 19 C -0.061 4.061 20 N -0.324 5.324 21 C -0.058 4.058 22 C -0.141 4.141 23 H 0.115 0.885 24 C -0.189 4.189 25 C -0.026 4.026 26 O -0.304 6.304 27 C -0.025 4.025 28 C -0.006 4.006 29 H 0.080 0.920 30 H 0.114 0.886 31 H 0.115 0.885 32 H 0.085 0.915 33 H 0.109 0.891 34 H 0.089 0.911 35 H 0.095 0.905 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.094 0.906 39 H 0.050 0.950 40 H 0.164 0.836 41 H 0.095 0.905 42 H 0.051 0.949 43 H 0.103 0.897 44 H 0.097 0.903 45 H 0.102 0.898 46 H 0.079 0.921 47 H 0.084 0.916 48 H 0.093 0.907 49 H 0.110 0.890 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 25.318 -16.465 3.519 30.405 hybrid contribution -0.837 -0.767 -0.776 1.375 sum 24.481 -17.232 2.743 30.063 Atomic orbital electron populations 1.69937 1.05902 1.27753 1.48112 1.24712 0.94455 0.98970 0.93185 0.86735 0.81925 0.83267 0.79939 1.19218 1.19959 1.15885 1.22307 0.88262 0.97504 1.58739 0.89421 1.84806 1.09265 1.00142 1.97400 1.23307 0.94140 1.04187 1.05513 1.20295 0.90631 0.81819 0.75086 1.90686 1.58710 1.41667 1.48219 1.48082 1.06301 1.05676 1.75229 1.21754 0.94309 0.87317 0.98430 1.21912 0.96408 0.99662 0.99339 1.21515 0.94669 0.96698 1.02094 1.21566 0.93643 0.96630 1.00351 0.89493 1.21945 0.91983 0.92378 0.99802 1.60487 1.03447 1.10892 1.57618 1.21886 0.87566 0.96184 1.00195 1.22797 0.94588 0.96352 1.00360 0.88540 1.23298 0.94624 0.98289 1.02722 1.23367 0.92640 0.93391 0.93213 1.88422 1.17788 1.68158 1.56037 1.23250 0.86055 0.96205 0.96984 1.21593 0.81609 1.00298 0.97103 0.91956 0.88620 0.88542 0.91485 0.89122 0.91119 0.90534 0.91569 0.91847 0.90601 0.95019 0.83597 0.90502 0.94905 0.89698 0.90328 0.89787 0.92056 0.91610 0.90692 0.88957 0.92245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.60 13.97 55.49 0.78 -25.82 16 2 C 0.10 2.80 5.50 -17.43 -0.10 2.70 16 3 Si 0.86 21.93 27.74 -169.99 -4.72 17.21 16 4 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.23 -6.01 6.74 56.52 0.38 -5.63 16 7 C -0.52 -15.02 10.04 30.94 0.31 -14.71 16 8 H 0.09 2.63 8.03 -52.49 -0.42 2.21 16 9 S -0.14 -3.65 18.55 -107.50 -1.99 -5.64 16 10 C -0.12 -2.37 4.50 36.01 0.16 -2.21 16 11 C 0.53 9.73 7.72 -10.99 -0.08 9.64 16 12 O -0.52 -11.27 15.30 5.56 0.08 -11.18 16 13 N -0.62 -8.31 2.98 -172.56 -0.52 -8.83 16 14 C 0.11 1.09 6.33 -3.71 -0.02 1.06 16 15 C -0.13 -1.13 6.08 -26.61 -0.16 -1.29 16 16 C -0.11 -0.83 5.17 -26.69 -0.14 -0.96 16 17 C -0.10 -0.91 2.55 -90.52 -0.23 -1.14 16 18 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 19 C 0.07 0.51 5.15 -3.82 -0.02 0.49 16 20 N -0.69 -5.73 6.50 -113.78 -0.74 -6.47 16 21 C 0.07 0.48 5.07 -3.83 -0.02 0.46 16 22 C -0.12 -0.87 3.25 -88.67 -0.29 -1.16 16 23 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 24 C -0.15 -0.87 6.62 -24.48 -0.16 -1.03 16 25 C 0.05 0.36 7.78 38.19 0.30 0.66 16 26 O -0.38 -4.12 11.36 -35.23 -0.40 -4.52 16 27 C 0.05 0.47 6.59 37.89 0.25 0.72 16 28 C 0.12 1.32 5.36 -3.57 -0.02 1.30 16 29 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 30 H 0.10 1.75 7.94 -51.92 -0.41 1.34 16 31 H 0.10 1.77 7.70 -51.91 -0.40 1.37 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.09 0.98 5.93 -51.93 -0.31 0.67 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.03 0.22 8.14 -51.93 -0.42 -0.21 16 40 H 0.34 3.10 6.33 -39.29 -0.25 2.85 16 41 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.03 0.21 8.07 -51.92 -0.42 -0.20 16 43 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.08 0.42 8.04 -51.93 -0.42 0.00 16 45 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 46 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 47 H 0.07 0.57 7.75 -51.93 -0.40 0.17 16 48 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 49 H 0.09 1.21 5.84 -51.93 -0.30 0.91 16 50 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 401.11 15.07 6.04 6.04 Total: -1.00 -34.12 401.11 -10.51 -44.63 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -8.83 Total: 0.04 kcal Atomic # 6 Polarization: -5.24 SS G_CDS: -0.22 Total: -5.47 kcal Atomic # 7 Polarization: -40.64 SS G_CDS: -0.48 Total: -41.12 kcal Atomic # 8 Polarization: -15.38 SS G_CDS: -0.32 Total: -15.70 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.72 Total: 17.21 kcal Atomic # 16 Polarization: -3.65 SS G_CDS: -1.99 Total: -5.64 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.12 -10.51 -44.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661761811.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.060 kcal (2) G-P(sol) polarization free energy of solvation -34.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds