Wall clock time and date at job start Wed Apr 1 2020 01:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47355 * 2 1 4 4 C 1.53001 * 109.46831 * 180.02562 * 3 2 1 5 5 C 1.50699 * 109.46998 * 180.02562 * 4 3 2 6 6 O 1.21288 * 119.99978 * 359.97438 * 5 4 3 7 7 N 1.34776 * 120.00129 * 180.02562 * 5 4 3 8 8 C 1.46502 * 119.99960 * 180.02562 * 7 5 4 9 9 H 1.09000 * 109.47430 * 34.99448 * 8 7 5 10 10 C 1.53001 * 109.47146 * 274.99472 * 8 7 5 11 11 C 1.52999 * 109.47354 * 154.99635 * 8 7 5 12 12 H 1.09007 * 110.91090 * 59.17725 * 11 8 7 13 13 C 1.55154 * 111.00150 * 295.27872 * 11 8 7 14 14 C 1.54321 * 102.85991 * 206.22734 * 13 11 8 15 15 N 1.47016 * 107.27585 * 22.52513 * 14 13 11 16 16 C 1.34776 * 125.64636 * 180.96839 * 15 14 13 17 17 O 1.21280 * 120.00120 * 179.69526 * 16 15 14 18 18 C 1.50702 * 120.00157 * 359.69357 * 16 15 14 19 19 S 1.81004 * 109.47031 * 180.02562 * 18 16 15 20 20 C 1.76202 * 99.99794 * 180.02562 * 19 18 16 21 21 H 1.08004 * 120.00091 * 359.97438 * 20 19 18 22 22 C 1.38798 * 120.00043 * 179.97438 * 20 19 18 23 23 N 1.31628 * 120.00017 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00053 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47131 * 180.02562 * 24 22 20 26 26 H 1.48503 * 109.47418 * 299.99797 * 24 22 20 27 27 H 1.48496 * 109.47198 * 60.00150 * 24 22 20 28 28 C 1.47420 * 108.70523 * 0.70516 * 15 14 13 29 29 H 1.09001 * 109.46692 * 59.99929 * 1 2 3 30 30 H 1.08998 * 109.47237 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47227 * 300.00400 * 1 2 3 32 32 H 1.09007 * 109.47085 * 239.99703 * 2 1 3 33 33 H 1.09003 * 109.47041 * 120.00477 * 2 1 3 34 34 H 1.08998 * 109.47236 * 60.00105 * 3 2 1 35 35 H 1.09001 * 109.47278 * 299.99712 * 3 2 1 36 36 H 1.08993 * 109.47854 * 60.00176 * 4 3 2 37 37 H 1.08997 * 109.47278 * 299.99558 * 4 3 2 38 38 H 0.97000 * 120.00086 * 359.97438 * 7 5 4 39 39 H 1.09005 * 109.47142 * 294.78246 * 10 8 7 40 40 H 1.09003 * 109.46823 * 54.77482 * 10 8 7 41 41 H 1.09000 * 109.47766 * 174.77311 * 10 8 7 42 42 H 1.08991 * 110.72564 * 324.78297 * 13 11 8 43 43 H 1.09003 * 110.71858 * 87.88556 * 13 11 8 44 44 H 1.09007 * 109.98649 * 263.04572 * 14 13 11 45 45 H 1.08992 * 109.77290 * 141.89004 * 14 13 11 46 46 H 1.08997 * 109.46942 * 59.99924 * 18 16 15 47 47 H 1.08998 * 109.46885 * 300.00115 * 18 16 15 48 48 H 0.96998 * 119.99809 * 359.97438 * 23 22 20 49 49 H 1.09000 * 110.36885 * 94.93657 * 28 15 14 50 50 H 1.09003 * 110.36947 * 217.26056 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4423 -0.0006 5 6 4.0725 2.8631 0.0000 6 8 3.2844 3.7850 0.0004 7 7 5.3976 3.1093 -0.0009 8 6 5.8860 4.4905 0.0002 9 1 5.2140 5.1131 0.5910 10 6 5.9363 5.0149 -1.4362 11 6 7.2891 4.5348 0.6087 12 1 7.9783 3.9074 0.0434 13 6 7.2600 4.1219 2.1040 14 6 8.4938 4.8451 2.6840 15 7 8.8001 5.9713 1.7900 16 6 9.8207 6.8385 1.9406 17 8 9.9821 7.7308 1.1352 18 6 10.7614 6.6995 3.1097 19 16 12.0148 8.0032 3.0339 20 6 12.9511 7.6115 4.4742 21 1 12.6678 6.7710 5.0904 22 6 14.0528 8.3831 4.8168 23 7 14.3978 9.4078 4.0661 24 14 15.0451 7.9683 6.3442 25 1 16.1615 8.9370 6.4874 26 1 14.1680 8.0443 7.5401 27 1 15.5943 6.5942 6.2196 28 6 7.8098 5.9910 0.6982 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.6768 1.9563 0.8900 35 1 1.6768 1.9563 -0.8900 36 1 3.9331 0.9287 -0.8908 37 1 3.9337 0.9284 0.8891 38 1 6.0279 2.3720 -0.0016 39 1 6.6771 4.4511 -2.0031 40 1 4.9571 4.8972 -1.9004 41 1 6.2102 6.0699 -1.4286 42 1 6.3445 4.4695 2.5824 43 1 7.3616 3.0416 2.2078 44 1 9.3420 4.1615 2.7233 45 1 8.2676 5.2160 3.6836 46 1 11.2476 5.7248 3.0709 47 1 10.2005 6.7890 4.0400 48 1 13.8823 9.6234 3.2732 49 1 6.9932 6.6718 0.9389 50 1 8.2840 6.2826 -0.2390 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050097255.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:49:15 Heat of formation + Delta-G solvation = -105.955935 kcal Electronic energy + Delta-G solvation = -26885.191292 eV Core-core repulsion = 23037.242737 eV Total energy + Delta-G solvation = -3847.948555 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.176 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.57858 -39.72996 -37.80919 -35.99178 -35.36151 -32.54637 -32.52006 -31.12964 -30.38352 -29.59020 -27.83801 -25.54772 -24.88247 -23.96111 -22.51473 -21.56915 -20.91386 -20.46913 -19.42263 -18.26503 -17.39404 -17.12964 -16.74430 -16.42584 -15.76613 -15.35834 -15.10836 -14.58914 -14.35816 -14.22279 -14.15903 -14.04278 -13.84257 -13.64449 -13.45418 -13.08855 -12.93571 -12.79535 -12.68717 -12.54747 -12.38458 -11.95177 -11.87588 -11.82276 -11.74755 -11.68550 -11.48179 -11.39407 -11.20695 -11.05098 -11.01837 -10.93011 -10.18502 -10.15504 -9.59884 -9.58813 -9.45227 -9.02788 -8.62129 -8.24001 -6.69130 -6.63455 -4.01638 2.28306 2.63961 2.83765 2.93675 3.31661 3.36760 3.43887 3.56922 4.05270 4.13685 4.23733 4.30941 4.34328 4.37881 4.46020 4.75370 4.79511 4.83638 4.85776 4.88712 4.98995 4.99111 5.10365 5.16315 5.17310 5.21227 5.34660 5.34815 5.36639 5.38526 5.41544 5.47924 5.52249 5.60407 5.61616 5.66987 5.69052 5.78387 5.79748 5.82800 5.90068 5.92541 5.99274 6.11332 6.30172 7.09355 7.54191 7.85836 7.90043 8.42064 8.48688 9.25789 10.80452 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.028127 B = 0.001629 C = 0.001559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.243819 B =17189.062778 C =17957.257228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.105 4.105 4 C -0.141 4.141 5 C 0.512 3.488 6 O -0.539 6.539 7 N -0.727 5.727 8 C 0.154 3.846 9 H 0.092 0.908 10 C -0.166 4.166 11 C -0.111 4.111 12 H 0.092 0.908 13 C -0.123 4.123 14 C 0.101 3.899 15 N -0.626 5.626 16 C 0.547 3.453 17 O -0.515 6.515 18 C -0.124 4.124 19 S -0.116 6.116 20 C -0.608 4.608 21 H 0.065 0.935 22 C 0.036 3.964 23 N -0.883 5.883 24 Si 1.084 2.916 25 H -0.277 1.277 26 H -0.285 1.285 27 H -0.285 1.285 28 C 0.118 3.882 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.400 0.600 39 H 0.058 0.942 40 H 0.061 0.939 41 H 0.070 0.930 42 H 0.078 0.922 43 H 0.082 0.918 44 H 0.070 0.930 45 H 0.070 0.930 46 H 0.091 0.909 47 H 0.091 0.909 48 H 0.278 0.722 49 H 0.069 0.931 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.962 -22.181 -8.254 33.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.143 4.143 4 C -0.181 4.181 5 C 0.299 3.701 6 O -0.415 6.415 7 N -0.378 5.378 8 C 0.049 3.951 9 H 0.110 0.890 10 C -0.224 4.224 11 C -0.131 4.131 12 H 0.110 0.890 13 C -0.161 4.161 14 C -0.023 4.023 15 N -0.363 5.363 16 C 0.336 3.664 17 O -0.389 6.389 18 C -0.275 4.275 19 S 0.110 5.890 20 C -0.756 4.756 21 H 0.084 0.916 22 C -0.175 4.175 23 N -0.517 5.517 24 Si 0.910 3.090 25 H -0.202 1.202 26 H -0.211 1.211 27 H -0.211 1.211 28 C -0.005 4.005 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.234 0.766 39 H 0.077 0.923 40 H 0.080 0.920 41 H 0.089 0.911 42 H 0.097 0.903 43 H 0.100 0.900 44 H 0.088 0.912 45 H 0.088 0.912 46 H 0.109 0.891 47 H 0.110 0.890 48 H 0.090 0.910 49 H 0.087 0.913 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -22.910 -19.617 -8.546 31.349 hybrid contribution -1.114 -2.112 0.228 2.399 sum -24.024 -21.729 -8.318 33.444 Atomic orbital electron populations 1.21762 0.95647 1.01596 1.02077 1.21550 0.96234 0.96519 1.01974 1.21379 0.92604 0.96676 1.03685 1.21716 0.98296 0.93744 1.04392 1.20777 0.82058 0.91824 0.75439 1.90725 1.55236 1.46549 1.49008 1.46100 1.07175 1.08659 1.75900 1.20862 0.93877 0.83157 0.97172 0.88979 1.22214 1.02477 1.01871 0.95832 1.22678 0.96130 0.97707 0.96583 0.88996 1.22678 0.98114 1.00711 0.94618 1.22010 0.97565 0.88449 0.94242 1.48452 1.29438 1.30809 1.27624 1.20000 0.79506 0.80278 0.86645 1.90713 1.71642 1.32384 1.44208 1.23288 1.00168 1.05723 0.98318 1.84829 1.29861 1.36864 1.37450 1.23693 1.18575 1.21124 1.12188 0.91635 1.26053 0.95377 0.92957 1.03080 1.70798 1.40165 1.25569 1.15206 0.83331 0.75940 0.76046 0.73689 1.20246 1.21135 1.21140 1.22080 0.91682 0.94982 0.91775 0.92656 0.92747 0.92615 0.92013 0.91968 0.91165 0.91225 0.88935 0.88882 0.76613 0.92261 0.91967 0.91101 0.90293 0.89970 0.91157 0.91151 0.89057 0.89040 0.90983 0.91316 0.89998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 9.91 37.16 0.37 -0.34 16 2 C -0.13 -0.54 5.93 -26.73 -0.16 -0.70 16 3 C -0.11 -0.61 4.50 -26.73 -0.12 -0.74 16 4 C -0.14 -0.65 5.70 -27.88 -0.16 -0.80 16 5 C 0.51 3.93 7.79 -10.99 -0.09 3.84 16 6 O -0.54 -6.48 15.65 5.55 0.09 -6.39 16 7 N -0.73 -4.20 4.86 -53.80 -0.26 -4.46 16 8 C 0.15 1.14 2.08 -67.93 -0.14 1.00 16 9 H 0.09 0.86 7.57 -51.93 -0.39 0.47 16 10 C -0.17 -1.27 9.21 37.16 0.34 -0.93 16 11 C -0.11 -0.83 2.63 -88.47 -0.23 -1.06 16 12 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 13 C -0.12 -0.86 6.21 -24.90 -0.15 -1.02 16 14 C 0.10 1.02 6.48 -3.07 -0.02 1.00 16 15 N -0.63 -8.76 3.33 -170.53 -0.57 -9.32 16 16 C 0.55 10.52 7.87 -10.98 -0.09 10.43 16 17 O -0.52 -11.90 16.12 5.56 0.09 -11.81 16 18 C -0.12 -2.55 5.35 36.01 0.19 -2.36 16 19 S -0.12 -3.16 19.60 -107.50 -2.11 -5.27 16 20 C -0.61 -17.55 9.50 30.94 0.29 -17.26 16 21 H 0.07 1.81 7.80 -52.48 -0.41 1.40 16 22 C 0.04 1.04 5.49 -17.43 -0.10 0.95 16 23 N -0.88 -27.54 13.67 55.49 0.76 -26.78 16 24 Si 1.08 24.86 29.92 -169.99 -5.09 19.78 16 25 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 26 H -0.29 -6.19 7.11 56.52 0.40 -5.79 16 27 H -0.29 -6.17 7.11 56.52 0.40 -5.77 16 28 C 0.12 1.33 5.48 -2.53 -0.01 1.32 16 29 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.05 0.22 8.14 -51.93 -0.42 -0.21 16 31 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.07 0.50 8.10 -51.93 -0.42 0.08 16 35 H 0.07 0.49 8.10 -51.93 -0.42 0.07 16 36 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 37 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 38 H 0.40 1.27 8.60 -40.82 -0.35 0.92 16 39 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.07 0.56 7.58 -51.93 -0.39 0.17 16 42 H 0.08 0.57 8.03 -51.93 -0.42 0.16 16 43 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 44 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 46 H 0.09 1.75 8.14 -51.92 -0.42 1.32 16 47 H 0.09 1.77 8.14 -51.92 -0.42 1.35 16 48 H 0.28 8.86 7.12 -40.82 -0.29 8.56 16 49 H 0.07 0.77 8.04 -51.93 -0.42 0.35 16 50 H 0.08 1.01 8.04 -51.93 -0.42 0.59 16 LS Contribution 419.71 15.07 6.32 6.32 Total: -1.00 -37.13 419.71 -9.90 -47.03 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -9.07 Total: -2.42 kcal Atomic # 6 Polarization: -6.61 SS G_CDS: -0.07 Total: -6.68 kcal Atomic # 7 Polarization: -40.49 SS G_CDS: -0.07 Total: -40.56 kcal Atomic # 8 Polarization: -18.38 SS G_CDS: 0.18 Total: -18.20 kcal Atomic # 14 Polarization: 24.86 SS G_CDS: -5.09 Total: 19.78 kcal Atomic # 16 Polarization: -3.16 SS G_CDS: -2.11 Total: -5.27 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -37.13 -9.90 -47.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050097255.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.928 kcal (2) G-P(sol) polarization free energy of solvation -37.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds