Wall clock time and date at job start Wed Apr 1 2020 01:31:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86798 * 120.00011 * 2 1 4 4 H 1.48502 * 109.47224 * 270.00105 * 3 2 1 5 5 H 1.48503 * 109.46997 * 30.00207 * 3 2 1 6 6 H 1.48508 * 109.47357 * 150.00014 * 3 2 1 7 7 C 1.38806 * 120.00336 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99955 * 179.97438 * 7 2 1 9 9 S 1.76198 * 119.99439 * 359.97438 * 7 2 1 10 10 C 1.81001 * 99.99785 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47268 * 179.97438 * 10 9 7 12 12 O 1.21278 * 119.99829 * 0.02562 * 11 10 9 13 13 N 1.34770 * 119.99884 * 180.02562 * 11 10 9 14 14 C 1.46503 * 120.00180 * 180.02562 * 13 11 10 15 15 C 1.52994 * 109.47612 * 179.97438 * 14 13 11 16 16 N 1.46896 * 109.47475 * 184.66310 * 15 14 13 17 17 C 1.46899 * 111.00449 * 195.65298 * 16 15 14 18 18 C 1.53009 * 109.46665 * 75.58364 * 17 16 15 19 19 C 1.53175 * 109.54398 * 65.98891 * 18 17 16 20 20 C 1.53276 * 109.06358 * 176.85025 * 19 18 17 21 21 O 1.42905 * 109.46310 * 302.44811 * 20 19 18 22 22 C 1.42900 * 114.09872 * 61.15231 * 21 20 19 23 23 C 1.53085 * 109.41824 * 298.84923 * 22 21 20 24 24 C 1.46903 * 110.99975 * 71.70161 * 16 15 14 25 25 C 1.53009 * 117.50070 * 249.92721 * 24 16 15 26 26 C 1.52998 * 117.50117 * 181.26911 * 24 16 15 27 27 H 0.97003 * 120.00185 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.47196 * 60.00169 * 10 9 7 29 29 H 1.08996 * 109.47373 * 300.00633 * 10 9 7 30 30 H 0.97006 * 120.00269 * 359.97438 * 13 11 10 31 31 H 1.09003 * 109.46769 * 59.99580 * 14 13 11 32 32 H 1.08996 * 109.47249 * 300.00381 * 14 13 11 33 33 H 1.09002 * 109.47204 * 64.66168 * 15 14 13 34 34 H 1.08998 * 109.47171 * 304.66746 * 15 14 13 35 35 H 1.08994 * 109.47048 * 315.58756 * 17 16 15 36 36 H 1.08993 * 109.47317 * 195.57932 * 17 16 15 37 37 H 1.08998 * 109.54207 * 305.81370 * 18 17 16 38 38 H 1.09002 * 109.52361 * 296.84216 * 19 18 17 39 39 H 1.09005 * 109.51975 * 57.02693 * 19 18 17 40 40 H 1.08999 * 109.46023 * 182.44873 * 20 19 18 41 41 H 1.09000 * 109.46572 * 62.44931 * 20 19 18 42 42 H 1.08997 * 109.48364 * 178.85827 * 22 21 20 43 43 H 1.09006 * 109.48596 * 58.83701 * 22 21 20 44 44 H 1.09008 * 109.52072 * 297.69651 * 23 22 21 45 45 H 1.08997 * 109.57742 * 177.54241 * 23 22 21 46 46 H 1.08996 * 115.54959 * 35.59510 * 24 16 15 47 47 H 1.08999 * 117.49541 * 0.02562 * 25 24 16 48 48 H 1.09001 * 117.49786 * 145.01822 * 25 24 16 49 49 H 1.09004 * 117.49981 * 214.98330 * 26 24 16 50 50 H 1.09003 * 117.49499 * 359.97308 * 26 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5479 1.4402 0.7001 7 6 2.0104 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7279 -0.0005 10 6 2.5159 -3.8914 -0.0021 11 6 1.9874 -5.3027 -0.0017 12 8 0.7912 -5.5023 -0.0009 13 7 2.8442 -6.3430 -0.0022 14 6 2.3305 -7.7151 -0.0024 15 6 3.5025 -8.6985 -0.0036 16 7 2.9903 -10.0707 -0.1164 17 6 4.0234 -11.0498 0.2467 18 6 4.1910 -11.0741 1.7674 19 6 2.9108 -11.6099 2.4156 20 6 3.1185 -11.7038 3.9313 21 8 4.2411 -12.5440 4.2069 22 6 5.4740 -12.0672 3.6641 23 6 5.3621 -11.9887 2.1393 24 6 2.4709 -10.3295 -1.4659 25 6 0.9571 -10.4882 -1.6219 26 6 1.8713 -11.7102 -1.7394 27 1 -0.4850 0.8401 0.0004 28 1 3.1252 -3.7317 0.8875 29 1 3.1238 -3.7309 -0.8924 30 1 3.8010 -6.1834 -0.0032 31 1 1.7216 -7.8749 -0.8922 32 1 1.7222 -7.8754 0.8877 33 1 4.0642 -8.5955 0.9248 34 1 4.1560 -8.4840 -0.8492 35 1 4.9686 -10.7702 -0.2185 36 1 3.7254 -12.0386 -0.1017 37 1 4.3877 -10.0647 2.1287 38 1 2.0831 -10.9340 2.2003 39 1 2.6873 -12.5994 2.0168 40 1 2.2265 -12.1253 4.3946 41 1 3.3018 -10.7081 4.3352 42 1 6.2788 -12.7505 3.9349 43 1 5.6884 -11.0763 4.0643 44 1 5.1881 -12.9860 1.7350 45 1 6.2858 -11.5842 1.7257 46 1 3.0127 -9.8460 -2.2788 47 1 0.3466 -10.4001 -0.7232 48 1 0.5031 -10.1095 -2.5377 49 1 2.0184 -12.1351 -2.7324 50 1 1.8627 -12.4268 -0.9180 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663704988.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:31:08 Heat of formation + Delta-G solvation = -64.433056 kcal Electronic energy + Delta-G solvation = -27401.423726 eV Core-core repulsion = 23555.275738 eV Total energy + Delta-G solvation = -3846.147988 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.176 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.08242 -39.21729 -38.55929 -35.63930 -34.87141 -33.05226 -32.42873 -31.40904 -30.20780 -28.30346 -26.43885 -25.46493 -23.89689 -23.17401 -22.89856 -22.34084 -20.69167 -20.39914 -19.99964 -17.86437 -16.82834 -16.47710 -16.40285 -16.24444 -15.93567 -15.84910 -15.13964 -15.09657 -14.98287 -14.80566 -14.64826 -13.93220 -13.89375 -13.58444 -13.33755 -13.06876 -12.92433 -12.69384 -12.54157 -12.38943 -12.17881 -11.75023 -11.68142 -11.65573 -11.55140 -11.15957 -11.06555 -11.02531 -10.90062 -10.76499 -10.65691 -10.61806 -10.44808 -9.82331 -9.81083 -9.39818 -9.07082 -8.85556 -8.69545 -8.23240 -6.49798 -6.21643 -3.92108 2.91726 3.12327 3.21931 3.22599 3.29233 3.40865 3.50664 3.56294 3.85662 4.20389 4.27975 4.41107 4.46366 4.60481 4.65222 4.68110 4.76304 4.78030 4.86673 4.95665 4.98911 5.07176 5.13402 5.14294 5.20105 5.23074 5.28092 5.33909 5.36934 5.38658 5.46609 5.51074 5.54528 5.63680 5.72594 5.74253 5.80880 5.88378 5.91273 5.93936 5.99369 6.02150 6.13814 6.55618 6.66483 6.78790 6.87121 7.59425 7.71380 8.35124 8.63417 9.23570 10.85756 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.014945 B = 0.001949 C = 0.001817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.132221 B =14360.754646 C =15410.167165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.072 0.928 9 S -0.060 6.060 10 C -0.153 4.153 11 C 0.532 3.468 12 O -0.516 6.516 13 N -0.741 5.741 14 C 0.128 3.872 15 C 0.048 3.952 16 N -0.504 5.504 17 C 0.063 3.937 18 C -0.086 4.086 19 C -0.140 4.140 20 C 0.057 3.943 21 O -0.386 6.386 22 C 0.062 3.938 23 C -0.151 4.151 24 C 0.002 3.998 25 C -0.158 4.158 26 C -0.176 4.176 27 H 0.268 0.732 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.396 0.604 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.042 0.958 35 H 0.037 0.963 36 H 0.079 0.921 37 H 0.073 0.927 38 H 0.086 0.914 39 H 0.066 0.934 40 H 0.092 0.908 41 H 0.050 0.950 42 H 0.091 0.909 43 H 0.049 0.951 44 H 0.071 0.929 45 H 0.071 0.929 46 H 0.090 0.910 47 H 0.103 0.897 48 H 0.095 0.905 49 H 0.093 0.907 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.141 -27.731 1.356 30.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.090 0.910 9 S 0.167 5.833 10 C -0.304 4.304 11 C 0.318 3.682 12 O -0.390 6.390 13 N -0.396 5.396 14 C 0.004 3.996 15 C -0.080 4.080 16 N -0.228 5.228 17 C -0.064 4.064 18 C -0.105 4.105 19 C -0.177 4.177 20 C -0.020 4.020 21 O -0.305 6.305 22 C -0.015 4.015 23 C -0.189 4.189 24 C -0.106 4.106 25 C -0.196 4.196 26 C -0.213 4.213 27 H 0.078 0.922 28 H 0.107 0.893 29 H 0.107 0.893 30 H 0.229 0.771 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.099 0.901 34 H 0.060 0.940 35 H 0.055 0.945 36 H 0.097 0.903 37 H 0.091 0.909 38 H 0.105 0.895 39 H 0.084 0.916 40 H 0.111 0.889 41 H 0.068 0.932 42 H 0.110 0.890 43 H 0.068 0.932 44 H 0.090 0.910 45 H 0.090 0.910 46 H 0.108 0.892 47 H 0.121 0.879 48 H 0.113 0.887 49 H 0.112 0.888 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 9.555 -28.187 1.798 29.817 hybrid contribution 3.190 1.756 -0.826 3.734 sum 12.746 -26.432 0.972 29.360 Atomic orbital electron populations 1.70017 1.05945 1.27449 1.46846 1.24997 0.95034 0.99032 0.94565 0.86168 0.79404 0.81583 0.78334 1.20283 1.20742 1.19713 1.22865 0.94894 0.91674 1.58939 0.90953 1.85408 1.04936 0.96292 1.96708 1.23529 1.06548 0.95443 1.04854 1.20269 0.86514 0.86187 0.75221 1.90706 1.15334 1.85571 1.47340 1.45942 1.09844 1.05644 1.78138 1.21116 0.95645 0.79793 1.03087 1.22294 0.96244 0.87934 1.01540 1.61550 1.35378 1.01997 1.23883 1.22152 0.92934 0.96245 0.95063 1.21218 0.95047 0.99370 0.94829 1.22148 0.98370 1.02122 0.95091 1.22685 0.89130 0.94645 0.95501 1.87926 1.16428 1.49857 1.76264 1.22532 0.86873 0.99664 0.92444 1.22220 0.98734 1.00807 0.97159 1.22481 0.96845 1.00931 0.90378 1.23107 0.92341 1.00587 1.03570 1.23076 1.04651 0.91006 1.02614 0.92181 0.89268 0.89306 0.77098 0.91378 0.91066 0.90123 0.93994 0.94474 0.90295 0.90894 0.89529 0.91555 0.88946 0.93208 0.89038 0.93239 0.91003 0.91021 0.89242 0.87895 0.88656 0.88818 0.88401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.20 13.22 55.49 0.73 -25.47 16 2 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.40 29.55 -169.99 -5.02 16.38 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.54 -15.27 9.50 30.94 0.29 -14.97 16 8 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 9 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 10 C -0.15 -3.08 6.16 36.01 0.22 -2.86 16 11 C 0.53 9.96 7.85 -10.99 -0.09 9.87 16 12 O -0.52 -11.83 15.86 5.56 0.09 -11.74 16 13 N -0.74 -9.79 5.56 -60.30 -0.33 -10.12 16 14 C 0.13 1.51 5.81 -4.04 -0.02 1.49 16 15 C 0.05 0.40 4.90 -3.83 -0.02 0.38 16 16 N -0.50 -3.97 4.10 -226.65 -0.93 -4.90 16 17 C 0.06 0.42 4.32 -3.82 -0.02 0.40 16 18 C -0.09 -0.56 2.31 -90.43 -0.21 -0.77 16 19 C -0.14 -1.02 5.30 -26.50 -0.14 -1.16 16 20 C 0.06 0.44 6.85 37.30 0.26 0.70 16 21 O -0.39 -3.51 10.77 -35.23 -0.38 -3.89 16 22 C 0.06 0.41 6.84 37.20 0.25 0.67 16 23 C -0.15 -0.88 5.42 -26.60 -0.14 -1.02 16 24 C 0.00 0.02 4.42 -67.71 -0.30 -0.28 16 25 C -0.16 -1.33 10.21 -26.69 -0.27 -1.60 16 26 C -0.18 -1.22 9.52 -26.70 -0.25 -1.47 16 27 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 28 H 0.09 1.65 8.14 -51.91 -0.42 1.23 16 29 H 0.09 1.65 8.14 -51.92 -0.42 1.22 16 30 H 0.40 3.99 8.47 -40.82 -0.35 3.64 16 31 H 0.07 0.90 7.23 -51.93 -0.38 0.53 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.08 0.62 6.47 -51.93 -0.34 0.28 16 34 H 0.04 0.33 7.94 -51.93 -0.41 -0.08 16 35 H 0.04 0.24 8.00 -51.93 -0.42 -0.17 16 36 H 0.08 0.52 6.47 -51.93 -0.34 0.18 16 37 H 0.07 0.53 6.62 -51.93 -0.34 0.18 16 38 H 0.09 0.71 7.88 -51.93 -0.41 0.30 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.07 0.43 8.14 -51.92 -0.42 0.01 16 45 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 46 H 0.09 0.74 7.96 -51.93 -0.41 0.32 16 47 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 48 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 49 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 50 H 0.10 0.67 7.43 -51.93 -0.39 0.28 16 LS Contribution 412.30 15.07 6.21 6.21 Total: -1.00 -34.19 412.30 -11.19 -45.39 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -8.81 Total: 0.63 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: -0.54 Total: -8.64 kcal Atomic # 7 Polarization: -39.96 SS G_CDS: -0.53 Total: -40.49 kcal Atomic # 8 Polarization: -15.34 SS G_CDS: -0.29 Total: -15.63 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -34.19 -11.19 -45.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663704988.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.047 kcal (2) G-P(sol) polarization free energy of solvation -34.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds