Wall clock time and date at job start Wed Apr 1 2020 02:24:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86802 * 119.99521 * 2 1 4 4 H 1.48506 * 109.46979 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47362 * 300.00631 * 3 2 1 6 6 H 1.48494 * 109.46930 * 60.00559 * 3 2 1 7 7 C 1.38790 * 120.00368 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00239 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99947 * 359.97438 * 7 2 1 10 10 C 1.81006 * 100.00068 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.47373 * 179.97438 * 10 9 7 12 12 O 1.21286 * 120.00049 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00585 * 179.97438 * 11 10 9 14 14 C 1.46933 * 120.62542 * 0.03107 * 13 11 10 15 15 C 1.53184 * 108.77731 * 126.36610 * 14 13 11 16 16 C 1.53038 * 109.31335 * 54.63084 * 15 14 13 17 17 C 1.53036 * 109.54131 * 298.63753 * 16 15 14 18 18 H 1.09004 * 109.52020 * 301.39645 * 17 16 15 19 19 C 1.53000 * 109.50141 * 181.31482 * 17 16 15 20 20 N 1.46896 * 109.47453 * 175.15794 * 19 17 16 21 21 C 1.46897 * 111.00156 * 180.02562 * 20 19 17 22 22 C 1.53003 * 109.47261 * 180.02562 * 21 20 19 23 23 H 1.09000 * 110.43606 * 56.09010 * 22 21 20 24 24 C 1.54810 * 110.49192 * 178.78081 * 22 21 20 25 25 C 1.54991 * 102.09350 * 139.55679 * 24 22 21 26 26 O 1.44378 * 103.49061 * 322.97120 * 25 24 22 27 27 C 1.43745 * 106.97348 * 40.06796 * 26 25 24 28 28 C 1.46917 * 120.63656 * 180.02562 * 13 11 10 29 29 H 0.96995 * 120.00660 * 359.97438 * 1 2 3 30 30 H 1.09007 * 109.46939 * 60.00119 * 10 9 7 31 31 H 1.08995 * 109.47234 * 300.00414 * 10 9 7 32 32 H 1.09000 * 109.58220 * 246.15650 * 14 13 11 33 33 H 1.09004 * 109.58853 * 6.43314 * 14 13 11 34 34 H 1.08995 * 109.50083 * 174.58332 * 15 14 13 35 35 H 1.09001 * 109.49774 * 294.64990 * 15 14 13 36 36 H 1.09003 * 109.46301 * 178.61443 * 16 15 14 37 37 H 1.09001 * 109.46026 * 58.65921 * 16 15 14 38 38 H 1.09003 * 109.47170 * 55.16080 * 19 17 16 39 39 H 1.08999 * 109.47388 * 295.16216 * 19 17 16 40 40 H 1.00900 * 111.00065 * 303.95985 * 20 19 17 41 41 H 1.08997 * 109.47543 * 60.00551 * 21 20 19 42 42 H 1.08999 * 109.46991 * 299.99845 * 21 20 19 43 43 H 1.09005 * 110.90592 * 257.75654 * 24 22 21 44 44 H 1.09005 * 110.90412 * 21.35718 * 24 22 21 45 45 H 1.08993 * 110.62131 * 81.47823 * 25 24 22 46 46 H 1.09002 * 110.61455 * 204.47595 * 25 24 22 47 47 H 1.09004 * 109.88020 * 214.06063 * 27 26 25 48 48 H 1.09000 * 109.88175 * 92.90294 * 27 26 25 49 49 H 1.08996 * 109.58571 * 113.84503 * 28 13 11 50 50 H 1.09000 * 109.58957 * 353.42244 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7103 1.3466 -0.0006 5 1 1.8913 2.3966 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0104 -1.2019 -0.0005 8 1 3.0903 -1.2019 -0.0010 9 16 1.1295 -2.7279 -0.0005 10 6 2.5161 -3.8913 -0.0005 11 6 1.9878 -5.3026 0.0001 12 8 0.7915 -5.5023 0.0000 13 7 2.8445 -6.3430 -0.0003 14 6 4.2964 -6.1171 -0.0007 15 6 4.9161 -6.8912 1.1669 16 6 4.5091 -8.3633 1.0710 17 6 2.9863 -8.4807 1.1678 18 1 2.6470 -8.0505 2.1102 19 6 2.5826 -9.9551 1.1048 20 7 1.1336 -10.0755 1.3138 21 6 0.7089 -11.4807 1.2605 22 6 -0.8027 -11.5655 1.4813 23 1 -1.3290 -10.9498 0.7519 24 6 -1.2808 -13.0356 1.3992 25 6 -2.3176 -13.1046 2.5493 26 8 -1.7382 -12.2705 3.5755 27 6 -1.1636 -11.1305 2.9149 28 6 2.3446 -7.7245 -0.0003 29 1 -0.4851 0.8399 0.0004 30 1 3.1247 -3.7312 0.8895 31 1 3.1247 -3.7312 -0.8904 32 1 4.7209 -6.4710 -0.9402 33 1 4.5006 -5.0526 0.1145 34 1 6.0021 -6.8104 1.1213 35 1 4.5596 -6.4753 2.1092 36 1 4.9689 -8.9212 1.8868 37 1 4.8448 -8.7716 0.1178 38 1 3.1090 -10.5095 1.8819 39 1 2.8438 -10.3620 0.1280 40 1 0.8570 -9.6473 2.1846 41 1 1.2222 -12.0453 2.0388 42 1 0.9572 -11.8985 0.2848 43 1 -1.7525 -13.2382 0.4376 44 1 -0.4547 -13.7239 1.5784 45 1 -3.2777 -12.7033 2.2251 46 1 -2.4289 -14.1290 2.9047 47 1 -0.2650 -10.8104 3.4424 48 1 -1.8876 -10.3162 2.8839 49 1 2.6103 -8.2093 -0.9397 50 1 1.2610 -7.7211 0.1178 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001661761812.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:24:21 Heat of formation + Delta-G solvation = -117.979444 kcal Electronic energy + Delta-G solvation = -27508.865066 eV Core-core repulsion = 23660.395132 eV Total energy + Delta-G solvation = -3848.469933 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.176 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.18719 -40.50969 -38.82824 -37.06432 -34.61748 -34.57327 -33.17152 -32.12678 -30.85439 -29.90239 -27.71572 -26.86030 -26.05838 -25.11247 -23.33503 -22.60322 -21.75352 -21.12597 -20.33210 -19.43878 -18.13301 -17.87563 -17.17193 -17.04874 -16.88393 -16.61111 -16.20749 -16.00723 -15.91001 -15.69667 -15.50451 -14.92819 -14.80948 -14.50256 -14.29511 -14.00778 -13.96382 -13.88274 -13.65187 -13.40836 -13.16490 -13.07559 -12.91685 -12.90238 -12.56725 -12.50358 -12.12815 -12.01424 -11.87032 -11.78907 -11.69802 -11.65823 -11.54484 -11.30199 -11.16220 -10.80432 -10.68197 -10.25623 -9.62589 -9.34675 -8.67692 -8.34839 -6.13374 1.26104 1.41284 1.46272 1.57588 1.60499 2.15257 2.27260 2.98786 2.99108 3.06994 3.26272 3.60807 3.68906 3.78464 3.83228 3.88269 3.92950 4.05836 4.11206 4.22771 4.23880 4.27186 4.36331 4.39667 4.43390 4.49036 4.57751 4.63739 4.70309 4.73922 4.74850 4.76471 4.80802 4.87871 4.92644 4.95494 4.98806 5.04866 5.13172 5.15593 5.21987 5.27139 5.41525 5.46979 5.63766 5.86887 6.08750 6.19752 6.34923 6.36205 7.06153 7.18814 8.74714 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.014118 B = 0.002109 C = 0.001890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.751657 B =13271.699422 C =14811.068463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.012 3.988 3 Si 1.000 3.000 4 H -0.256 1.256 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.544 4.544 8 H 0.083 0.917 9 S -0.154 6.154 10 C -0.122 4.122 11 C 0.530 3.470 12 O -0.567 6.567 13 N -0.608 5.608 14 C 0.096 3.904 15 C -0.130 4.130 16 C -0.107 4.107 17 C -0.091 4.091 18 H 0.056 0.944 19 C 0.074 3.926 20 N -0.706 5.706 21 C 0.077 3.923 22 C -0.120 4.120 23 H 0.085 0.915 24 C -0.142 4.142 25 C 0.037 3.963 26 O -0.406 6.406 27 C 0.047 3.953 28 C 0.127 3.873 29 H 0.271 0.729 30 H 0.105 0.895 31 H 0.106 0.894 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.102 0.898 35 H 0.054 0.946 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.047 0.953 39 H 0.084 0.916 40 H 0.338 0.662 41 H 0.037 0.963 42 H 0.083 0.917 43 H 0.096 0.904 44 H 0.085 0.915 45 H 0.063 0.937 46 H 0.107 0.893 47 H 0.080 0.920 48 H 0.053 0.947 49 H 0.075 0.925 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.361 -28.258 2.414 30.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.193 4.193 3 Si 0.822 3.178 4 H -0.179 1.179 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.692 4.692 8 H 0.101 0.899 9 S 0.074 5.926 10 C -0.273 4.273 11 C 0.317 3.683 12 O -0.446 6.446 13 N -0.342 5.342 14 C -0.026 4.026 15 C -0.168 4.168 16 C -0.145 4.145 17 C -0.111 4.111 18 H 0.074 0.926 19 C -0.055 4.055 20 N -0.337 5.337 21 C -0.052 4.052 22 C -0.139 4.139 23 H 0.103 0.897 24 C -0.180 4.180 25 C -0.039 4.039 26 O -0.326 6.326 27 C -0.030 4.030 28 C 0.005 3.995 29 H 0.080 0.920 30 H 0.123 0.877 31 H 0.124 0.876 32 H 0.108 0.892 33 H 0.102 0.898 34 H 0.121 0.879 35 H 0.072 0.928 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.065 0.935 39 H 0.102 0.898 40 H 0.157 0.843 41 H 0.055 0.945 42 H 0.101 0.899 43 H 0.115 0.885 44 H 0.104 0.896 45 H 0.082 0.918 46 H 0.125 0.875 47 H 0.098 0.902 48 H 0.071 0.929 49 H 0.093 0.907 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 8.314 -28.395 1.969 29.652 hybrid contribution 1.424 1.295 0.697 2.047 sum 9.739 -27.100 2.666 28.920 Atomic orbital electron populations 1.70196 1.08002 1.28552 1.48069 1.26157 0.95997 1.03385 0.93755 0.84886 0.78638 0.76211 0.78083 1.17907 1.19908 1.19918 1.23221 0.95318 0.91890 1.58761 0.89909 1.85608 1.10714 0.99314 1.97003 1.23360 1.03278 0.94566 1.06105 1.20135 0.86074 0.86704 0.75367 1.90674 1.17274 1.85794 1.50824 1.48176 1.07376 1.05686 1.72959 1.22069 0.77929 1.01985 1.00619 1.21896 1.01922 0.95568 0.97393 1.21525 0.93085 0.96175 1.03720 1.21476 0.96786 0.95177 0.97686 0.92579 1.21914 0.87049 0.94490 1.02047 1.60487 1.15107 1.16436 1.41710 1.21915 0.93240 0.88437 1.01611 1.22570 0.97105 0.97576 0.96655 0.89697 1.23156 0.99518 0.95220 1.00097 1.23766 0.96286 0.96093 0.87708 1.88843 1.75594 1.35553 1.32595 1.23282 0.98006 0.88778 0.92911 1.21581 0.99789 0.79418 0.98744 0.91995 0.87729 0.87619 0.89212 0.89777 0.87937 0.92760 0.90040 0.90058 0.93509 0.89812 0.84342 0.94521 0.89878 0.88526 0.89603 0.91847 0.87508 0.90168 0.92880 0.90723 0.91229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.71 13.22 21.65 0.29 -56.42 16 2 C 0.01 0.67 5.49 84.85 0.47 1.14 16 3 Si 1.00 43.95 29.55 68.60 2.03 45.98 16 4 H -0.26 -10.43 7.11 99.48 0.71 -9.73 16 5 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 6 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 7 C -0.54 -31.51 9.50 67.95 0.65 -30.86 16 8 H 0.08 4.45 7.80 -2.91 -0.02 4.42 16 9 S -0.15 -8.77 20.57 -56.49 -1.16 -9.93 16 10 C -0.12 -5.07 4.50 71.23 0.32 -4.75 16 11 C 0.53 21.05 7.72 87.66 0.68 21.73 16 12 O -0.57 -27.87 15.28 -3.05 -0.05 -27.91 16 13 N -0.61 -17.18 2.97 -818.85 -2.43 -19.61 16 14 C 0.10 1.87 6.34 86.36 0.55 2.42 16 15 C -0.13 -1.87 6.08 30.67 0.19 -1.68 16 16 C -0.11 -1.30 5.17 30.62 0.16 -1.14 16 17 C -0.09 -1.58 2.48 -10.70 -0.03 -1.60 16 18 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 19 C 0.07 1.01 5.08 86.30 0.44 1.45 16 20 N -0.71 -11.69 6.07 -513.90 -3.12 -14.81 16 21 C 0.08 1.02 4.89 86.30 0.42 1.44 16 22 C -0.12 -1.75 3.30 -9.80 -0.03 -1.78 16 23 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 24 C -0.14 -1.55 6.71 31.89 0.21 -1.34 16 25 C 0.04 0.51 7.72 72.66 0.56 1.07 16 26 O -0.41 -8.33 11.52 -148.98 -1.72 -10.04 16 27 C 0.05 0.85 6.93 72.36 0.50 1.35 16 28 C 0.13 3.09 5.54 86.38 0.48 3.57 16 29 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 30 H 0.10 3.96 7.70 -2.39 -0.02 3.94 16 31 H 0.11 3.99 7.94 -2.40 -0.02 3.97 16 32 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.08 1.73 5.93 -2.39 -0.01 1.72 16 34 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 39 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.34 6.02 7.37 -89.69 -0.66 5.36 16 41 H 0.04 0.46 8.14 -2.39 -0.02 0.44 16 42 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.10 0.80 8.14 -2.38 -0.02 0.78 16 44 H 0.09 0.81 7.87 -2.38 -0.02 0.79 16 45 H 0.06 0.81 8.14 -2.39 -0.02 0.80 16 46 H 0.11 1.07 8.14 -2.39 -0.02 1.06 16 47 H 0.08 1.38 6.82 -2.39 -0.02 1.36 16 48 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 49 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 50 H 0.07 2.21 6.79 -2.39 -0.02 2.20 16 Total: -1.00 -78.95 404.74 -0.35 -79.30 By element: Atomic # 1 Polarization: 22.20 SS G_CDS: 0.25 Total: 22.45 kcal Atomic # 6 Polarization: -14.56 SS G_CDS: 5.56 Total: -9.00 kcal Atomic # 7 Polarization: -85.57 SS G_CDS: -5.27 Total: -90.84 kcal Atomic # 8 Polarization: -36.20 SS G_CDS: -1.76 Total: -37.96 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Atomic # 16 Polarization: -8.77 SS G_CDS: -1.16 Total: -9.93 kcal Total: -78.95 -0.35 -79.30 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661761812.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.677 kcal (2) G-P(sol) polarization free energy of solvation -78.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds