Wall clock time and date at job start Wed Apr 1 2020 02:24:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86807 * 119.99909 * 2 1 4 4 H 1.48502 * 109.46875 * 269.99802 * 3 2 1 5 5 H 1.48500 * 109.47129 * 29.99229 * 3 2 1 6 6 H 1.48490 * 109.47158 * 149.99710 * 3 2 1 7 7 C 1.38794 * 120.00368 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99632 * 0.02562 * 7 2 1 9 9 S 1.76205 * 120.00200 * 180.02562 * 7 2 1 10 10 C 1.81001 * 99.99931 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.47141 * 180.02562 * 10 9 7 12 12 O 1.21281 * 119.99924 * 359.97438 * 11 10 9 13 13 N 1.34773 * 119.99924 * 180.02562 * 11 10 9 14 14 C 1.46926 * 120.63302 * 359.97438 * 13 11 10 15 15 C 1.53191 * 108.89109 * 233.67613 * 14 13 11 16 16 C 1.53035 * 109.31327 * 305.29292 * 15 14 13 17 17 C 1.53038 * 109.54175 * 61.36680 * 16 15 14 18 18 H 1.09002 * 109.49557 * 58.58503 * 17 16 15 19 19 C 1.53001 * 109.49833 * 178.68412 * 17 16 15 20 20 N 1.46903 * 109.46806 * 185.00221 * 19 17 16 21 21 C 1.46894 * 110.99988 * 180.02562 * 20 19 17 22 22 C 1.52998 * 109.47236 * 179.97438 * 21 20 19 23 23 H 1.08998 * 110.75454 * 57.01742 * 22 21 20 24 24 C 1.55306 * 110.84730 * 180.71589 * 22 21 20 25 25 C 1.54947 * 100.94319 * 152.32281 * 24 22 21 26 26 O 1.43641 * 105.13542 * 323.55472 * 25 24 22 27 27 C 1.43232 * 109.97450 * 24.42374 * 26 25 24 28 28 C 1.47207 * 120.81153 * 180.13388 * 13 11 10 29 29 H 0.96999 * 120.00104 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.47030 * 59.99687 * 10 9 7 31 31 H 1.09003 * 109.46809 * 300.00106 * 10 9 7 32 32 H 1.09002 * 109.58861 * 113.81616 * 14 13 11 33 33 H 1.08996 * 109.58519 * 353.53507 * 14 13 11 34 34 H 1.09003 * 109.49975 * 65.24379 * 15 14 13 35 35 H 1.09004 * 109.49655 * 185.34207 * 15 14 13 36 36 H 1.09003 * 109.46332 * 181.39145 * 16 15 14 37 37 H 1.09004 * 109.45942 * 301.34050 * 16 15 14 38 38 H 1.08998 * 109.46829 * 304.99842 * 19 17 16 39 39 H 1.08995 * 109.46906 * 65.00163 * 19 17 16 40 40 H 1.00902 * 110.99979 * 303.95132 * 20 19 17 41 41 H 1.08997 * 109.47131 * 299.99636 * 21 20 19 42 42 H 1.09008 * 109.47185 * 59.99396 * 21 20 19 43 43 H 1.09001 * 111.12198 * 270.23735 * 24 22 21 44 44 H 1.08998 * 111.12932 * 34.40396 * 24 22 21 45 45 H 1.09001 * 110.31065 * 204.63319 * 25 24 22 46 46 H 1.09006 * 110.30996 * 82.47007 * 25 24 22 47 47 H 1.08998 * 109.83531 * 238.77788 * 27 26 25 48 48 H 1.09004 * 109.83438 * 117.80283 * 27 26 25 49 49 H 1.08996 * 109.53610 * 6.53712 * 28 13 11 50 50 H 1.09002 * 109.68003 * 246.23180 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6528 0.6999 6 1 3.5478 1.4403 0.7000 7 6 2.0104 -1.2019 0.0005 8 1 1.4704 -2.1372 0.0005 9 16 3.7724 -1.2019 0.0012 10 6 4.0867 -2.9844 0.0009 11 6 5.5732 -3.2324 0.0021 12 8 6.3442 -2.2961 0.0025 13 7 6.0458 -4.4945 0.0016 14 6 5.1244 -5.6389 0.0005 15 6 5.4816 -6.5644 1.1679 16 6 6.9593 -6.9509 1.0736 17 6 7.8248 -5.6927 1.1725 18 1 7.6212 -5.1843 2.1150 19 6 9.3028 -6.0834 1.1111 20 7 10.1338 -4.8912 1.3259 21 6 11.5624 -5.2287 1.2730 22 6 12.3939 -3.9646 1.4999 23 1 12.1341 -3.4967 2.4495 24 6 13.9126 -4.2825 1.4325 25 6 14.4778 -2.9191 0.9608 26 8 13.4981 -2.4032 0.0458 27 6 12.2148 -2.9720 0.3311 28 6 7.4942 -4.7573 0.0057 29 1 -0.4850 0.8400 -0.0004 30 1 3.6441 -3.4312 -0.8893 31 1 3.6434 -3.4316 0.8907 32 1 5.2187 -6.1831 -0.9393 33 1 4.1005 -5.2837 0.1158 34 1 5.3001 -6.0478 2.1104 35 1 4.8667 -7.4632 1.1208 36 1 7.2100 -7.6292 1.8891 37 1 7.1451 -7.4455 0.1202 38 1 9.5164 -6.8196 1.8860 39 1 9.5254 -6.5101 0.1331 40 1 9.9084 -4.1684 0.6589 41 1 11.7921 -5.9592 2.0487 42 1 11.8005 -5.6493 0.2960 43 1 14.3018 -4.5504 2.4148 44 1 14.1180 -5.0663 0.7035 45 1 15.4322 -3.0603 0.4534 46 1 14.5956 -2.2445 1.8089 47 1 11.8401 -3.4983 -0.5468 48 1 11.5170 -2.1852 0.6178 49 1 8.0347 -3.8184 0.1257 50 1 7.7845 -5.2284 -0.9335 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001661761811.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:24:09 Heat of formation + Delta-G solvation = -118.218173 kcal Electronic energy + Delta-G solvation = -27655.691299 eV Core-core repulsion = 23807.211013 eV Total energy + Delta-G solvation = -3848.480285 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.176 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.26525 -40.50782 -38.90565 -37.10490 -34.70026 -34.63819 -33.23682 -32.13015 -30.93666 -29.98362 -27.88837 -26.88459 -26.21432 -25.13067 -23.27645 -22.54618 -21.78588 -21.23600 -20.39691 -19.52014 -18.29727 -17.95525 -17.24414 -17.13324 -16.98108 -16.65469 -16.27879 -15.93595 -15.81046 -15.63097 -15.50556 -15.01170 -14.92979 -14.64269 -14.38031 -14.24903 -14.06906 -13.99880 -13.84816 -13.50061 -13.36873 -13.28591 -13.02819 -12.77346 -12.56596 -12.35526 -12.20373 -12.09638 -11.88336 -11.83493 -11.77579 -11.72546 -11.56566 -11.32986 -11.18144 -10.89573 -10.55789 -10.52581 -9.68691 -9.40173 -9.01487 -8.52484 -6.23513 0.96371 1.30214 1.45147 1.51448 1.53460 2.06332 2.24183 2.67486 2.85614 2.90385 3.05789 3.50603 3.53588 3.78419 3.80886 3.88541 3.89297 3.99299 4.07128 4.16818 4.22111 4.23773 4.31869 4.34794 4.38350 4.43463 4.53182 4.59935 4.65491 4.69232 4.73924 4.76469 4.81742 4.85746 4.88270 4.92764 4.95494 5.00621 5.07287 5.16942 5.25889 5.26544 5.47285 5.55004 5.69936 5.97628 6.08767 6.10186 6.25344 6.31192 6.92738 7.08116 8.59757 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.011687 B = 0.002403 C = 0.002030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2395.252664 B =11647.422752 C =13787.020589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.046 3.954 3 Si 0.913 3.087 4 H -0.262 1.262 5 H -0.258 1.258 6 H -0.239 1.239 7 C -0.527 4.527 8 H 0.063 0.937 9 S -0.178 6.178 10 C -0.105 4.105 11 C 0.532 3.468 12 O -0.563 6.563 13 N -0.604 5.604 14 C 0.095 3.905 15 C -0.131 4.131 16 C -0.107 4.107 17 C -0.093 4.093 18 H 0.061 0.939 19 C 0.074 3.926 20 N -0.708 5.708 21 C 0.076 3.924 22 C -0.117 4.117 23 H 0.087 0.913 24 C -0.141 4.141 25 C 0.040 3.960 26 O -0.415 6.415 27 C 0.049 3.951 28 C 0.114 3.886 29 H 0.277 0.723 30 H 0.110 0.890 31 H 0.109 0.891 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.054 0.946 35 H 0.101 0.899 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.088 0.912 39 H 0.045 0.955 40 H 0.337 0.663 41 H 0.088 0.912 42 H 0.039 0.961 43 H 0.103 0.897 44 H 0.087 0.913 45 H 0.097 0.903 46 H 0.063 0.937 47 H 0.067 0.933 48 H 0.057 0.943 49 H 0.068 0.932 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.100 -20.663 3.145 33.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.159 4.159 3 Si 0.735 3.265 4 H -0.187 1.187 5 H -0.182 1.182 6 H -0.162 1.162 7 C -0.675 4.675 8 H 0.081 0.919 9 S 0.049 5.951 10 C -0.255 4.255 11 C 0.319 3.681 12 O -0.442 6.442 13 N -0.338 5.338 14 C -0.027 4.027 15 C -0.169 4.169 16 C -0.144 4.144 17 C -0.112 4.112 18 H 0.080 0.920 19 C -0.055 4.055 20 N -0.340 5.340 21 C -0.053 4.053 22 C -0.136 4.136 23 H 0.105 0.895 24 C -0.179 4.179 25 C -0.036 4.036 26 O -0.335 6.335 27 C -0.028 4.028 28 C -0.008 4.008 29 H 0.087 0.913 30 H 0.129 0.871 31 H 0.127 0.873 32 H 0.110 0.890 33 H 0.102 0.898 34 H 0.073 0.927 35 H 0.120 0.880 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.107 0.893 39 H 0.063 0.937 40 H 0.156 0.844 41 H 0.107 0.893 42 H 0.057 0.943 43 H 0.122 0.878 44 H 0.106 0.894 45 H 0.115 0.885 46 H 0.082 0.918 47 H 0.085 0.915 48 H 0.075 0.925 49 H 0.087 0.913 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 27.060 -19.110 3.666 33.330 hybrid contribution -1.345 -0.125 -0.827 1.584 sum 25.715 -19.235 2.839 32.238 Atomic orbital electron populations 1.70009 1.07194 1.29009 1.49096 1.25541 0.95287 1.02172 0.92921 0.85884 0.80662 0.79721 0.80214 1.18700 1.18234 1.16249 1.22431 0.90066 0.96711 1.58267 0.91874 1.84746 1.06643 1.06189 1.97553 1.23267 0.95996 0.99426 1.06856 1.20023 0.89495 0.83097 0.75454 1.90670 1.59217 1.43413 1.50904 1.48120 1.07998 1.04833 1.72852 1.22089 0.93263 0.86591 1.00752 1.21906 0.97742 0.99847 0.97403 1.21517 0.93270 0.95921 1.03738 1.21471 0.95333 0.96659 0.97767 0.92000 1.21929 0.90507 0.92148 1.00946 1.60523 1.04528 1.11272 1.57655 1.21881 0.86525 0.95946 1.00908 1.22737 0.95910 0.96059 0.98887 0.89457 1.23276 0.93104 0.97529 1.03949 1.23601 0.92574 0.94320 0.93076 1.88385 1.18772 1.69076 1.57234 1.23255 0.85416 0.96192 0.97899 1.21788 0.79670 1.00077 0.99270 0.91345 0.87143 0.87279 0.89019 0.89830 0.92696 0.88028 0.89869 0.90136 0.89339 0.93717 0.84438 0.89324 0.94252 0.87820 0.89440 0.88465 0.91827 0.91523 0.92450 0.91329 0.90183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.97 13.97 21.65 0.30 -55.67 16 2 C 0.05 2.74 5.50 84.86 0.47 3.21 16 3 Si 0.91 45.65 27.74 68.60 1.90 47.56 16 4 H -0.26 -12.80 7.11 99.48 0.71 -12.09 16 5 H -0.26 -12.07 7.11 99.48 0.71 -11.36 16 6 H -0.24 -11.99 6.74 99.48 0.67 -11.32 16 7 C -0.53 -31.01 10.04 67.95 0.68 -30.33 16 8 H 0.06 3.90 8.03 -2.91 -0.02 3.87 16 9 S -0.18 -9.22 18.55 -56.49 -1.05 -10.26 16 10 C -0.10 -4.10 4.50 71.24 0.32 -3.78 16 11 C 0.53 19.38 7.72 87.66 0.68 20.05 16 12 O -0.56 -25.06 15.30 -3.03 -0.05 -25.10 16 13 N -0.60 -15.57 2.98 -818.26 -2.44 -18.01 16 14 C 0.09 1.73 6.33 86.36 0.55 2.28 16 15 C -0.13 -1.80 6.08 30.67 0.19 -1.61 16 16 C -0.11 -1.19 5.17 30.62 0.16 -1.03 16 17 C -0.09 -1.47 2.55 -10.73 -0.03 -1.49 16 18 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 19 C 0.07 0.91 5.15 86.30 0.44 1.35 16 20 N -0.71 -10.90 6.50 -513.90 -3.34 -14.24 16 21 C 0.08 0.89 5.07 86.30 0.44 1.32 16 22 C -0.12 -1.56 3.25 -9.53 -0.03 -1.60 16 23 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 24 C -0.14 -1.35 6.62 32.05 0.21 -1.14 16 25 C 0.04 0.55 7.78 72.65 0.56 1.11 16 26 O -0.41 -8.97 11.36 -148.98 -1.69 -10.66 16 27 C 0.05 0.91 6.59 72.45 0.48 1.38 16 28 C 0.11 2.43 5.36 86.30 0.46 2.89 16 29 H 0.28 15.66 8.31 -92.71 -0.77 14.89 16 30 H 0.11 3.98 7.94 -2.39 -0.02 3.96 16 31 H 0.11 3.98 7.70 -2.39 -0.02 3.96 16 32 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.08 1.66 5.93 -2.39 -0.01 1.64 16 34 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.09 0.90 8.14 -2.39 -0.02 0.89 16 39 H 0.04 0.45 8.14 -2.39 -0.02 0.44 16 40 H 0.34 6.04 6.33 -89.69 -0.57 5.47 16 41 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.04 0.42 8.07 -2.38 -0.02 0.40 16 43 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 44 H 0.09 0.71 8.04 -2.39 -0.02 0.69 16 45 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 46 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 47 H 0.07 1.18 7.75 -2.39 -0.02 1.16 16 48 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 49 H 0.07 1.83 5.84 -2.39 -0.01 1.82 16 50 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -75.93 401.11 -0.48 -76.41 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: 0.31 Total: 17.36 kcal Atomic # 6 Polarization: -12.95 SS G_CDS: 5.58 Total: -7.38 kcal Atomic # 7 Polarization: -82.44 SS G_CDS: -5.48 Total: -87.92 kcal Atomic # 8 Polarization: -34.02 SS G_CDS: -1.74 Total: -35.76 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 1.90 Total: 47.56 kcal Atomic # 16 Polarization: -9.22 SS G_CDS: -1.05 Total: -10.26 kcal Total: -75.93 -0.48 -76.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661761811.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.811 kcal (2) G-P(sol) polarization free energy of solvation -75.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds