Wall clock time and date at job start Wed Apr 1 2020 02:32:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86794 * 119.99901 * 2 1 4 4 H 1.48496 * 109.47143 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47014 * 299.99639 * 3 2 1 6 6 H 1.48501 * 109.47523 * 59.99743 * 3 2 1 7 7 C 1.38793 * 119.99749 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00062 * 180.02562 * 7 2 1 9 9 S 1.76198 * 120.00360 * 359.97438 * 7 2 1 10 10 C 1.81001 * 100.00253 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47288 * 180.02562 * 10 9 7 12 12 O 1.21278 * 119.99641 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99985 * 180.02562 * 11 10 9 14 14 C 1.47422 * 125.64981 * 355.09904 * 13 11 10 15 15 C 1.54912 * 104.93232 * 155.79672 * 14 13 11 16 16 C 1.55443 * 101.44900 * 37.00367 * 15 14 13 17 17 C 1.47025 * 125.64892 * 175.07280 * 13 11 10 18 18 H 1.08994 * 109.87845 * 300.50053 * 17 13 11 19 19 C 1.53001 * 109.87876 * 61.50814 * 17 13 11 20 20 N 1.46898 * 109.46850 * 184.51839 * 19 17 13 21 21 C 1.46905 * 110.99941 * 185.03504 * 20 19 17 22 22 C 1.53000 * 109.46986 * 180.02562 * 21 20 19 23 23 C 1.53001 * 109.46827 * 180.02562 * 22 21 20 24 24 H 1.09004 * 109.82223 * 305.55794 * 23 22 21 25 25 C 1.54381 * 109.82792 * 184.58721 * 23 22 21 26 26 C 1.55309 * 102.25184 * 219.12652 * 25 23 22 27 27 C 1.54938 * 100.93967 * 34.13237 * 26 25 23 28 28 O 1.43231 * 109.83170 * 66.45291 * 23 22 21 29 29 H 0.97000 * 120.00382 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.47032 * 59.99722 * 10 9 7 31 31 H 1.09000 * 109.46983 * 300.00126 * 10 9 7 32 32 H 1.09001 * 110.36438 * 274.69177 * 14 13 11 33 33 H 1.09001 * 110.37057 * 36.89765 * 14 13 11 34 34 H 1.08999 * 111.00180 * 155.13778 * 15 14 13 35 35 H 1.09000 * 110.99927 * 278.99165 * 15 14 13 36 36 H 1.08997 * 110.70651 * 206.14798 * 16 15 14 37 37 H 1.09003 * 110.86162 * 82.95758 * 16 15 14 38 38 H 1.09003 * 109.47229 * 304.52015 * 19 17 13 39 39 H 1.09006 * 109.47178 * 64.52064 * 19 17 13 40 40 H 1.00907 * 110.99962 * 61.08798 * 20 19 17 41 41 H 1.09001 * 109.47100 * 300.00455 * 21 20 19 42 42 H 1.09001 * 109.46766 * 60.00033 * 21 20 19 43 43 H 1.09001 * 109.47362 * 300.00037 * 22 21 20 44 44 H 1.09001 * 109.47552 * 60.00256 * 22 21 20 45 45 H 1.08998 * 110.85008 * 337.31890 * 25 23 22 46 46 H 1.09004 * 110.85222 * 100.93721 * 25 23 22 47 47 H 1.08998 * 111.12426 * 276.21551 * 26 25 23 48 48 H 1.09005 * 111.15920 * 152.06988 * 26 25 23 49 49 H 1.08997 * 110.31214 * 204.63747 * 27 26 25 50 50 H 1.09001 * 110.31217 * 82.47302 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8915 2.3965 1.2124 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1293 -2.7280 0.0019 10 6 2.5158 -3.8914 0.0029 11 6 1.9873 -5.3028 0.0036 12 8 0.7911 -5.5023 0.0038 13 7 2.8441 -6.3431 0.0049 14 6 4.3117 -6.2477 -0.0965 15 6 4.8424 -7.5484 0.5565 16 6 3.7767 -8.5820 0.0956 17 6 2.4699 -7.7612 0.1083 18 1 1.9316 -7.9355 1.0398 19 6 1.5923 -8.1557 -1.0813 20 7 1.1350 -9.5417 -0.9140 21 6 0.3877 -9.9956 -2.0946 22 6 -0.0715 -11.4396 -1.8832 23 6 -0.8493 -11.9125 -3.1130 24 1 -1.6635 -11.2194 -3.3245 25 6 -1.4150 -13.3270 -2.8628 26 6 -1.2156 -14.0106 -4.2430 27 6 0.1028 -13.3460 -4.7126 28 8 0.0281 -11.9908 -4.2424 29 1 -0.4851 0.8400 -0.0004 30 1 3.1244 -3.7305 0.8928 31 1 3.1244 -3.7321 -0.8872 32 1 4.6172 -6.1959 -1.1415 33 1 4.6737 -5.3752 0.4474 34 1 5.8296 -7.8041 0.1717 35 1 4.8585 -7.4617 1.6429 36 1 3.7168 -9.4132 0.7982 37 1 3.9955 -8.9432 -0.9093 38 1 0.7292 -7.4919 -1.1320 39 1 2.1695 -8.0722 -2.0022 40 1 0.5822 -9.6414 -0.0758 41 1 -0.4824 -9.3558 -2.2419 42 1 1.0302 -9.9432 -2.9735 43 1 0.7983 -12.0797 -1.7356 44 1 -0.7142 -11.4917 -1.0043 45 1 -0.8450 -13.8415 -2.0891 46 1 -2.4723 -13.2815 -2.6016 47 1 -2.0369 -13.7755 -4.9201 48 1 -1.0954 -15.0886 -4.1345 49 1 0.1701 -13.3659 -5.8003 50 1 0.9605 -13.8531 -4.2705 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699743473.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:32:41 Heat of formation + Delta-G solvation = -90.979722 kcal Electronic energy + Delta-G solvation = -27153.743278 eV Core-core repulsion = 23306.444140 eV Total energy + Delta-G solvation = -3847.299137 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.176 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.00161 -39.82422 -37.32884 -36.19422 -32.86566 -32.42302 -32.36494 -31.60565 -30.00393 -28.55603 -27.18236 -25.48897 -24.59811 -22.99839 -22.43098 -21.78411 -21.16649 -20.90294 -18.91076 -17.65386 -17.36405 -16.81275 -16.40985 -16.28026 -15.61707 -15.03544 -14.91108 -14.79935 -14.52009 -14.32530 -14.12018 -13.99002 -13.72427 -13.51077 -13.31406 -13.11698 -12.82395 -12.53679 -12.34861 -12.19059 -12.08764 -11.95100 -11.77232 -11.54472 -11.38512 -11.26215 -11.24350 -11.06658 -11.00512 -10.96257 -10.77588 -10.73936 -10.72324 -9.83034 -9.79378 -9.36936 -9.06731 -8.55743 -8.37527 -8.21556 -6.49145 -6.21108 -3.91451 2.91496 3.08213 3.22011 3.26560 3.31672 3.47653 3.60551 4.05142 4.09086 4.20915 4.44209 4.49586 4.51261 4.57425 4.76886 4.82806 4.83692 4.92554 4.99206 5.10472 5.14149 5.16860 5.26533 5.29149 5.30514 5.34159 5.38044 5.41330 5.50054 5.55598 5.57485 5.64277 5.66750 5.69650 5.73009 5.86321 5.89676 5.92274 5.95932 6.01655 6.03708 6.16264 6.22365 6.53289 6.71913 6.91283 7.27875 7.60594 7.73862 8.36224 8.59536 9.24328 10.86419 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.015861 B = 0.001900 C = 0.001758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.937891 B =14731.154109 C =15926.017158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.534 4.534 8 H 0.073 0.927 9 S -0.062 6.062 10 C -0.147 4.147 11 C 0.549 3.451 12 O -0.516 6.516 13 N -0.622 5.622 14 C 0.100 3.900 15 C -0.137 4.137 16 C -0.111 4.111 17 C 0.144 3.856 18 H 0.070 0.930 19 C 0.046 3.954 20 N -0.687 5.687 21 C 0.063 3.937 22 C -0.124 4.124 23 C 0.080 3.920 24 H 0.080 0.920 25 C -0.151 4.151 26 C -0.158 4.158 27 C 0.050 3.950 28 O -0.376 6.376 29 H 0.268 0.732 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.067 0.933 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.053 0.947 39 H 0.070 0.930 40 H 0.338 0.662 41 H 0.029 0.971 42 H 0.077 0.923 43 H 0.075 0.925 44 H 0.070 0.930 45 H 0.079 0.921 46 H 0.081 0.919 47 H 0.077 0.923 48 H 0.081 0.919 49 H 0.083 0.917 50 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.940 -28.764 -4.166 29.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.682 4.682 8 H 0.091 0.909 9 S 0.165 5.835 10 C -0.298 4.298 11 C 0.337 3.663 12 O -0.390 6.390 13 N -0.360 5.360 14 C -0.023 4.023 15 C -0.175 4.175 16 C -0.149 4.149 17 C 0.040 3.960 18 H 0.089 0.911 19 C -0.084 4.084 20 N -0.317 5.317 21 C -0.066 4.066 22 C -0.163 4.163 23 C 0.022 3.978 24 H 0.098 0.902 25 C -0.189 4.189 26 C -0.196 4.196 27 C -0.027 4.027 28 O -0.295 6.295 29 H 0.077 0.923 30 H 0.107 0.893 31 H 0.106 0.894 32 H 0.085 0.915 33 H 0.096 0.904 34 H 0.100 0.900 35 H 0.093 0.907 36 H 0.098 0.902 37 H 0.096 0.904 38 H 0.071 0.929 39 H 0.089 0.911 40 H 0.155 0.845 41 H 0.047 0.953 42 H 0.096 0.904 43 H 0.094 0.906 44 H 0.089 0.911 45 H 0.097 0.903 46 H 0.100 0.900 47 H 0.096 0.904 48 H 0.100 0.900 49 H 0.101 0.899 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.645 -28.952 -4.467 29.521 hybrid contribution 1.030 1.617 0.186 1.927 sum 4.675 -27.335 -4.281 28.060 Atomic orbital electron populations 1.70032 1.05950 1.27325 1.47011 1.24994 0.95031 0.99035 0.94560 0.86111 0.79594 0.81869 0.77893 1.19606 1.20566 1.20567 1.22904 0.94939 0.91609 1.58758 0.90884 1.85378 1.05053 0.96366 1.96701 1.23517 1.06411 0.95072 1.04754 1.20023 0.85710 0.85465 0.75055 1.90680 1.15004 1.85134 1.48208 1.48571 1.06992 1.05401 1.75030 1.22290 0.80290 0.98962 1.00759 1.22872 0.98901 0.94633 1.01058 1.22593 0.92651 0.97059 1.02620 1.21392 0.96030 0.80607 0.97985 0.91149 1.22324 0.99310 0.88468 0.98280 1.60436 1.44204 1.21961 1.05133 1.21878 0.96480 0.94363 0.93889 1.21933 1.00536 0.97022 0.96760 1.22762 0.91949 0.96629 0.86460 0.90221 1.23181 1.02377 0.95404 0.97910 1.23270 0.98525 1.00865 0.96892 1.23362 0.96781 0.82899 0.99652 1.88469 1.67212 1.26891 1.46929 0.92254 0.89302 0.89381 0.91488 0.90381 0.89999 0.90696 0.90209 0.90363 0.92859 0.91112 0.84531 0.95269 0.90408 0.90633 0.91117 0.90252 0.89999 0.90391 0.89989 0.89858 0.92274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.40 13.22 55.49 0.73 -25.66 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.60 29.55 -169.99 -5.02 16.57 16 4 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.53 -15.39 9.50 30.94 0.29 -15.10 16 8 H 0.07 2.00 7.80 -52.48 -0.41 1.59 16 9 S -0.06 -1.70 20.57 -107.50 -2.21 -3.92 16 10 C -0.15 -3.09 5.09 36.01 0.18 -2.91 16 11 C 0.55 10.83 7.68 -10.98 -0.08 10.75 16 12 O -0.52 -11.99 14.65 5.56 0.08 -11.91 16 13 N -0.62 -9.34 3.07 -163.01 -0.50 -9.84 16 14 C 0.10 1.14 6.73 -2.53 -0.02 1.12 16 15 C -0.14 -1.19 7.11 -24.42 -0.17 -1.37 16 16 C -0.11 -1.06 6.29 -24.74 -0.16 -1.21 16 17 C 0.14 1.84 3.12 -66.95 -0.21 1.64 16 18 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 19 C 0.05 0.62 5.07 -3.82 -0.02 0.60 16 20 N -0.69 -7.50 6.27 -113.77 -0.71 -8.21 16 21 C 0.06 0.67 5.59 -3.82 -0.02 0.65 16 22 C -0.12 -1.03 5.04 -26.73 -0.13 -1.17 16 23 C 0.08 0.65 3.52 -26.01 -0.09 0.56 16 24 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 25 C -0.15 -0.88 6.54 -24.78 -0.16 -1.05 16 26 C -0.16 -0.84 7.16 -24.48 -0.18 -1.02 16 27 C 0.05 0.34 7.78 38.18 0.30 0.64 16 28 O -0.38 -3.75 10.63 -35.23 -0.37 -4.13 16 29 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 30 H 0.09 1.74 7.95 -51.92 -0.41 1.33 16 31 H 0.09 1.73 8.14 -51.92 -0.42 1.31 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.08 0.87 7.47 -51.93 -0.39 0.48 16 34 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.08 0.75 7.78 -51.93 -0.40 0.35 16 38 H 0.05 0.90 6.56 -51.93 -0.34 0.56 16 39 H 0.07 0.97 8.03 -51.93 -0.42 0.55 16 40 H 0.34 3.46 8.78 -39.29 -0.35 3.12 16 41 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.08 0.93 7.88 -51.93 -0.41 0.52 16 43 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 44 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.08 0.42 7.85 -51.93 -0.41 0.02 16 46 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 47 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 49 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 50 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 411.55 15.07 6.20 6.20 Total: -1.00 -34.45 411.55 -11.38 -45.83 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -9.01 Total: 0.93 kcal Atomic # 6 Polarization: -5.30 SS G_CDS: -0.57 Total: -5.86 kcal Atomic # 7 Polarization: -43.24 SS G_CDS: -0.48 Total: -43.72 kcal Atomic # 8 Polarization: -15.74 SS G_CDS: -0.29 Total: -16.04 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.92 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -34.45 -11.38 -45.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699743473.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.152 kcal (2) G-P(sol) polarization free energy of solvation -34.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds