Wall clock time and date at job start Wed Apr 1 2020 01:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31637 * 1 3 3 Si 1.86794 * 119.99638 * 2 1 4 4 H 1.48502 * 109.47521 * 269.99558 * 3 2 1 5 5 H 1.48502 * 109.47347 * 30.00061 * 3 2 1 6 6 H 1.48509 * 109.47181 * 149.99738 * 3 2 1 7 7 C 1.38795 * 120.00166 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99839 * 0.02562 * 7 2 1 9 9 S 1.76204 * 120.00077 * 180.02562 * 7 2 1 10 10 C 1.81004 * 99.99899 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.46746 * 180.02562 * 10 9 7 12 12 O 1.21278 * 120.00325 * 359.97438 * 11 10 9 13 13 N 1.34781 * 119.99663 * 180.02562 * 11 10 9 14 14 C 1.46926 * 120.62743 * 179.97438 * 13 11 10 15 15 C 1.53198 * 108.76997 * 233.62550 * 14 13 11 16 16 C 1.53041 * 109.31266 * 305.36316 * 15 14 13 17 17 O 1.42904 * 109.46105 * 301.36008 * 16 15 14 18 18 C 1.52997 * 109.45745 * 181.38888 * 16 15 14 19 19 N 1.46904 * 109.46950 * 184.97624 * 18 16 15 20 20 C 1.46899 * 111.00029 * 180.02562 * 19 18 16 21 21 C 1.52997 * 109.47254 * 179.97438 * 20 19 18 22 22 C 1.52992 * 109.47482 * 179.97438 * 21 20 19 23 23 C 1.52995 * 117.50322 * 243.62346 * 22 21 20 24 24 C 1.52999 * 60.00223 * 252.50829 * 23 22 21 25 25 C 1.53045 * 109.52835 * 61.37366 * 16 15 14 26 26 C 1.46924 * 120.63098 * 0.02562 * 13 11 10 27 27 H 0.96996 * 119.99669 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.46966 * 60.00015 * 10 9 7 29 29 H 1.08998 * 109.46786 * 299.99665 * 10 9 7 30 30 H 1.08996 * 109.58701 * 113.84260 * 14 13 11 31 31 H 1.08993 * 109.70595 * 353.48020 * 14 13 11 32 32 H 1.09001 * 109.49293 * 185.41200 * 15 14 13 33 33 H 1.08997 * 109.50037 * 65.31720 * 15 14 13 34 34 H 0.96700 * 113.99743 * 180.02562 * 17 16 15 35 35 H 1.08995 * 109.47319 * 64.97553 * 18 16 15 36 36 H 1.09003 * 109.47435 * 304.96878 * 18 16 15 37 37 H 1.00908 * 110.99583 * 303.94989 * 19 18 16 38 38 H 1.09002 * 109.47043 * 299.99792 * 20 19 18 39 39 H 1.09001 * 109.47354 * 59.99854 * 20 19 18 40 40 H 1.09002 * 109.47153 * 300.00004 * 21 20 19 41 41 H 1.08998 * 109.47533 * 59.99633 * 21 20 19 42 42 H 1.09005 * 115.54879 * 29.32806 * 22 21 20 43 43 H 1.09004 * 117.49787 * 359.97438 * 23 22 21 44 44 H 1.09002 * 117.50423 * 145.01738 * 23 22 21 45 45 H 1.09000 * 117.49408 * 252.50795 * 24 23 22 46 46 H 1.09001 * 117.50131 * 107.48609 * 24 23 22 47 47 H 1.09005 * 109.49420 * 58.57452 * 25 16 15 48 48 H 1.08993 * 109.49773 * 178.67216 * 25 16 15 49 49 H 1.08994 * 109.58985 * 246.16107 * 26 13 11 50 50 H 1.09006 * 109.58745 * 6.59028 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4979 2.0465 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5479 1.4403 0.7001 7 6 2.0104 -1.2020 0.0005 8 1 1.4703 -2.1374 0.0005 9 16 3.7724 -1.2020 0.0012 10 6 4.0867 -2.9845 0.0009 11 6 5.5732 -3.2324 0.0021 12 8 6.3442 -2.2962 0.0025 13 7 6.0459 -4.4946 0.0016 14 6 7.4924 -4.7522 0.0021 15 6 7.8274 -5.6849 -1.1661 16 6 6.9644 -6.9452 -1.0712 17 8 7.2066 -7.5950 0.1783 18 6 7.3209 -7.8945 -2.2169 19 7 6.4128 -9.0490 -2.1967 20 6 6.7263 -9.9845 -3.2851 21 6 5.7622 -11.1713 -3.2311 22 6 6.0884 -12.1453 -4.3649 23 6 5.0203 -12.3629 -5.4386 24 6 5.3084 -13.4607 -4.4126 25 6 5.4861 -6.5615 -1.1682 26 6 5.1244 -5.6390 -0.0007 27 1 -0.4849 0.8400 -0.0004 28 1 3.6441 -3.4313 -0.8893 29 1 3.6435 -3.4317 0.8907 30 1 7.7789 -5.2255 0.9412 31 1 8.0330 -3.8129 -0.1136 32 1 8.8809 -5.9610 -1.1206 33 1 7.6248 -5.1753 -2.1081 34 1 6.6923 -8.4037 0.3072 35 1 8.3483 -8.2383 -2.0976 36 1 7.2211 -7.3704 -3.1674 37 1 6.4391 -9.5142 -1.3017 38 1 6.6228 -9.4751 -4.2432 39 1 7.7496 -10.3428 -3.1727 40 1 5.8662 -11.6806 -2.2730 41 1 4.7388 -10.8135 -3.3432 42 1 7.1315 -12.1670 -4.6807 43 1 4.0850 -11.8124 -5.3369 44 1 5.3605 -12.5276 -6.4610 45 1 5.8382 -14.3477 -4.7600 46 1 4.5629 -13.6322 -3.6361 47 1 5.3057 -6.0435 -2.1102 48 1 4.8729 -7.4615 -1.1242 49 1 5.2173 -6.1848 0.9382 50 1 4.1008 -5.2837 -0.1196 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717316607.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:28:50 Heat of formation + Delta-G solvation = -92.084348 kcal Electronic energy + Delta-G solvation = -27460.148460 eV Core-core repulsion = 23612.801423 eV Total energy + Delta-G solvation = -3847.347038 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.176 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.43216 -39.82956 -38.66077 -36.93876 -35.90980 -34.67047 -33.40873 -32.38645 -31.06271 -30.34259 -27.88140 -27.20337 -24.44843 -24.10036 -23.29155 -22.97356 -21.73699 -21.22963 -20.43198 -19.57188 -18.25904 -17.78018 -17.18891 -17.06421 -16.84014 -16.60172 -16.30191 -16.01510 -15.82219 -15.47968 -15.31902 -14.96720 -14.92138 -14.67390 -14.53583 -14.26627 -14.00690 -13.72287 -13.42515 -13.32959 -13.14996 -13.01851 -12.82533 -12.64735 -12.62980 -12.45949 -12.27357 -12.20982 -12.14977 -12.10848 -11.86254 -11.42812 -11.17073 -11.11269 -10.96978 -10.78371 -10.73381 -10.51066 -9.66941 -9.40245 -9.00436 -8.51375 -6.22464 0.97401 1.31170 1.46227 1.52126 1.54420 2.08614 2.25288 2.68472 2.86692 2.87983 3.05079 3.26761 3.52602 3.74587 3.78905 3.87014 3.96182 4.03457 4.05362 4.10609 4.17454 4.28662 4.33966 4.36007 4.40272 4.41508 4.54138 4.61587 4.63826 4.72240 4.76048 4.80706 4.82934 4.86246 4.94463 5.01045 5.04574 5.07633 5.17941 5.22249 5.27798 5.32524 5.45114 5.56566 5.71055 5.96027 6.11375 6.28064 6.41981 6.85872 6.93755 7.08738 8.60917 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.014975 B = 0.002015 C = 0.001834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.343367 B =13894.160294 C =15266.998138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.046 3.954 3 Si 0.914 3.086 4 H -0.262 1.262 5 H -0.258 1.258 6 H -0.238 1.238 7 C -0.528 4.528 8 H 0.063 0.937 9 S -0.177 6.177 10 C -0.105 4.105 11 C 0.532 3.468 12 O -0.566 6.566 13 N -0.602 5.602 14 C 0.118 3.882 15 C -0.116 4.116 16 C 0.147 3.853 17 O -0.563 6.563 18 C 0.043 3.957 19 N -0.688 5.688 20 C 0.067 3.933 21 C -0.080 4.080 22 C -0.156 4.156 23 C -0.188 4.188 24 C -0.181 4.181 25 C -0.141 4.141 26 C 0.103 3.897 27 H 0.277 0.723 28 H 0.110 0.890 29 H 0.109 0.891 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.094 0.906 33 H 0.076 0.924 34 H 0.387 0.613 35 H 0.042 0.958 36 H 0.076 0.924 37 H 0.345 0.655 38 H 0.065 0.935 39 H 0.033 0.967 40 H 0.071 0.929 41 H 0.065 0.935 42 H 0.105 0.895 43 H 0.092 0.908 44 H 0.095 0.905 45 H 0.098 0.902 46 H 0.096 0.904 47 H 0.064 0.936 48 H 0.108 0.892 49 H 0.087 0.913 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.118 -29.044 -6.479 33.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.159 4.159 3 Si 0.736 3.264 4 H -0.187 1.187 5 H -0.182 1.182 6 H -0.162 1.162 7 C -0.675 4.675 8 H 0.081 0.919 9 S 0.050 5.950 10 C -0.255 4.255 11 C 0.319 3.681 12 O -0.445 6.445 13 N -0.336 5.336 14 C -0.004 4.004 15 C -0.154 4.154 16 C 0.106 3.894 17 O -0.370 6.370 18 C -0.087 4.087 19 N -0.321 5.321 20 C -0.062 4.062 21 C -0.118 4.118 22 C -0.175 4.175 23 C -0.225 4.225 24 C -0.218 4.218 25 C -0.180 4.180 26 C -0.019 4.019 27 H 0.086 0.914 28 H 0.128 0.872 29 H 0.128 0.872 30 H 0.097 0.903 31 H 0.090 0.910 32 H 0.112 0.888 33 H 0.095 0.905 34 H 0.237 0.763 35 H 0.060 0.940 36 H 0.095 0.905 37 H 0.165 0.835 38 H 0.084 0.916 39 H 0.052 0.948 40 H 0.090 0.910 41 H 0.084 0.916 42 H 0.123 0.877 43 H 0.110 0.890 44 H 0.114 0.886 45 H 0.117 0.883 46 H 0.114 0.886 47 H 0.083 0.917 48 H 0.126 0.874 49 H 0.106 0.894 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 16.994 -26.778 -6.746 32.424 hybrid contribution -0.788 -1.059 0.065 1.322 sum 16.205 -27.837 -6.681 32.896 Atomic orbital electron populations 1.70015 1.07217 1.29003 1.49104 1.25547 0.95286 1.02189 0.92898 0.85876 0.80653 0.79672 0.80220 1.18675 1.18227 1.16231 1.22441 0.90088 0.96729 1.58281 0.91901 1.84716 1.06618 1.06127 1.97554 1.23267 0.95948 0.99466 1.06869 1.20034 0.89518 0.83056 0.75449 1.90661 1.59258 1.43415 1.51135 1.48083 1.08040 1.04785 1.72681 1.21505 0.79600 0.99566 0.99708 1.21866 1.01062 0.94058 0.98451 1.21012 0.93645 0.91208 0.83509 1.86564 1.69554 1.43785 1.37145 1.22495 0.94537 0.92445 0.99193 1.60452 1.53964 1.09973 1.07675 1.21875 0.96944 0.92520 0.94857 1.21061 0.99522 0.93843 0.97385 1.22313 0.97392 0.98369 0.99446 1.23103 1.00363 1.03437 0.95614 1.23030 1.03578 0.92802 1.02429 1.22400 0.97182 1.00537 0.97857 1.21959 0.93031 0.86365 1.00570 0.91355 0.87187 0.87239 0.90291 0.91023 0.88767 0.90516 0.76347 0.93969 0.90527 0.83544 0.91632 0.94830 0.91037 0.91641 0.87667 0.88954 0.88631 0.88317 0.88583 0.91692 0.87371 0.89438 0.89756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.97 13.97 21.65 0.30 -55.67 16 2 C 0.05 2.74 5.50 84.86 0.47 3.21 16 3 Si 0.91 45.51 27.74 68.60 1.90 47.41 16 4 H -0.26 -12.72 7.11 99.48 0.71 -12.01 16 5 H -0.26 -12.01 7.11 99.48 0.71 -11.30 16 6 H -0.24 -11.92 6.74 99.48 0.67 -11.25 16 7 C -0.53 -31.08 10.04 67.95 0.68 -30.40 16 8 H 0.06 3.89 8.03 -2.91 -0.02 3.86 16 9 S -0.18 -9.16 18.55 -56.49 -1.05 -10.21 16 10 C -0.10 -4.14 4.50 71.24 0.32 -3.82 16 11 C 0.53 19.70 7.72 87.66 0.68 20.38 16 12 O -0.57 -25.41 15.28 -3.02 -0.05 -25.46 16 13 N -0.60 -16.31 2.97 -819.03 -2.43 -18.74 16 14 C 0.12 2.79 6.19 86.36 0.53 3.33 16 15 C -0.12 -1.99 5.11 30.67 0.16 -1.83 16 16 C 0.15 1.98 0.79 -10.77 -0.01 1.97 16 17 O -0.56 -7.07 11.69 -148.98 -1.74 -8.81 16 18 C 0.04 0.47 4.89 86.30 0.42 0.89 16 19 N -0.69 -6.13 5.50 -513.89 -2.83 -8.96 16 20 C 0.07 0.61 5.64 86.30 0.49 1.10 16 21 C -0.08 -0.70 5.76 30.59 0.18 -0.52 16 22 C -0.16 -1.44 5.74 -10.80 -0.06 -1.50 16 23 C -0.19 -1.87 10.18 30.59 0.31 -1.56 16 24 C -0.18 -1.62 10.25 30.59 0.31 -1.30 16 25 C -0.14 -2.17 4.89 30.65 0.15 -2.02 16 26 C 0.10 2.06 6.10 86.34 0.53 2.58 16 27 H 0.28 15.65 8.31 -92.71 -0.77 14.88 16 28 H 0.11 4.03 7.69 -2.40 -0.02 4.01 16 29 H 0.11 4.03 7.94 -2.40 -0.02 4.01 16 30 H 0.08 1.77 7.81 -2.39 -0.02 1.76 16 31 H 0.07 2.00 7.01 -2.39 -0.02 1.99 16 32 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.39 2.29 7.62 -74.06 -0.56 1.73 16 35 H 0.04 0.47 8.14 -2.39 -0.02 0.45 16 36 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.35 2.01 7.31 -89.69 -0.66 1.35 16 38 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.03 0.29 8.14 -2.39 -0.02 0.27 16 40 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 41 H 0.06 0.71 7.87 -2.39 -0.02 0.69 16 42 H 0.11 0.90 8.08 -2.38 -0.02 0.88 16 43 H 0.09 0.97 8.03 -2.38 -0.02 0.96 16 44 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 45 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 46 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 47 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 48 H 0.11 1.33 7.43 -2.39 -0.02 1.31 16 49 H 0.09 1.53 7.81 -2.39 -0.02 1.51 16 50 H 0.08 1.79 5.93 -2.38 -0.01 1.77 16 Total: -1.00 -73.56 406.37 -1.06 -74.62 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: -0.32 Total: 15.31 kcal Atomic # 6 Polarization: -14.65 SS G_CDS: 5.15 Total: -9.50 kcal Atomic # 7 Polarization: -78.42 SS G_CDS: -4.96 Total: -83.38 kcal Atomic # 8 Polarization: -32.48 SS G_CDS: -1.79 Total: -34.26 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 1.90 Total: 47.41 kcal Atomic # 16 Polarization: -9.16 SS G_CDS: -1.05 Total: -10.21 kcal Total: -73.56 -1.06 -74.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717316607.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.462 kcal (2) G-P(sol) polarization free energy of solvation -73.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds