Wall clock time and date at job start Wed Apr 1 2020 02:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86794 * 119.99901 * 2 1 4 4 H 1.48496 * 109.47143 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47014 * 299.99639 * 3 2 1 6 6 H 1.48501 * 109.47523 * 59.99743 * 3 2 1 7 7 C 1.38793 * 119.99749 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00062 * 180.02562 * 7 2 1 9 9 S 1.76198 * 120.00360 * 359.97438 * 7 2 1 10 10 C 1.81001 * 100.00253 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47288 * 180.02562 * 10 9 7 12 12 O 1.21278 * 119.99641 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99985 * 180.02562 * 11 10 9 14 14 C 1.47422 * 125.64981 * 355.09904 * 13 11 10 15 15 C 1.54912 * 104.93232 * 155.79672 * 14 13 11 16 16 C 1.55443 * 101.44900 * 37.00367 * 15 14 13 17 17 C 1.47025 * 125.64892 * 175.07280 * 13 11 10 18 18 H 1.08994 * 109.87845 * 300.50053 * 17 13 11 19 19 C 1.53001 * 109.87876 * 61.50814 * 17 13 11 20 20 N 1.46898 * 109.46850 * 184.51839 * 19 17 13 21 21 C 1.46905 * 110.99941 * 185.03504 * 20 19 17 22 22 C 1.53000 * 109.46986 * 180.02562 * 21 20 19 23 23 C 1.53001 * 109.46827 * 180.02562 * 22 21 20 24 24 H 1.09004 * 109.82223 * 305.55794 * 23 22 21 25 25 C 1.54381 * 109.82792 * 184.58721 * 23 22 21 26 26 C 1.55309 * 102.25184 * 219.12652 * 25 23 22 27 27 C 1.54938 * 100.93967 * 34.13237 * 26 25 23 28 28 O 1.43231 * 109.83170 * 66.45291 * 23 22 21 29 29 H 0.97000 * 120.00382 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.47032 * 59.99722 * 10 9 7 31 31 H 1.09000 * 109.46983 * 300.00126 * 10 9 7 32 32 H 1.09001 * 110.36438 * 274.69177 * 14 13 11 33 33 H 1.09001 * 110.37057 * 36.89765 * 14 13 11 34 34 H 1.08999 * 111.00180 * 155.13778 * 15 14 13 35 35 H 1.09000 * 110.99927 * 278.99165 * 15 14 13 36 36 H 1.08997 * 110.70651 * 206.14798 * 16 15 14 37 37 H 1.09003 * 110.86162 * 82.95758 * 16 15 14 38 38 H 1.09003 * 109.47229 * 304.52015 * 19 17 13 39 39 H 1.09006 * 109.47178 * 64.52064 * 19 17 13 40 40 H 1.00907 * 110.99962 * 61.08798 * 20 19 17 41 41 H 1.09001 * 109.47100 * 300.00455 * 21 20 19 42 42 H 1.09001 * 109.46766 * 60.00033 * 21 20 19 43 43 H 1.09001 * 109.47362 * 300.00037 * 22 21 20 44 44 H 1.09001 * 109.47552 * 60.00256 * 22 21 20 45 45 H 1.08998 * 110.85008 * 337.31890 * 25 23 22 46 46 H 1.09004 * 110.85222 * 100.93721 * 25 23 22 47 47 H 1.08998 * 111.12426 * 276.21551 * 26 25 23 48 48 H 1.09005 * 111.15920 * 152.06988 * 26 25 23 49 49 H 1.08997 * 110.31214 * 204.63747 * 27 26 25 50 50 H 1.09001 * 110.31217 * 82.47302 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8915 2.3965 1.2124 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1293 -2.7280 0.0019 10 6 2.5158 -3.8914 0.0029 11 6 1.9873 -5.3028 0.0036 12 8 0.7911 -5.5023 0.0038 13 7 2.8441 -6.3431 0.0049 14 6 4.3117 -6.2477 -0.0965 15 6 4.8424 -7.5484 0.5565 16 6 3.7767 -8.5820 0.0956 17 6 2.4699 -7.7612 0.1083 18 1 1.9316 -7.9355 1.0398 19 6 1.5923 -8.1557 -1.0813 20 7 1.1350 -9.5417 -0.9140 21 6 0.3877 -9.9956 -2.0946 22 6 -0.0715 -11.4396 -1.8832 23 6 -0.8493 -11.9125 -3.1130 24 1 -1.6635 -11.2194 -3.3245 25 6 -1.4150 -13.3270 -2.8628 26 6 -1.2156 -14.0106 -4.2430 27 6 0.1028 -13.3460 -4.7126 28 8 0.0281 -11.9908 -4.2424 29 1 -0.4851 0.8400 -0.0004 30 1 3.1244 -3.7305 0.8928 31 1 3.1244 -3.7321 -0.8872 32 1 4.6172 -6.1959 -1.1415 33 1 4.6737 -5.3752 0.4474 34 1 5.8296 -7.8041 0.1717 35 1 4.8585 -7.4617 1.6429 36 1 3.7168 -9.4132 0.7982 37 1 3.9955 -8.9432 -0.9093 38 1 0.7292 -7.4919 -1.1320 39 1 2.1695 -8.0722 -2.0022 40 1 0.5822 -9.6414 -0.0758 41 1 -0.4824 -9.3558 -2.2419 42 1 1.0302 -9.9432 -2.9735 43 1 0.7983 -12.0797 -1.7356 44 1 -0.7142 -11.4917 -1.0043 45 1 -0.8450 -13.8415 -2.0891 46 1 -2.4723 -13.2815 -2.6016 47 1 -2.0369 -13.7755 -4.9201 48 1 -1.0954 -15.0886 -4.1345 49 1 0.1701 -13.3659 -5.8003 50 1 0.9605 -13.8531 -4.2705 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699743473.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:32:40 Heat of formation + Delta-G solvation = -114.436446 kcal Electronic energy + Delta-G solvation = -27154.760437 eV Core-core repulsion = 23306.444140 eV Total energy + Delta-G solvation = -3848.316297 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.176 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.23793 -40.46644 -38.65432 -37.15818 -34.61136 -33.71409 -33.02719 -32.69041 -31.01625 -29.91829 -27.93545 -27.68540 -25.54847 -23.85600 -23.44498 -22.34757 -22.02669 -21.68305 -20.37248 -19.48373 -18.22235 -17.97297 -17.45333 -16.99282 -16.90823 -16.63730 -16.42569 -16.02334 -15.69484 -15.65128 -15.01344 -14.99322 -14.74619 -14.59240 -14.21187 -14.12798 -13.97707 -13.85986 -13.49828 -13.36005 -13.15575 -12.94000 -12.89979 -12.69035 -12.62396 -12.58595 -12.37272 -12.08247 -12.01802 -11.77166 -11.72133 -11.67059 -11.62111 -11.50160 -11.17981 -10.94719 -10.47018 -10.30835 -9.75039 -9.47987 -8.70658 -8.37104 -6.15971 1.21775 1.40131 1.43044 1.53161 1.55690 2.04379 2.25007 2.91696 2.97092 3.09385 3.25429 3.56637 3.61028 3.65436 3.88069 3.91352 3.97270 3.98637 4.10904 4.19018 4.21652 4.26983 4.28348 4.30751 4.40203 4.41574 4.45735 4.60236 4.66260 4.73913 4.81135 4.83328 4.86023 4.87976 4.93682 4.95995 5.03095 5.06777 5.10847 5.17082 5.18279 5.34092 5.39102 5.39606 5.45615 5.87968 6.13986 6.17668 6.33644 6.40220 7.03993 7.10273 8.72551 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.015861 B = 0.001900 C = 0.001758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.937891 B =14731.154109 C =15926.017158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.013 3.987 3 Si 1.001 2.999 4 H -0.256 1.256 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.546 4.546 8 H 0.083 0.917 9 S -0.151 6.151 10 C -0.120 4.120 11 C 0.545 3.455 12 O -0.563 6.563 13 N -0.614 5.614 14 C 0.087 3.913 15 C -0.123 4.123 16 C -0.099 4.099 17 C 0.139 3.861 18 H 0.063 0.937 19 C 0.057 3.943 20 N -0.672 5.672 21 C 0.066 3.934 22 C -0.113 4.113 23 C 0.074 3.926 24 H 0.070 0.930 25 C -0.146 4.146 26 C -0.152 4.152 27 C 0.040 3.960 28 O -0.405 6.405 29 H 0.271 0.729 30 H 0.106 0.894 31 H 0.103 0.897 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.112 0.888 35 H 0.080 0.920 36 H 0.098 0.902 37 H 0.082 0.918 38 H 0.010 0.990 39 H 0.066 0.934 40 H 0.344 0.656 41 H 0.012 0.988 42 H 0.063 0.937 43 H 0.077 0.923 44 H 0.084 0.916 45 H 0.088 0.912 46 H 0.092 0.908 47 H 0.077 0.923 48 H 0.101 0.899 49 H 0.088 0.912 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.725 -30.372 -3.740 31.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.822 3.178 4 H -0.180 1.180 5 H -0.199 1.199 6 H -0.198 1.198 7 C -0.693 4.693 8 H 0.101 0.899 9 S 0.076 5.924 10 C -0.271 4.271 11 C 0.333 3.667 12 O -0.442 6.442 13 N -0.349 5.349 14 C -0.035 4.035 15 C -0.161 4.161 16 C -0.137 4.137 17 C 0.036 3.964 18 H 0.081 0.919 19 C -0.074 4.074 20 N -0.302 5.302 21 C -0.064 4.064 22 C -0.151 4.151 23 C 0.016 3.984 24 H 0.088 0.912 25 C -0.184 4.184 26 C -0.190 4.190 27 C -0.036 4.036 28 O -0.325 6.325 29 H 0.080 0.920 30 H 0.124 0.876 31 H 0.122 0.878 32 H 0.097 0.903 33 H 0.101 0.899 34 H 0.130 0.870 35 H 0.099 0.901 36 H 0.116 0.884 37 H 0.101 0.899 38 H 0.028 0.972 39 H 0.085 0.915 40 H 0.161 0.839 41 H 0.030 0.970 42 H 0.082 0.918 43 H 0.096 0.904 44 H 0.102 0.898 45 H 0.107 0.893 46 H 0.110 0.890 47 H 0.096 0.904 48 H 0.119 0.881 49 H 0.106 0.894 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.480 -30.612 -4.040 31.550 hybrid contribution 0.203 1.992 0.015 2.002 sum 6.682 -28.620 -4.024 29.664 Atomic orbital electron populations 1.70194 1.08012 1.28599 1.48015 1.26157 0.95996 1.03380 0.93658 0.84876 0.78607 0.76146 0.78136 1.17960 1.19881 1.19803 1.23226 0.95335 0.91872 1.58907 0.89927 1.85566 1.10496 0.99265 1.97024 1.23315 1.03423 0.94153 1.06223 1.19789 0.85539 0.85974 0.75369 1.90665 1.17008 1.85712 1.50766 1.48557 1.08393 1.05338 1.72636 1.22683 0.77675 1.01033 1.02123 1.22877 0.99738 0.92182 1.01281 1.22559 0.90524 0.97095 1.03528 1.21610 0.97984 0.79750 0.97101 0.91932 1.22133 0.97803 0.88910 0.98526 1.60468 1.44274 1.19991 1.05508 1.21860 0.95408 0.95845 0.93240 1.21853 1.00834 0.94925 0.97517 1.22831 0.91542 0.98087 0.85932 0.91238 1.23175 1.02969 0.93727 0.98515 1.23268 0.97534 1.01801 0.96380 1.23559 0.98001 0.81906 1.00107 1.88439 1.67644 1.28846 1.47615 0.91954 0.87565 0.87829 0.90253 0.89871 0.86972 0.90138 0.88377 0.89939 0.97170 0.91532 0.83874 0.96982 0.91849 0.90412 0.89761 0.89319 0.88976 0.90391 0.88054 0.89355 0.91640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.82 13.22 21.65 0.29 -56.54 16 2 C 0.01 0.74 5.49 84.86 0.47 1.20 16 3 Si 1.00 44.16 29.55 68.60 2.03 46.19 16 4 H -0.26 -10.53 7.11 99.48 0.71 -9.83 16 5 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 6 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 7 C -0.55 -31.80 9.50 67.95 0.65 -31.16 16 8 H 0.08 4.48 7.80 -2.91 -0.02 4.46 16 9 S -0.15 -8.64 20.57 -56.49 -1.16 -9.81 16 10 C -0.12 -5.08 5.09 71.24 0.36 -4.72 16 11 C 0.55 21.99 7.68 87.66 0.67 22.66 16 12 O -0.56 -27.62 14.65 -3.02 -0.04 -27.66 16 13 N -0.61 -18.06 3.07 -788.05 -2.42 -20.47 16 14 C 0.09 1.75 6.73 86.86 0.58 2.33 16 15 C -0.12 -1.68 7.11 32.09 0.23 -1.45 16 16 C -0.10 -1.59 6.29 31.88 0.20 -1.39 16 17 C 0.14 3.46 3.12 45.34 0.14 3.61 16 18 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 19 C 0.06 1.56 5.07 86.30 0.44 2.00 16 20 N -0.67 -14.65 6.27 -513.86 -3.22 -17.87 16 21 C 0.07 1.45 5.59 86.30 0.48 1.93 16 22 C -0.11 -1.82 5.04 30.59 0.15 -1.67 16 23 C 0.07 1.19 3.52 31.06 0.11 1.30 16 24 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 25 C -0.15 -1.48 6.54 31.86 0.21 -1.27 16 26 C -0.15 -1.38 7.16 32.05 0.23 -1.15 16 27 C 0.04 0.52 7.78 72.64 0.56 1.09 16 28 O -0.41 -8.12 10.63 -148.98 -1.58 -9.70 16 29 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 30 H 0.11 4.09 7.95 -2.40 -0.02 4.07 16 31 H 0.10 4.02 8.14 -2.39 -0.02 4.01 16 32 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.08 1.63 7.47 -2.39 -0.02 1.61 16 34 H 0.11 0.96 8.14 -2.39 -0.02 0.95 16 35 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.08 1.32 7.78 -2.39 -0.02 1.30 16 38 H 0.01 0.37 6.56 -2.39 -0.02 0.35 16 39 H 0.07 1.86 8.03 -2.38 -0.02 1.84 16 40 H 0.34 6.98 8.78 -89.69 -0.79 6.19 16 41 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 42 H 0.06 1.58 7.88 -2.39 -0.02 1.56 16 43 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 44 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 45 H 0.09 0.74 7.85 -2.39 -0.02 0.73 16 46 H 0.09 0.75 8.14 -2.38 -0.02 0.73 16 47 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 48 H 0.10 0.54 8.14 -2.38 -0.02 0.52 16 49 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 50 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 Total: -1.00 -79.00 411.55 -0.50 -79.50 By element: Atomic # 1 Polarization: 22.93 SS G_CDS: 0.12 Total: 23.05 kcal Atomic # 6 Polarization: -12.18 SS G_CDS: 5.49 Total: -6.69 kcal Atomic # 7 Polarization: -89.53 SS G_CDS: -5.35 Total: -94.88 kcal Atomic # 8 Polarization: -35.74 SS G_CDS: -1.63 Total: -37.36 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Atomic # 16 Polarization: -8.64 SS G_CDS: -1.16 Total: -9.81 kcal Total: -79.00 -0.50 -79.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699743473.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.935 kcal (2) G-P(sol) polarization free energy of solvation -78.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds