Wall clock time and date at job start Wed Apr 1 2020 01:31:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86798 * 120.00011 * 2 1 4 4 H 1.48502 * 109.47224 * 270.00105 * 3 2 1 5 5 H 1.48503 * 109.46997 * 30.00207 * 3 2 1 6 6 H 1.48508 * 109.47357 * 150.00014 * 3 2 1 7 7 C 1.38806 * 120.00336 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99955 * 179.97438 * 7 2 1 9 9 S 1.76198 * 119.99439 * 359.97438 * 7 2 1 10 10 C 1.81001 * 99.99785 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47268 * 179.97438 * 10 9 7 12 12 O 1.21278 * 119.99829 * 0.02562 * 11 10 9 13 13 N 1.34770 * 119.99884 * 180.02562 * 11 10 9 14 14 C 1.46503 * 120.00180 * 180.02562 * 13 11 10 15 15 C 1.52994 * 109.47612 * 179.97438 * 14 13 11 16 16 N 1.46896 * 109.47475 * 184.66310 * 15 14 13 17 17 C 1.46899 * 111.00449 * 195.65298 * 16 15 14 18 18 C 1.53009 * 109.46665 * 75.58364 * 17 16 15 19 19 C 1.53175 * 109.54398 * 65.98891 * 18 17 16 20 20 C 1.53276 * 109.06358 * 176.85025 * 19 18 17 21 21 O 1.42905 * 109.46310 * 302.44811 * 20 19 18 22 22 C 1.42900 * 114.09872 * 61.15231 * 21 20 19 23 23 C 1.53085 * 109.41824 * 298.84923 * 22 21 20 24 24 C 1.46903 * 110.99975 * 71.70161 * 16 15 14 25 25 C 1.53009 * 117.50070 * 249.92721 * 24 16 15 26 26 C 1.52998 * 117.50117 * 181.26911 * 24 16 15 27 27 H 0.97003 * 120.00185 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.47196 * 60.00169 * 10 9 7 29 29 H 1.08996 * 109.47373 * 300.00633 * 10 9 7 30 30 H 0.97006 * 120.00269 * 359.97438 * 13 11 10 31 31 H 1.09003 * 109.46769 * 59.99580 * 14 13 11 32 32 H 1.08996 * 109.47249 * 300.00381 * 14 13 11 33 33 H 1.09002 * 109.47204 * 64.66168 * 15 14 13 34 34 H 1.08998 * 109.47171 * 304.66746 * 15 14 13 35 35 H 1.08994 * 109.47048 * 315.58756 * 17 16 15 36 36 H 1.08993 * 109.47317 * 195.57932 * 17 16 15 37 37 H 1.08998 * 109.54207 * 305.81370 * 18 17 16 38 38 H 1.09002 * 109.52361 * 296.84216 * 19 18 17 39 39 H 1.09005 * 109.51975 * 57.02693 * 19 18 17 40 40 H 1.08999 * 109.46023 * 182.44873 * 20 19 18 41 41 H 1.09000 * 109.46572 * 62.44931 * 20 19 18 42 42 H 1.08997 * 109.48364 * 178.85827 * 22 21 20 43 43 H 1.09006 * 109.48596 * 58.83701 * 22 21 20 44 44 H 1.09008 * 109.52072 * 297.69651 * 23 22 21 45 45 H 1.08997 * 109.57742 * 177.54241 * 23 22 21 46 46 H 1.08996 * 115.54959 * 35.59510 * 24 16 15 47 47 H 1.08999 * 117.49541 * 0.02562 * 25 24 16 48 48 H 1.09001 * 117.49786 * 145.01822 * 25 24 16 49 49 H 1.09004 * 117.49981 * 214.98330 * 26 24 16 50 50 H 1.09003 * 117.49499 * 359.97308 * 26 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5479 1.4402 0.7001 7 6 2.0104 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7279 -0.0005 10 6 2.5159 -3.8914 -0.0021 11 6 1.9874 -5.3027 -0.0017 12 8 0.7912 -5.5023 -0.0009 13 7 2.8442 -6.3430 -0.0022 14 6 2.3305 -7.7151 -0.0024 15 6 3.5025 -8.6985 -0.0036 16 7 2.9903 -10.0707 -0.1164 17 6 4.0234 -11.0498 0.2467 18 6 4.1910 -11.0741 1.7674 19 6 2.9108 -11.6099 2.4156 20 6 3.1185 -11.7038 3.9313 21 8 4.2411 -12.5440 4.2069 22 6 5.4740 -12.0672 3.6641 23 6 5.3621 -11.9887 2.1393 24 6 2.4709 -10.3295 -1.4659 25 6 0.9571 -10.4882 -1.6219 26 6 1.8713 -11.7102 -1.7394 27 1 -0.4850 0.8401 0.0004 28 1 3.1252 -3.7317 0.8875 29 1 3.1238 -3.7309 -0.8924 30 1 3.8010 -6.1834 -0.0032 31 1 1.7216 -7.8749 -0.8922 32 1 1.7222 -7.8754 0.8877 33 1 4.0642 -8.5955 0.9248 34 1 4.1560 -8.4840 -0.8492 35 1 4.9686 -10.7702 -0.2185 36 1 3.7254 -12.0386 -0.1017 37 1 4.3877 -10.0647 2.1287 38 1 2.0831 -10.9340 2.2003 39 1 2.6873 -12.5994 2.0168 40 1 2.2265 -12.1253 4.3946 41 1 3.3018 -10.7081 4.3352 42 1 6.2788 -12.7505 3.9349 43 1 5.6884 -11.0763 4.0643 44 1 5.1881 -12.9860 1.7350 45 1 6.2858 -11.5842 1.7257 46 1 3.0127 -9.8460 -2.2788 47 1 0.3466 -10.4001 -0.7232 48 1 0.5031 -10.1095 -2.5377 49 1 2.0184 -12.1351 -2.7324 50 1 1.8627 -12.4268 -0.9180 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663704988.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:31:05 Heat of formation + Delta-G solvation = -87.841560 kcal Electronic energy + Delta-G solvation = -27402.438795 eV Core-core repulsion = 23555.275738 eV Total energy + Delta-G solvation = -3847.163057 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.176 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.81658 -40.41841 -39.31082 -36.41045 -35.85305 -34.58394 -33.87162 -31.94881 -31.51997 -29.36024 -27.68911 -27.10577 -24.43941 -23.89342 -23.64537 -22.95618 -21.85323 -21.16132 -20.70117 -19.82076 -17.91246 -17.45681 -17.22913 -16.94149 -16.88367 -16.85311 -16.80661 -16.25403 -15.94198 -15.69987 -15.52387 -15.22789 -14.88764 -14.71814 -14.45043 -14.18832 -13.83289 -13.70325 -13.49229 -13.20012 -13.16476 -12.95434 -12.88838 -12.63769 -12.56645 -12.44709 -12.33575 -12.19532 -11.73839 -11.70967 -11.44045 -11.29307 -11.20281 -11.14198 -11.06040 -10.95167 -10.39981 -10.27249 -10.11643 -9.30001 -8.66807 -8.34473 -6.12662 1.26603 1.42664 1.46886 1.57232 1.61779 2.15798 2.27737 2.80764 2.91810 2.99609 3.02133 3.33489 3.72091 3.84020 3.88786 3.97887 4.00014 4.01836 4.08724 4.11529 4.14346 4.30432 4.30713 4.38452 4.43943 4.45996 4.50996 4.56274 4.61479 4.72454 4.78207 4.82036 4.85763 4.89883 4.93004 4.96263 5.00620 5.04423 5.11544 5.21745 5.30899 5.31259 5.41069 5.42141 5.46400 6.03277 6.13661 6.19999 6.31045 6.50625 7.06709 7.25117 8.74732 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.014945 B = 0.001949 C = 0.001817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.132221 B =14360.754646 C =15410.167165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.012 3.988 3 Si 0.999 3.001 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.257 1.257 7 C -0.545 4.545 8 H 0.084 0.916 9 S -0.154 6.154 10 C -0.128 4.128 11 C 0.534 3.466 12 O -0.566 6.566 13 N -0.712 5.712 14 C 0.133 3.867 15 C 0.059 3.941 16 N -0.512 5.512 17 C 0.069 3.931 18 C -0.083 4.083 19 C -0.133 4.133 20 C 0.055 3.945 21 O -0.407 6.407 22 C 0.055 3.945 23 C -0.144 4.144 24 C -0.001 4.001 25 C -0.175 4.175 26 C -0.158 4.158 27 H 0.271 0.729 28 H 0.111 0.889 29 H 0.111 0.889 30 H 0.416 0.584 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.094 0.906 34 H 0.056 0.944 35 H 0.047 0.953 36 H 0.082 0.918 37 H 0.069 0.931 38 H 0.074 0.926 39 H 0.063 0.937 40 H 0.094 0.906 41 H 0.048 0.952 42 H 0.103 0.897 43 H 0.052 0.948 44 H 0.071 0.929 45 H 0.087 0.913 46 H 0.092 0.908 47 H 0.087 0.913 48 H 0.092 0.908 49 H 0.107 0.893 50 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.459 -28.297 1.028 32.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.193 4.193 3 Si 0.821 3.179 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.181 1.181 7 C -0.693 4.693 8 H 0.102 0.898 9 S 0.073 5.927 10 C -0.279 4.279 11 C 0.319 3.681 12 O -0.444 6.444 13 N -0.367 5.367 14 C 0.008 3.992 15 C -0.069 4.069 16 N -0.236 5.236 17 C -0.058 4.058 18 C -0.101 4.101 19 C -0.171 4.171 20 C -0.021 4.021 21 O -0.326 6.326 22 C -0.022 4.022 23 C -0.182 4.182 24 C -0.110 4.110 25 C -0.213 4.213 26 C -0.195 4.195 27 H 0.080 0.920 28 H 0.129 0.871 29 H 0.129 0.871 30 H 0.253 0.747 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.112 0.888 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.100 0.900 37 H 0.088 0.912 38 H 0.093 0.907 39 H 0.082 0.918 40 H 0.112 0.888 41 H 0.067 0.933 42 H 0.121 0.879 43 H 0.070 0.930 44 H 0.089 0.911 45 H 0.106 0.894 46 H 0.109 0.891 47 H 0.106 0.894 48 H 0.111 0.889 49 H 0.125 0.875 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 12.938 -28.795 1.469 31.603 hybrid contribution 2.180 1.785 -0.705 2.904 sum 15.118 -27.010 0.764 30.962 Atomic orbital electron populations 1.70186 1.07995 1.28600 1.48018 1.26149 0.95983 1.03382 0.93781 0.84942 0.78201 0.75969 0.78789 1.19304 1.20358 1.18128 1.23200 0.95352 0.91932 1.58815 0.89833 1.85615 1.10675 0.99318 1.97053 1.23363 1.03497 0.94218 1.06868 1.20063 0.86205 0.86681 0.75134 1.90698 1.17518 1.86109 1.50079 1.45638 1.10319 1.05105 1.75624 1.21138 0.96987 0.79470 1.01574 1.22169 0.94603 0.87304 1.02840 1.61477 1.36163 1.01990 1.23969 1.22135 0.92850 0.95899 0.94934 1.21192 0.94883 0.99314 0.94752 1.22058 0.98520 1.01664 0.94877 1.22718 0.89109 0.94473 0.95839 1.87898 1.17367 1.50538 1.76820 1.22715 0.86275 1.00114 0.93061 1.22168 0.98978 1.00619 0.96477 1.22521 0.96178 1.01790 0.90467 1.23067 0.92812 1.02570 1.02864 1.23098 1.02650 0.90341 1.03409 0.92010 0.87107 0.87126 0.74687 0.92854 0.92763 0.88753 0.92623 0.93449 0.89986 0.91219 0.90720 0.91824 0.88775 0.93338 0.87868 0.93003 0.91076 0.89430 0.89057 0.89429 0.88908 0.87462 0.88139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.16 13.22 21.65 0.29 -55.88 16 2 C 0.01 0.67 5.49 84.86 0.47 1.13 16 3 Si 1.00 43.47 29.55 68.60 2.03 45.50 16 4 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 5 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 6 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 7 C -0.55 -31.07 9.50 67.96 0.65 -30.42 16 8 H 0.08 4.40 7.80 -2.91 -0.02 4.37 16 9 S -0.15 -8.56 20.57 -56.49 -1.16 -9.73 16 10 C -0.13 -5.02 6.16 71.24 0.44 -4.59 16 11 C 0.53 19.68 7.85 87.66 0.69 20.36 16 12 O -0.57 -26.64 15.86 -3.02 -0.05 -26.69 16 13 N -0.71 -17.54 5.56 -463.07 -2.57 -20.12 16 14 C 0.13 3.01 5.81 86.38 0.50 3.51 16 15 C 0.06 0.85 4.90 86.30 0.42 1.27 16 16 N -0.51 -7.19 4.10 -870.99 -3.57 -10.77 16 17 C 0.07 0.74 4.32 86.31 0.37 1.11 16 18 C -0.08 -0.92 2.31 -10.67 -0.02 -0.94 16 19 C -0.13 -1.83 5.30 30.75 0.16 -1.67 16 20 C 0.06 0.82 6.85 72.07 0.49 1.32 16 21 O -0.41 -7.04 10.77 -148.98 -1.60 -8.64 16 22 C 0.05 0.64 6.84 72.01 0.49 1.13 16 23 C -0.14 -1.34 5.42 30.68 0.17 -1.17 16 24 C 0.00 -0.01 4.42 44.92 0.20 0.18 16 25 C -0.18 -2.93 10.21 30.62 0.31 -2.62 16 26 C -0.16 -1.95 9.52 30.62 0.29 -1.66 16 27 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 28 H 0.11 3.87 8.14 -2.39 -0.02 3.85 16 29 H 0.11 3.86 8.14 -2.40 -0.02 3.84 16 30 H 0.42 7.02 8.47 -92.70 -0.79 6.24 16 31 H 0.05 1.41 7.23 -2.39 -0.02 1.39 16 32 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.09 1.15 6.47 -2.39 -0.02 1.13 16 34 H 0.06 0.69 7.94 -2.39 -0.02 0.67 16 35 H 0.05 0.44 8.00 -2.39 -0.02 0.43 16 36 H 0.08 0.87 6.47 -2.39 -0.02 0.85 16 37 H 0.07 0.84 6.62 -2.39 -0.02 0.83 16 38 H 0.07 1.21 7.88 -2.39 -0.02 1.19 16 39 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 40 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.05 0.57 8.14 -2.38 -0.02 0.55 16 44 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 45 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 46 H 0.09 1.33 7.96 -2.39 -0.02 1.31 16 47 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 48 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 49 H 0.11 1.05 8.14 -2.38 -0.02 1.03 16 50 H 0.10 1.20 7.43 -2.39 -0.02 1.19 16 Total: -1.00 -76.56 412.30 -0.89 -77.45 By element: Atomic # 1 Polarization: 21.78 SS G_CDS: 0.13 Total: 21.91 kcal Atomic # 6 Polarization: -18.67 SS G_CDS: 5.63 Total: -13.04 kcal Atomic # 7 Polarization: -80.90 SS G_CDS: -5.86 Total: -86.76 kcal Atomic # 8 Polarization: -33.68 SS G_CDS: -1.65 Total: -35.33 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Atomic # 16 Polarization: -8.56 SS G_CDS: -1.16 Total: -9.73 kcal Total: -76.56 -0.89 -77.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663704988.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.393 kcal (2) G-P(sol) polarization free energy of solvation -76.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds