Wall clock time and date at job start Wed Apr 1 2020 01:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31637 * 1 3 3 Si 1.86794 * 119.99638 * 2 1 4 4 H 1.48502 * 109.47521 * 269.99558 * 3 2 1 5 5 H 1.48502 * 109.47347 * 30.00061 * 3 2 1 6 6 H 1.48509 * 109.47181 * 149.99738 * 3 2 1 7 7 C 1.38795 * 120.00166 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99839 * 0.02562 * 7 2 1 9 9 S 1.76204 * 120.00077 * 180.02562 * 7 2 1 10 10 C 1.81004 * 99.99899 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.46746 * 180.02562 * 10 9 7 12 12 O 1.21278 * 120.00325 * 359.97438 * 11 10 9 13 13 N 1.34781 * 119.99663 * 180.02562 * 11 10 9 14 14 C 1.46926 * 120.62743 * 179.97438 * 13 11 10 15 15 C 1.53198 * 108.76997 * 233.62550 * 14 13 11 16 16 C 1.53041 * 109.31266 * 305.36316 * 15 14 13 17 17 O 1.42904 * 109.46105 * 301.36008 * 16 15 14 18 18 C 1.52997 * 109.45745 * 181.38888 * 16 15 14 19 19 N 1.46904 * 109.46950 * 184.97624 * 18 16 15 20 20 C 1.46899 * 111.00029 * 180.02562 * 19 18 16 21 21 C 1.52997 * 109.47254 * 179.97438 * 20 19 18 22 22 C 1.52992 * 109.47482 * 179.97438 * 21 20 19 23 23 C 1.52995 * 117.50322 * 243.62346 * 22 21 20 24 24 C 1.52999 * 60.00223 * 252.50829 * 23 22 21 25 25 C 1.53045 * 109.52835 * 61.37366 * 16 15 14 26 26 C 1.46924 * 120.63098 * 0.02562 * 13 11 10 27 27 H 0.96996 * 119.99669 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.46966 * 60.00015 * 10 9 7 29 29 H 1.08998 * 109.46786 * 299.99665 * 10 9 7 30 30 H 1.08996 * 109.58701 * 113.84260 * 14 13 11 31 31 H 1.08993 * 109.70595 * 353.48020 * 14 13 11 32 32 H 1.09001 * 109.49293 * 185.41200 * 15 14 13 33 33 H 1.08997 * 109.50037 * 65.31720 * 15 14 13 34 34 H 0.96700 * 113.99743 * 180.02562 * 17 16 15 35 35 H 1.08995 * 109.47319 * 64.97553 * 18 16 15 36 36 H 1.09003 * 109.47435 * 304.96878 * 18 16 15 37 37 H 1.00908 * 110.99583 * 303.94989 * 19 18 16 38 38 H 1.09002 * 109.47043 * 299.99792 * 20 19 18 39 39 H 1.09001 * 109.47354 * 59.99854 * 20 19 18 40 40 H 1.09002 * 109.47153 * 300.00004 * 21 20 19 41 41 H 1.08998 * 109.47533 * 59.99633 * 21 20 19 42 42 H 1.09005 * 115.54879 * 29.32806 * 22 21 20 43 43 H 1.09004 * 117.49787 * 359.97438 * 23 22 21 44 44 H 1.09002 * 117.50423 * 145.01738 * 23 22 21 45 45 H 1.09000 * 117.49408 * 252.50795 * 24 23 22 46 46 H 1.09001 * 117.50131 * 107.48609 * 24 23 22 47 47 H 1.09005 * 109.49420 * 58.57452 * 25 16 15 48 48 H 1.08993 * 109.49773 * 178.67216 * 25 16 15 49 49 H 1.08994 * 109.58985 * 246.16107 * 26 13 11 50 50 H 1.09006 * 109.58745 * 6.59028 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4979 2.0465 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5479 1.4403 0.7001 7 6 2.0104 -1.2020 0.0005 8 1 1.4703 -2.1374 0.0005 9 16 3.7724 -1.2020 0.0012 10 6 4.0867 -2.9845 0.0009 11 6 5.5732 -3.2324 0.0021 12 8 6.3442 -2.2962 0.0025 13 7 6.0459 -4.4946 0.0016 14 6 7.4924 -4.7522 0.0021 15 6 7.8274 -5.6849 -1.1661 16 6 6.9644 -6.9452 -1.0712 17 8 7.2066 -7.5950 0.1783 18 6 7.3209 -7.8945 -2.2169 19 7 6.4128 -9.0490 -2.1967 20 6 6.7263 -9.9845 -3.2851 21 6 5.7622 -11.1713 -3.2311 22 6 6.0884 -12.1453 -4.3649 23 6 5.0203 -12.3629 -5.4386 24 6 5.3084 -13.4607 -4.4126 25 6 5.4861 -6.5615 -1.1682 26 6 5.1244 -5.6390 -0.0007 27 1 -0.4849 0.8400 -0.0004 28 1 3.6441 -3.4313 -0.8893 29 1 3.6435 -3.4317 0.8907 30 1 7.7789 -5.2255 0.9412 31 1 8.0330 -3.8129 -0.1136 32 1 8.8809 -5.9610 -1.1206 33 1 7.6248 -5.1753 -2.1081 34 1 6.6923 -8.4037 0.3072 35 1 8.3483 -8.2383 -2.0976 36 1 7.2211 -7.3704 -3.1674 37 1 6.4391 -9.5142 -1.3017 38 1 6.6228 -9.4751 -4.2432 39 1 7.7496 -10.3428 -3.1727 40 1 5.8662 -11.6806 -2.2730 41 1 4.7388 -10.8135 -3.3432 42 1 7.1315 -12.1670 -4.6807 43 1 4.0850 -11.8124 -5.3369 44 1 5.3605 -12.5276 -6.4610 45 1 5.8382 -14.3477 -4.7600 46 1 4.5629 -13.6322 -3.6361 47 1 5.3057 -6.0435 -2.1102 48 1 4.8729 -7.4615 -1.1242 49 1 5.2173 -6.1848 0.9382 50 1 4.1008 -5.2837 -0.1196 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717316607.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:28:52 Heat of formation + Delta-G solvation = -68.673886 kcal Electronic energy + Delta-G solvation = -27459.133307 eV Core-core repulsion = 23612.801423 eV Total energy + Delta-G solvation = -3846.331884 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.176 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.41067 -38.80693 -38.16454 -36.08102 -35.19100 -32.50422 -32.40937 -31.53608 -30.28212 -29.08370 -26.45863 -25.57672 -23.60526 -23.34328 -22.83087 -22.39974 -20.98497 -20.67879 -19.17001 -17.70807 -17.25314 -16.79875 -16.37339 -15.87644 -15.67196 -15.47542 -15.25615 -14.99483 -14.91283 -14.75198 -14.00483 -13.94729 -13.75338 -13.66816 -13.61679 -13.08631 -12.78923 -12.69621 -12.34200 -12.21053 -12.14293 -12.05796 -11.87367 -11.75748 -11.72132 -11.38511 -11.34060 -11.23461 -10.98808 -10.80630 -10.58621 -10.49686 -10.33510 -10.17780 -9.83258 -9.39265 -8.98108 -8.93976 -8.49325 -8.45537 -6.88947 -6.26734 -3.98046 2.76868 2.99934 3.25138 3.29577 3.35138 3.52557 3.52961 3.62833 3.87852 4.29524 4.35225 4.38094 4.42623 4.46264 4.51909 4.55071 4.70631 4.72799 4.83642 4.94800 4.98825 5.07417 5.12337 5.18833 5.19308 5.21404 5.23159 5.24480 5.44294 5.45688 5.47981 5.50534 5.55150 5.60118 5.67270 5.68053 5.77931 5.79252 5.85989 5.88963 5.97388 6.03255 6.13182 6.44133 6.65771 6.80537 7.31063 7.56426 7.96381 8.43705 8.51159 9.19652 10.82460 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.014975 B = 0.002015 C = 0.001834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.343367 B =13894.160294 C =15266.998138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.095 3.905 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.520 4.520 8 H 0.088 0.912 9 S -0.144 6.144 10 C -0.121 4.121 11 C 0.533 3.467 12 O -0.522 6.522 13 N -0.616 5.616 14 C 0.120 3.880 15 C -0.119 4.119 16 C 0.138 3.862 17 O -0.554 6.554 18 C 0.033 3.967 19 N -0.687 5.687 20 C 0.063 3.937 21 C -0.087 4.087 22 C -0.154 4.154 23 C -0.180 4.180 24 C -0.181 4.181 25 C -0.150 4.150 26 C 0.110 3.890 27 H 0.270 0.730 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.071 0.929 31 H 0.091 0.909 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.371 0.629 35 H 0.039 0.961 36 H 0.082 0.918 37 H 0.336 0.664 38 H 0.074 0.926 39 H 0.030 0.970 40 H 0.064 0.936 41 H 0.074 0.926 42 H 0.102 0.898 43 H 0.096 0.904 44 H 0.092 0.908 45 H 0.092 0.908 46 H 0.094 0.906 47 H 0.076 0.924 48 H 0.090 0.910 49 H 0.071 0.929 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.882 -27.240 -6.479 31.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.113 4.113 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.159 1.159 7 C -0.668 4.668 8 H 0.106 0.894 9 S 0.082 5.918 10 C -0.271 4.271 11 C 0.321 3.679 12 O -0.397 6.397 13 N -0.352 5.352 14 C -0.003 4.003 15 C -0.158 4.158 16 C 0.097 3.903 17 O -0.360 6.360 18 C -0.096 4.096 19 N -0.318 5.318 20 C -0.066 4.066 21 C -0.125 4.125 22 C -0.173 4.173 23 C -0.217 4.217 24 C -0.218 4.218 25 C -0.188 4.188 26 C -0.013 4.013 27 H 0.080 0.920 28 H 0.114 0.886 29 H 0.114 0.886 30 H 0.089 0.911 31 H 0.109 0.891 32 H 0.097 0.903 33 H 0.099 0.901 34 H 0.219 0.781 35 H 0.057 0.943 36 H 0.101 0.899 37 H 0.154 0.846 38 H 0.093 0.907 39 H 0.048 0.952 40 H 0.083 0.917 41 H 0.093 0.907 42 H 0.120 0.880 43 H 0.114 0.886 44 H 0.111 0.889 45 H 0.111 0.889 46 H 0.113 0.887 47 H 0.094 0.906 48 H 0.108 0.892 49 H 0.089 0.911 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 15.768 -24.902 -6.751 30.237 hybrid contribution -0.420 -1.406 0.048 1.468 sum 15.348 -26.308 -6.702 31.186 Atomic orbital electron populations 1.69943 1.05895 1.27721 1.48182 1.24711 0.94452 0.98952 0.93212 0.86734 0.81919 0.83282 0.79908 1.19240 1.19971 1.15916 1.22317 0.88282 0.97511 1.58643 0.89408 1.84787 1.09243 1.00323 1.97401 1.23304 0.94269 1.04028 1.05503 1.20291 0.90584 0.81924 0.75151 1.90677 1.58752 1.41762 1.48531 1.48054 1.06584 1.05569 1.74968 1.21379 0.81224 0.99704 0.97962 1.21895 0.99708 0.94023 1.00148 1.21208 0.94845 0.91513 0.82734 1.86592 1.69073 1.42831 1.37507 1.22666 0.94251 0.92474 1.00215 1.60494 1.54296 1.10007 1.07027 1.21936 0.96673 0.92646 0.95360 1.21139 1.00245 0.94008 0.97097 1.22268 0.97283 0.98229 0.99523 1.23058 1.00341 1.03017 0.95247 1.22967 1.03597 0.92673 1.02608 1.22452 0.96114 1.00649 0.99611 1.21682 0.93914 0.87081 0.98641 0.91980 0.88617 0.88582 0.91063 0.89056 0.90343 0.90078 0.78130 0.94260 0.89927 0.84633 0.90704 0.95220 0.91716 0.90696 0.87981 0.88558 0.88938 0.88921 0.88721 0.90573 0.89151 0.91098 0.89316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.70 13.97 55.49 0.78 -25.92 16 2 C 0.10 2.81 5.50 -17.43 -0.10 2.71 16 3 Si 0.86 22.00 27.74 -169.99 -4.71 17.29 16 4 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.27 -6.78 7.11 56.52 0.40 -6.37 16 6 H -0.24 -6.05 6.74 56.52 0.38 -5.67 16 7 C -0.52 -15.10 10.04 30.94 0.31 -14.79 16 8 H 0.09 2.65 8.03 -52.48 -0.42 2.23 16 9 S -0.14 -3.72 18.55 -107.50 -1.99 -5.71 16 10 C -0.12 -2.41 4.50 36.01 0.16 -2.25 16 11 C 0.53 9.99 7.72 -10.98 -0.08 9.90 16 12 O -0.52 -11.65 15.28 5.56 0.08 -11.56 16 13 N -0.62 -8.74 2.97 -172.81 -0.51 -9.25 16 14 C 0.12 1.50 6.19 -3.71 -0.02 1.47 16 15 C -0.12 -1.14 5.11 -26.61 -0.14 -1.28 16 16 C 0.14 1.11 0.79 -90.58 -0.07 1.04 16 17 O -0.55 -4.41 11.69 -35.23 -0.41 -4.82 16 18 C 0.03 0.23 4.89 -3.82 -0.02 0.21 16 19 N -0.69 -3.98 5.50 -113.78 -0.63 -4.60 16 20 C 0.06 0.35 5.64 -3.83 -0.02 0.33 16 21 C -0.09 -0.46 5.76 -26.74 -0.15 -0.61 16 22 C -0.15 -0.82 5.74 -90.63 -0.52 -1.34 16 23 C -0.18 -0.98 10.18 -26.73 -0.27 -1.25 16 24 C -0.18 -0.93 10.25 -26.73 -0.27 -1.20 16 25 C -0.15 -1.33 4.89 -26.64 -0.13 -1.47 16 26 C 0.11 1.22 6.10 -3.75 -0.02 1.20 16 27 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 28 H 0.10 1.78 7.69 -51.92 -0.40 1.38 16 29 H 0.10 1.81 7.94 -51.92 -0.41 1.39 16 30 H 0.07 0.87 7.81 -51.93 -0.41 0.46 16 31 H 0.09 1.28 7.01 -51.93 -0.36 0.92 16 32 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.37 1.80 7.62 45.56 0.35 2.15 16 35 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 36 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.34 1.52 7.31 -39.29 -0.29 1.24 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.03 0.17 8.14 -51.93 -0.42 -0.26 16 40 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.07 0.46 7.87 -51.93 -0.41 0.05 16 42 H 0.10 0.52 8.08 -51.93 -0.42 0.10 16 43 H 0.10 0.54 8.03 -51.93 -0.42 0.12 16 44 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 45 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 46 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 47 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 48 H 0.09 0.70 7.43 -51.93 -0.39 0.32 16 49 H 0.07 0.73 7.81 -51.93 -0.41 0.32 16 50 H 0.09 1.02 5.93 -51.93 -0.31 0.72 16 LS Contribution 406.37 15.07 6.12 6.12 Total: -1.00 -34.03 406.37 -10.72 -44.75 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -8.09 Total: 1.03 kcal Atomic # 6 Polarization: -5.97 SS G_CDS: -1.35 Total: -7.32 kcal Atomic # 7 Polarization: -39.41 SS G_CDS: -0.36 Total: -39.78 kcal Atomic # 8 Polarization: -16.05 SS G_CDS: -0.33 Total: -16.38 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.71 Total: 17.29 kcal Atomic # 16 Polarization: -3.72 SS G_CDS: -1.99 Total: -5.71 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -34.03 -10.72 -44.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717316607.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.925 kcal (2) G-P(sol) polarization free energy of solvation -34.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds