Wall clock time and date at job start Wed Apr 1 2020 02:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86802 * 119.99521 * 2 1 4 4 H 1.48506 * 109.46979 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47362 * 300.00631 * 3 2 1 6 6 H 1.48494 * 109.46930 * 60.00559 * 3 2 1 7 7 C 1.38790 * 120.00368 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00239 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99947 * 359.97438 * 7 2 1 10 10 C 1.81006 * 100.00068 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.47373 * 179.97438 * 10 9 7 12 12 O 1.21286 * 120.00049 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00585 * 179.97438 * 11 10 9 14 14 C 1.46933 * 120.62542 * 0.03107 * 13 11 10 15 15 C 1.53184 * 108.77731 * 126.36610 * 14 13 11 16 16 C 1.53038 * 109.31335 * 54.63084 * 15 14 13 17 17 C 1.53036 * 109.54131 * 298.63753 * 16 15 14 18 18 H 1.09004 * 109.52020 * 301.39645 * 17 16 15 19 19 C 1.53000 * 109.50141 * 181.31482 * 17 16 15 20 20 N 1.46896 * 109.47453 * 175.15794 * 19 17 16 21 21 C 1.46897 * 111.00156 * 180.02562 * 20 19 17 22 22 C 1.53003 * 109.47261 * 180.02562 * 21 20 19 23 23 H 1.09000 * 110.43606 * 56.09010 * 22 21 20 24 24 C 1.54810 * 110.49192 * 178.78081 * 22 21 20 25 25 C 1.54991 * 102.09350 * 139.55679 * 24 22 21 26 26 O 1.44378 * 103.49061 * 322.97120 * 25 24 22 27 27 C 1.43745 * 106.97348 * 40.06796 * 26 25 24 28 28 C 1.46917 * 120.63656 * 180.02562 * 13 11 10 29 29 H 0.96995 * 120.00660 * 359.97438 * 1 2 3 30 30 H 1.09007 * 109.46939 * 60.00119 * 10 9 7 31 31 H 1.08995 * 109.47234 * 300.00414 * 10 9 7 32 32 H 1.09000 * 109.58220 * 246.15650 * 14 13 11 33 33 H 1.09004 * 109.58853 * 6.43314 * 14 13 11 34 34 H 1.08995 * 109.50083 * 174.58332 * 15 14 13 35 35 H 1.09001 * 109.49774 * 294.64990 * 15 14 13 36 36 H 1.09003 * 109.46301 * 178.61443 * 16 15 14 37 37 H 1.09001 * 109.46026 * 58.65921 * 16 15 14 38 38 H 1.09003 * 109.47170 * 55.16080 * 19 17 16 39 39 H 1.08999 * 109.47388 * 295.16216 * 19 17 16 40 40 H 1.00900 * 111.00065 * 303.95985 * 20 19 17 41 41 H 1.08997 * 109.47543 * 60.00551 * 21 20 19 42 42 H 1.08999 * 109.46991 * 299.99845 * 21 20 19 43 43 H 1.09005 * 110.90592 * 257.75654 * 24 22 21 44 44 H 1.09005 * 110.90412 * 21.35718 * 24 22 21 45 45 H 1.08993 * 110.62131 * 81.47823 * 25 24 22 46 46 H 1.09002 * 110.61455 * 204.47595 * 25 24 22 47 47 H 1.09004 * 109.88020 * 214.06063 * 27 26 25 48 48 H 1.09000 * 109.88175 * 92.90294 * 27 26 25 49 49 H 1.08996 * 109.58571 * 113.84503 * 28 13 11 50 50 H 1.09000 * 109.58957 * 353.42244 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7103 1.3466 -0.0006 5 1 1.8913 2.3966 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0104 -1.2019 -0.0005 8 1 3.0903 -1.2019 -0.0010 9 16 1.1295 -2.7279 -0.0005 10 6 2.5161 -3.8913 -0.0005 11 6 1.9878 -5.3026 0.0001 12 8 0.7915 -5.5023 0.0000 13 7 2.8445 -6.3430 -0.0003 14 6 4.2964 -6.1171 -0.0007 15 6 4.9161 -6.8912 1.1669 16 6 4.5091 -8.3633 1.0710 17 6 2.9863 -8.4807 1.1678 18 1 2.6470 -8.0505 2.1102 19 6 2.5826 -9.9551 1.1048 20 7 1.1336 -10.0755 1.3138 21 6 0.7089 -11.4807 1.2605 22 6 -0.8027 -11.5655 1.4813 23 1 -1.3290 -10.9498 0.7519 24 6 -1.2808 -13.0356 1.3992 25 6 -2.3176 -13.1046 2.5493 26 8 -1.7382 -12.2705 3.5755 27 6 -1.1636 -11.1305 2.9149 28 6 2.3446 -7.7245 -0.0003 29 1 -0.4851 0.8399 0.0004 30 1 3.1247 -3.7312 0.8895 31 1 3.1247 -3.7312 -0.8904 32 1 4.7209 -6.4710 -0.9402 33 1 4.5006 -5.0526 0.1145 34 1 6.0021 -6.8104 1.1213 35 1 4.5596 -6.4753 2.1092 36 1 4.9689 -8.9212 1.8868 37 1 4.8448 -8.7716 0.1178 38 1 3.1090 -10.5095 1.8819 39 1 2.8438 -10.3620 0.1280 40 1 0.8570 -9.6473 2.1846 41 1 1.2222 -12.0453 2.0388 42 1 0.9572 -11.8985 0.2848 43 1 -1.7525 -13.2382 0.4376 44 1 -0.4547 -13.7239 1.5784 45 1 -3.2777 -12.7033 2.2251 46 1 -2.4289 -14.1290 2.9047 47 1 -0.2650 -10.8104 3.4424 48 1 -1.8876 -10.3162 2.8839 49 1 2.6103 -8.2093 -0.9397 50 1 1.2610 -7.7211 0.1178 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661761812.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:24:24 Heat of formation + Delta-G solvation = -94.234365 kcal Electronic energy + Delta-G solvation = -27507.835402 eV Core-core repulsion = 23660.395132 eV Total energy + Delta-G solvation = -3847.440269 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.176 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.05622 -39.77847 -37.71707 -36.22734 -33.68003 -32.41740 -32.32293 -31.27274 -29.71461 -28.93658 -26.15541 -25.55536 -24.91016 -24.39851 -22.70311 -21.86839 -20.94735 -20.35303 -18.97372 -17.63857 -17.24955 -16.66317 -16.48850 -16.02053 -15.47131 -15.28858 -15.08981 -15.07119 -14.79288 -14.76225 -14.16202 -13.89690 -13.78539 -13.33340 -13.26028 -13.15995 -13.02468 -12.81303 -12.59801 -12.39519 -12.08960 -11.89928 -11.82702 -11.52399 -11.25249 -11.21352 -11.10935 -11.06308 -10.99756 -10.97478 -10.76334 -10.72721 -10.53763 -9.99704 -9.76926 -9.26005 -9.05779 -8.74268 -8.40856 -8.18708 -6.47324 -6.19870 -3.90001 3.00658 3.13501 3.22451 3.28004 3.32487 3.59135 3.65036 3.68122 4.18690 4.21888 4.41732 4.49805 4.53330 4.64376 4.67852 4.79907 4.84643 4.90713 4.96264 5.07991 5.08453 5.15164 5.20370 5.27156 5.28454 5.32956 5.39030 5.39779 5.44296 5.46252 5.51009 5.51291 5.59409 5.63569 5.70811 5.76962 5.79959 5.84871 5.92436 5.93919 6.15184 6.18607 6.22922 6.49640 6.67946 6.75684 7.03518 7.61326 7.66533 8.37153 8.65416 9.25434 10.87582 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.014118 B = 0.002109 C = 0.001890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.751657 B =13271.699422 C =14811.068463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.918 3.082 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.534 4.534 8 H 0.072 0.928 9 S -0.062 6.062 10 C -0.150 4.150 11 C 0.534 3.466 12 O -0.516 6.516 13 N -0.622 5.622 14 C 0.107 3.893 15 C -0.134 4.134 16 C -0.112 4.112 17 C -0.101 4.101 18 H 0.074 0.926 19 C 0.068 3.932 20 N -0.689 5.689 21 C 0.070 3.930 22 C -0.123 4.123 23 H 0.096 0.904 24 C -0.150 4.150 25 C 0.045 3.955 26 O -0.381 6.381 27 C 0.049 3.951 28 C 0.128 3.872 29 H 0.268 0.732 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.065 0.935 33 H 0.088 0.912 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.032 0.968 39 H 0.074 0.926 40 H 0.343 0.657 41 H 0.032 0.968 42 H 0.075 0.925 43 H 0.082 0.918 44 H 0.077 0.923 45 H 0.062 0.938 46 H 0.091 0.909 47 H 0.079 0.921 48 H 0.065 0.935 49 H 0.058 0.942 50 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.933 -26.948 2.744 27.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.682 4.682 8 H 0.091 0.909 9 S 0.165 5.835 10 C -0.301 4.301 11 C 0.322 3.678 12 O -0.390 6.390 13 N -0.358 5.358 14 C -0.017 4.017 15 C -0.173 4.173 16 C -0.150 4.150 17 C -0.120 4.120 18 H 0.093 0.907 19 C -0.061 4.061 20 N -0.321 5.321 21 C -0.059 4.059 22 C -0.142 4.142 23 H 0.115 0.885 24 C -0.188 4.188 25 C -0.031 4.031 26 O -0.300 6.300 27 C -0.028 4.028 28 C 0.005 3.995 29 H 0.077 0.923 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.083 0.917 33 H 0.107 0.893 34 H 0.093 0.907 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.050 0.950 39 H 0.093 0.907 40 H 0.161 0.839 41 H 0.050 0.950 42 H 0.094 0.906 43 H 0.101 0.899 44 H 0.095 0.905 45 H 0.080 0.920 46 H 0.110 0.890 47 H 0.097 0.903 48 H 0.083 0.917 49 H 0.077 0.923 50 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 4.830 -27.035 2.301 27.559 hybrid contribution 2.467 1.018 0.599 2.735 sum 7.297 -26.017 2.900 27.176 Atomic orbital electron populations 1.70029 1.05931 1.27304 1.47005 1.24993 0.95027 0.99016 0.94609 0.86124 0.79581 0.81942 0.77885 1.19631 1.20585 1.20584 1.22902 0.94911 0.91678 1.58717 0.90935 1.85407 1.05101 0.96316 1.96671 1.23553 1.06358 0.95613 1.04556 1.20299 0.86258 0.86157 0.75095 1.90692 1.15140 1.85219 1.47929 1.48138 1.06189 1.06049 1.75383 1.21702 0.80375 1.01451 0.98167 1.21903 1.00517 0.95454 0.99396 1.21522 0.94873 0.96594 1.02039 1.21557 0.95498 0.94699 1.00294 0.90732 1.21948 0.87413 0.95723 1.01061 1.60454 1.14350 1.15533 1.41767 1.21949 0.93656 0.89149 1.01136 1.22620 0.96812 0.96749 0.98002 0.88539 1.23174 0.99536 0.96256 0.99830 1.23553 0.96028 0.95727 0.87806 1.88876 1.75217 1.34934 1.30983 1.23274 0.98314 0.89198 0.91992 1.21461 1.01299 0.80281 0.96455 0.92261 0.89411 0.89398 0.91680 0.89327 0.90736 0.91312 0.91919 0.91692 0.95008 0.90741 0.83860 0.95023 0.90610 0.89921 0.90466 0.92002 0.89049 0.90280 0.91707 0.92343 0.87918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.32 13.22 55.49 0.73 -25.58 16 2 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.50 29.55 -169.99 -5.02 16.48 16 4 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.53 -15.30 9.50 30.94 0.29 -15.01 16 8 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 9 S -0.06 -1.70 20.57 -107.50 -2.21 -3.91 16 10 C -0.15 -3.11 4.50 36.00 0.16 -2.95 16 11 C 0.53 10.42 7.72 -10.99 -0.08 10.33 16 12 O -0.52 -12.04 15.28 5.55 0.08 -11.96 16 13 N -0.62 -9.04 2.97 -172.75 -0.51 -9.55 16 14 C 0.11 1.18 6.34 -3.71 -0.02 1.16 16 15 C -0.13 -1.19 6.08 -26.62 -0.16 -1.35 16 16 C -0.11 -0.89 5.17 -26.69 -0.14 -1.03 16 17 C -0.10 -0.95 2.48 -90.48 -0.22 -1.18 16 18 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 19 C 0.07 0.54 5.08 -3.83 -0.02 0.52 16 20 N -0.69 -5.90 6.07 -113.78 -0.69 -6.59 16 21 C 0.07 0.51 4.89 -3.82 -0.02 0.49 16 22 C -0.12 -0.91 3.30 -89.09 -0.29 -1.20 16 23 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 24 C -0.15 -0.91 6.71 -24.73 -0.17 -1.08 16 25 C 0.05 0.32 7.72 38.21 0.29 0.62 16 26 O -0.38 -3.88 11.52 -35.23 -0.41 -4.28 16 27 C 0.05 0.43 6.93 37.74 0.26 0.69 16 28 C 0.13 1.61 5.54 -3.70 -0.02 1.58 16 29 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 30 H 0.09 1.68 7.70 -51.91 -0.40 1.28 16 31 H 0.09 1.69 7.94 -51.92 -0.41 1.28 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.09 1.02 5.93 -51.93 -0.31 0.71 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.03 0.23 8.14 -51.93 -0.42 -0.19 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.34 2.98 7.37 -39.29 -0.29 2.69 16 41 H 0.03 0.23 8.14 -51.93 -0.42 -0.19 16 42 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.08 0.44 7.87 -51.93 -0.41 0.03 16 45 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.08 0.65 6.82 -51.93 -0.35 0.30 16 48 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 49 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 50 H 0.10 1.57 6.79 -51.93 -0.35 1.22 16 LS Contribution 404.74 15.07 6.10 6.10 Total: -1.00 -34.58 404.74 -11.00 -45.58 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -8.83 Total: 0.14 kcal Atomic # 6 Polarization: -6.18 SS G_CDS: -0.23 Total: -6.42 kcal Atomic # 7 Polarization: -41.26 SS G_CDS: -0.47 Total: -41.73 kcal Atomic # 8 Polarization: -15.92 SS G_CDS: -0.32 Total: -16.24 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.58 -11.00 -45.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661761812.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.655 kcal (2) G-P(sol) polarization free energy of solvation -34.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds