Wall clock time and date at job start Wed Apr 1 2020 01:29:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47131 * 2 1 4 4 C 1.53006 * 109.47127 * 179.97438 * 3 2 1 5 5 C 1.50698 * 109.47184 * 180.02562 * 4 3 2 6 6 O 1.21282 * 120.00025 * 359.97438 * 5 4 3 7 7 N 1.34776 * 120.00035 * 180.02562 * 5 4 3 8 8 C 1.47018 * 125.64727 * 359.68700 * 7 5 4 9 9 C 1.54317 * 107.27322 * 180.97112 * 8 7 5 10 10 C 1.55151 * 102.86592 * 22.52498 * 9 8 7 11 11 H 1.09003 * 111.03601 * 82.38963 * 10 9 8 12 12 C 1.53001 * 111.00689 * 206.22682 * 10 9 8 13 13 C 1.52999 * 109.47150 * 287.19718 * 12 10 9 14 14 N 1.46499 * 109.46712 * 179.97438 * 13 12 10 15 15 C 1.34778 * 119.99564 * 179.97438 * 14 13 12 16 16 O 1.21285 * 120.00200 * 359.97438 * 15 14 13 17 17 C 1.50702 * 120.00155 * 180.02562 * 15 14 13 18 18 S 1.80996 * 109.47426 * 179.97438 * 17 15 14 19 19 C 1.76206 * 100.00034 * 179.97438 * 18 17 15 20 20 H 1.07995 * 119.99922 * 0.02562 * 19 18 17 21 21 C 1.38790 * 119.99940 * 180.02562 * 19 18 17 22 22 N 1.31637 * 120.00342 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 120.00057 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47248 * 89.99759 * 23 21 19 25 25 H 1.48501 * 109.47085 * 209.99874 * 23 21 19 26 26 H 1.48497 * 109.46806 * 329.99664 * 23 21 19 27 27 C 1.47425 * 125.64555 * 179.97438 * 7 5 4 28 28 H 1.09001 * 109.46997 * 60.00426 * 1 2 3 29 29 H 1.09000 * 109.47054 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47380 * 300.00763 * 1 2 3 31 31 H 1.08996 * 109.47452 * 240.00000 * 2 1 3 32 32 H 1.09001 * 109.46997 * 119.99574 * 2 1 3 33 33 H 1.09001 * 109.47502 * 60.00153 * 3 2 1 34 34 H 1.09001 * 109.47289 * 299.99950 * 3 2 1 35 35 H 1.09001 * 109.47002 * 299.99574 * 4 3 2 36 36 H 1.08993 * 109.46955 * 60.00011 * 4 3 2 37 37 H 1.09001 * 109.88201 * 300.51277 * 8 7 5 38 38 H 1.08999 * 109.88641 * 61.68123 * 8 7 5 39 39 H 1.08997 * 110.92484 * 264.10852 * 9 8 7 40 40 H 1.09004 * 110.74179 * 140.85975 * 9 8 7 41 41 H 1.09001 * 109.46724 * 47.19609 * 12 10 9 42 42 H 1.08996 * 109.47255 * 167.19457 * 12 10 9 43 43 H 1.08996 * 109.47247 * 300.00051 * 13 12 10 44 44 H 1.09005 * 109.47014 * 59.99769 * 13 12 10 45 45 H 0.96996 * 120.00342 * 0.02562 * 14 13 12 46 46 H 1.08996 * 109.47204 * 300.00263 * 17 15 14 47 47 H 1.09005 * 109.47083 * 59.99997 * 17 15 14 48 48 H 0.97002 * 120.00130 * 180.02562 * 22 21 19 49 49 H 1.08994 * 110.37041 * 274.66715 * 27 7 5 50 50 H 1.08999 * 110.36772 * 36.88976 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0724 2.8633 0.0013 6 8 3.2843 3.7851 0.0008 7 7 5.3974 3.1095 0.0014 8 6 6.4581 2.0915 0.0075 9 6 7.8089 2.8373 0.0301 10 6 7.4286 4.2232 0.6149 11 1 7.3790 4.1884 1.7032 12 6 8.4069 5.3028 0.1477 13 6 9.7449 5.1250 0.8681 14 7 10.6817 6.1584 0.4202 15 6 11.9312 6.1990 0.9236 16 8 12.2800 5.3804 1.7478 17 6 12.8949 7.2624 0.4634 18 16 14.4773 7.0529 1.3166 19 6 15.3855 8.3867 0.6090 20 1 14.9183 9.0306 -0.1215 21 6 16.7011 8.6100 0.9903 22 7 17.2704 7.8256 1.8811 23 14 17.6637 10.0245 0.2407 24 1 17.4780 11.2433 1.0685 25 1 19.1057 9.6725 0.1945 26 1 17.1727 10.2822 -1.1369 27 6 6.0232 4.4444 0.0015 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6766 1.9563 -0.8900 35 1 3.9330 0.9288 0.8909 36 1 3.9337 0.9285 -0.8891 37 1 6.3643 1.4637 0.8936 38 1 6.3898 1.4795 -0.8919 39 1 8.2131 2.9414 -0.9768 40 1 8.5208 2.3271 0.6790 41 1 8.5588 5.2144 -0.9281 42 1 7.9986 6.2870 0.3773 43 1 9.5929 5.2133 1.9438 44 1 10.1531 4.1407 0.6384 45 1 10.4025 6.8138 -0.2381 46 1 13.0471 7.1739 -0.6122 47 1 12.4864 8.2467 0.6927 48 1 18.1898 7.9819 2.1479 49 1 6.1091 4.8232 -1.0169 50 1 5.4442 5.1348 0.6148 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001059170352.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:29:43 Heat of formation + Delta-G solvation = -105.214465 kcal Electronic energy + Delta-G solvation = -25959.519751 eV Core-core repulsion = 22111.603348 eV Total energy + Delta-G solvation = -3847.916402 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.176 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.58284 -39.23627 -38.27034 -35.78237 -35.33890 -33.11278 -32.43699 -31.11054 -30.37804 -29.52857 -27.81459 -25.53972 -25.21920 -23.36721 -23.03174 -21.51640 -20.93801 -20.16444 -19.52742 -17.86065 -17.49650 -16.89337 -16.38529 -16.15914 -15.88672 -15.59052 -15.52831 -14.82036 -14.81008 -14.40566 -14.24383 -14.03235 -13.79753 -13.64903 -13.42008 -13.16638 -13.06010 -12.74286 -12.64195 -12.55112 -12.46038 -12.06075 -11.81349 -11.77791 -11.62910 -11.47817 -11.41720 -11.14673 -11.07161 -11.04418 -11.03438 -10.97917 -10.76711 -10.20523 -9.82554 -9.42551 -9.08567 -9.07971 -8.90815 -8.24880 -6.51128 -6.22659 -3.93357 2.24627 2.51855 3.02649 3.08335 3.21726 3.27403 3.31446 3.68206 3.86833 4.08974 4.19598 4.25189 4.33594 4.36028 4.46037 4.66159 4.73005 4.80688 4.82334 4.87833 4.94320 4.99369 5.06132 5.12632 5.13979 5.19464 5.23108 5.32108 5.33992 5.36363 5.36965 5.45251 5.47703 5.52493 5.60244 5.67612 5.72009 5.78254 5.82880 5.86192 5.90055 5.91822 5.94825 6.12797 6.59336 7.07408 7.58618 7.68470 7.76427 8.34259 8.59520 9.22779 10.84798 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.053030 B = 0.001278 C = 0.001260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.875173 B =21910.261391 C =22215.235659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.106 4.106 4 C -0.136 4.136 5 C 0.526 3.474 6 O -0.541 6.541 7 N -0.622 5.622 8 C 0.100 3.900 9 C -0.131 4.131 10 C -0.097 4.097 11 H 0.091 0.909 12 C -0.120 4.120 13 C 0.122 3.878 14 N -0.740 5.740 15 C 0.531 3.469 16 O -0.518 6.518 17 C -0.154 4.154 18 S -0.061 6.061 19 C -0.536 4.536 20 H 0.073 0.927 21 C 0.074 3.926 22 N -0.868 5.868 23 Si 0.918 3.082 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 C 0.110 3.890 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.081 0.919 40 H 0.088 0.912 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.065 0.935 44 H 0.066 0.934 45 H 0.398 0.602 46 H 0.089 0.911 47 H 0.089 0.911 48 H 0.268 0.732 49 H 0.070 0.930 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.648 -14.489 -6.422 33.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.144 4.144 4 C -0.176 4.176 5 C 0.316 3.684 6 O -0.418 6.418 7 N -0.357 5.357 8 C -0.023 4.023 9 C -0.169 4.169 10 C -0.117 4.117 11 H 0.109 0.891 12 C -0.158 4.158 13 C -0.002 4.002 14 N -0.395 5.395 15 C 0.317 3.683 16 O -0.392 6.392 17 C -0.305 4.305 18 S 0.166 5.834 19 C -0.684 4.684 20 H 0.091 0.909 21 C -0.135 4.135 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.203 1.203 25 H -0.207 1.207 26 H -0.197 1.197 27 C -0.013 4.013 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.111 0.889 36 H 0.110 0.890 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.100 0.900 40 H 0.107 0.893 41 H 0.093 0.907 42 H 0.094 0.906 43 H 0.084 0.916 44 H 0.085 0.915 45 H 0.232 0.768 46 H 0.108 0.892 47 H 0.108 0.892 48 H 0.078 0.922 49 H 0.088 0.912 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -29.420 -15.448 -4.938 33.594 hybrid contribution 0.227 2.116 -1.754 2.757 sum -29.192 -13.333 -6.692 32.783 Atomic orbital electron populations 1.21761 0.95616 1.01611 1.02063 1.21543 0.96236 0.96443 1.02019 1.21397 0.92553 0.96760 1.03670 1.21691 0.98113 0.93436 1.04345 1.20483 0.80289 0.91949 0.75699 1.90718 1.54320 1.46804 1.49972 1.48562 1.05201 1.08208 1.73718 1.22085 0.86976 0.91352 1.01917 1.22787 0.95878 0.95472 1.02732 1.22308 0.93468 0.94763 1.01139 0.89107 1.21718 0.94126 0.99099 1.00906 1.21243 0.87914 0.92043 0.98999 1.46003 1.12958 1.33957 1.46600 1.20313 0.81601 0.85474 0.80887 1.90702 1.76531 1.40085 1.31907 1.23535 1.02106 0.99692 1.05125 1.85392 1.00573 1.42271 1.55179 1.22870 1.00029 1.16361 1.29151 0.90928 1.24985 0.96601 0.96988 0.94944 1.70020 1.13678 1.36973 1.29652 0.86173 0.78776 0.81213 0.79371 1.20259 1.20735 1.19690 1.22270 0.92659 0.85086 1.01240 0.92647 0.92717 0.92631 0.91972 0.91944 0.91180 0.91204 0.88918 0.88956 0.91107 0.91188 0.90010 0.89306 0.90737 0.90648 0.91629 0.91526 0.76828 0.89227 0.89223 0.92175 0.91223 0.90247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 9.91 37.16 0.37 -0.35 16 2 C -0.12 -0.57 5.93 -26.73 -0.16 -0.73 16 3 C -0.11 -0.66 4.50 -26.73 -0.12 -0.78 16 4 C -0.14 -0.76 4.89 -27.88 -0.14 -0.90 16 5 C 0.53 4.78 7.85 -10.99 -0.09 4.70 16 6 O -0.54 -7.08 16.24 5.56 0.09 -6.99 16 7 N -0.62 -4.67 3.33 -170.52 -0.57 -5.24 16 8 C 0.10 0.48 6.48 -3.07 -0.02 0.46 16 9 C -0.13 -0.66 5.91 -24.90 -0.15 -0.81 16 10 C -0.10 -0.59 3.00 -88.46 -0.27 -0.85 16 11 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 12 C -0.12 -0.78 4.84 -26.73 -0.13 -0.91 16 13 C 0.12 1.23 5.58 -4.04 -0.02 1.21 16 14 N -0.74 -9.18 5.56 -60.29 -0.33 -9.52 16 15 C 0.53 9.63 7.85 -10.98 -0.09 9.54 16 16 O -0.52 -11.53 15.86 5.55 0.09 -11.45 16 17 C -0.15 -3.04 6.16 36.01 0.22 -2.82 16 18 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 19 C -0.54 -15.18 9.50 30.94 0.29 -14.88 16 20 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 21 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 22 N -0.87 -26.06 13.22 55.49 0.73 -25.32 16 23 Si 0.92 21.26 29.55 -169.99 -5.02 16.24 16 24 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 25 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 26 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 27 C 0.11 0.81 6.38 -2.52 -0.02 0.79 16 28 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.05 0.22 8.14 -51.93 -0.42 -0.21 16 30 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.07 0.53 8.10 -51.93 -0.42 0.10 16 34 H 0.07 0.52 8.10 -51.93 -0.42 0.10 16 35 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 39 H 0.08 0.40 7.91 -51.93 -0.41 -0.01 16 40 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.07 0.43 7.97 -51.93 -0.41 0.02 16 42 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.07 0.72 7.75 -51.93 -0.40 0.31 16 45 H 0.40 3.75 8.47 -40.82 -0.35 3.40 16 46 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 47 H 0.09 1.64 8.14 -51.91 -0.42 1.21 16 48 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 49 H 0.07 0.50 8.04 -51.93 -0.42 0.08 16 50 H 0.08 0.68 8.03 -51.93 -0.42 0.26 16 LS Contribution 422.54 15.07 6.37 6.37 Total: -1.00 -36.65 422.54 -10.39 -47.05 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -9.13 Total: -2.96 kcal Atomic # 6 Polarization: -3.93 SS G_CDS: -0.40 Total: -4.33 kcal Atomic # 7 Polarization: -39.91 SS G_CDS: -0.17 Total: -40.08 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: 0.18 Total: -18.44 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 6.37 Total: 6.37 kcal Total: -36.65 -10.39 -47.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001059170352.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.167 kcal (2) G-P(sol) polarization free energy of solvation -36.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds