Wall clock time and date at job start Wed Apr 1 2020 01:38:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46902 * 2 1 4 4 C 1.53005 * 109.47196 * 119.99656 * 2 1 3 5 5 C 1.50698 * 109.46890 * 175.00396 * 4 2 1 6 6 O 1.21275 * 120.00349 * 0.02562 * 5 4 2 7 7 N 1.34782 * 119.99472 * 180.02562 * 5 4 2 8 8 C 1.46499 * 119.99661 * 179.97438 * 7 5 4 9 9 C 1.53005 * 109.46752 * 179.97438 * 8 7 5 10 10 C 1.53002 * 109.46881 * 180.02562 * 9 8 7 11 11 H 1.09002 * 110.88576 * 57.42721 * 10 9 8 12 12 C 1.55151 * 111.00571 * 181.35215 * 10 9 8 13 13 C 1.54338 * 103.02507 * 153.38046 * 12 10 9 14 14 N 1.47021 * 107.26155 * 338.14263 * 13 12 10 15 15 C 1.34781 * 125.64992 * 178.84864 * 14 13 12 16 16 O 1.21274 * 120.00344 * 179.69253 * 15 14 13 17 17 C 1.50701 * 119.99423 * 359.69048 * 15 14 13 18 18 S 1.81001 * 109.46896 * 180.02562 * 17 15 14 19 19 C 1.76201 * 99.99894 * 180.02562 * 18 17 15 20 20 H 1.07991 * 120.00323 * 359.97438 * 19 18 17 21 21 C 1.38805 * 119.99766 * 179.97438 * 19 18 17 22 22 N 1.31633 * 120.00034 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99929 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46807 * 179.97438 * 23 21 19 25 25 H 1.48497 * 109.46906 * 300.00462 * 23 21 19 26 26 H 1.48498 * 109.47018 * 60.00200 * 23 21 19 27 27 C 1.47422 * 108.70588 * 358.58342 * 14 13 12 28 28 H 1.08994 * 109.47436 * 300.00270 * 1 2 3 29 29 H 1.08998 * 109.46964 * 60.00933 * 1 2 3 30 30 H 1.09004 * 109.46698 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47436 * 239.99730 * 2 1 3 32 32 H 1.09002 * 109.47075 * 299.99833 * 3 2 1 33 33 H 1.08994 * 109.47296 * 59.99644 * 3 2 1 34 34 H 1.09001 * 109.47210 * 179.97438 * 3 2 1 35 35 H 1.08996 * 109.46651 * 55.00100 * 4 2 1 36 36 H 1.09000 * 109.46937 * 295.00673 * 4 2 1 37 37 H 0.97000 * 120.00072 * 359.97438 * 7 5 4 38 38 H 1.09006 * 109.46925 * 60.00617 * 8 7 5 39 39 H 1.08992 * 109.47367 * 300.00036 * 8 7 5 40 40 H 1.08995 * 109.47200 * 60.00709 * 9 8 7 41 41 H 1.08995 * 109.47162 * 299.99810 * 9 8 7 42 42 H 1.09003 * 110.72492 * 271.94110 * 12 10 9 43 43 H 1.09003 * 110.72257 * 35.03545 * 12 10 9 44 44 H 1.08996 * 109.99183 * 218.66499 * 13 12 10 45 45 H 1.08998 * 109.77679 * 97.49207 * 13 12 10 46 46 H 1.09001 * 109.47454 * 60.00304 * 17 15 14 47 47 H 1.09003 * 109.47322 * 299.99933 * 17 15 14 48 48 H 0.97001 * 119.99662 * 179.97438 * 22 21 19 49 49 H 1.09003 * 110.37421 * 143.19407 * 27 14 13 50 50 H 1.08997 * 110.36947 * 265.51777 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.8292 1.1889 6 8 4.1450 -0.3738 0.2405 7 7 4.2149 -1.4320 2.1892 8 6 5.6749 -1.5375 2.1303 9 6 6.1848 -2.2586 3.3797 10 6 7.7097 -2.3683 3.3185 11 1 8.1667 -1.3830 3.2261 12 6 8.2629 -3.1252 4.5546 13 6 9.5827 -3.7297 4.0304 14 7 9.4803 -3.7966 2.5653 15 6 10.4385 -4.2457 1.7306 16 8 10.2420 -4.2608 0.5340 17 6 11.7540 -4.7292 2.2844 18 16 12.8218 -5.2626 0.9237 19 6 14.2468 -5.7631 1.8313 20 1 14.2568 -5.6831 2.9082 21 6 15.3565 -6.2603 1.1620 22 7 15.3446 -6.3574 -0.1507 23 14 16.8676 -6.7902 2.1240 24 1 17.9063 -7.2810 1.1831 25 1 17.3983 -5.6333 2.8888 26 1 16.4988 -7.8783 3.0649 27 6 8.1536 -3.2970 2.1608 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9563 0.8899 34 1 3.1299 1.4426 0.0005 35 1 1.6054 -1.7197 1.2952 36 1 1.7516 -0.1582 2.1370 37 1 3.7325 -1.7959 2.9480 38 1 6.1097 -0.5390 2.0846 39 1 5.9629 -2.1003 1.2425 40 1 5.7500 -3.2570 3.4258 41 1 5.8968 -1.6954 4.2672 42 1 8.4519 -2.4350 5.3768 43 1 7.5755 -3.9125 4.8643 44 1 9.7220 -4.7307 4.4385 45 1 10.4192 -3.0914 4.3148 46 1 11.5784 -5.5672 2.9589 47 1 12.2384 -3.9191 2.8297 48 1 16.1203 -6.7045 -0.6184 49 1 8.2276 -2.7343 1.2302 50 1 7.4540 -4.1254 2.0495 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001059198310.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:38:12 Heat of formation + Delta-G solvation = -99.605053 kcal Electronic energy + Delta-G solvation = -26543.712432 eV Core-core repulsion = 22696.039272 eV Total energy + Delta-G solvation = -3847.673160 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.176 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.29953 -39.81671 -37.66912 -36.27548 -35.31569 -33.09107 -32.41786 -30.50628 -29.60372 -28.77588 -27.45843 -26.94748 -25.47559 -24.15435 -22.48685 -21.41520 -20.66777 -20.04647 -19.32337 -17.71575 -17.47044 -16.64824 -16.56229 -16.22914 -16.04424 -15.40106 -15.03371 -14.79661 -14.59900 -14.30687 -14.20923 -13.95284 -13.88429 -13.59535 -13.26671 -12.81374 -12.70841 -12.66049 -12.56263 -12.50415 -12.36919 -12.26782 -11.85435 -11.74887 -11.51218 -11.37254 -11.24137 -11.07140 -11.04064 -11.03382 -10.95574 -10.95101 -10.75771 -10.01695 -9.81401 -9.41257 -9.38520 -9.04907 -8.49367 -8.22418 -6.49176 -6.20287 -3.91166 2.33711 2.78882 2.93972 3.07990 3.24053 3.26577 3.29953 3.62946 4.08982 4.21606 4.27834 4.33556 4.39225 4.42478 4.50125 4.73794 4.79915 4.89537 5.01276 5.05454 5.08824 5.11167 5.13429 5.14608 5.20305 5.24884 5.31294 5.34152 5.47537 5.52095 5.52806 5.58929 5.61872 5.64557 5.65875 5.73470 5.77721 5.82909 5.95615 5.96445 5.99109 6.02279 6.14808 6.16243 6.44019 7.12227 7.60023 7.68518 7.91417 8.36008 8.57475 9.24578 10.87088 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.026046 B = 0.001564 C = 0.001497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.768230 B =17893.677093 C =18697.000117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.082 4.082 3 C -0.154 4.154 4 C -0.137 4.137 5 C 0.509 3.491 6 O -0.532 6.532 7 N -0.734 5.734 8 C 0.114 3.886 9 C -0.117 4.117 10 C -0.099 4.099 11 H 0.090 0.910 12 C -0.124 4.124 13 C 0.101 3.899 14 N -0.627 5.627 15 C 0.547 3.453 16 O -0.515 6.515 17 C -0.146 4.146 18 S -0.061 6.061 19 C -0.536 4.536 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.283 1.283 25 H -0.274 1.274 26 H -0.274 1.274 27 C 0.110 3.890 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.078 0.922 32 H 0.052 0.948 33 H 0.046 0.954 34 H 0.074 0.926 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.399 0.601 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.082 0.918 43 H 0.077 0.923 44 H 0.069 0.931 45 H 0.069 0.931 46 H 0.088 0.912 47 H 0.088 0.912 48 H 0.269 0.731 49 H 0.079 0.921 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.383 11.813 12.354 33.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.101 4.101 3 C -0.211 4.211 4 C -0.177 4.177 5 C 0.296 3.704 6 O -0.409 6.409 7 N -0.387 5.387 8 C -0.010 4.010 9 C -0.155 4.155 10 C -0.119 4.119 11 H 0.108 0.892 12 C -0.162 4.162 13 C -0.022 4.022 14 N -0.365 5.365 15 C 0.336 3.664 16 O -0.389 6.389 17 C -0.297 4.297 18 S 0.166 5.834 19 C -0.684 4.684 20 H 0.090 0.910 21 C -0.135 4.135 22 N -0.502 5.502 23 Si 0.745 3.255 24 H -0.208 1.208 25 H -0.199 1.199 26 H -0.200 1.200 27 C -0.013 4.013 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.097 0.903 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.093 0.907 35 H 0.111 0.889 36 H 0.110 0.890 37 H 0.233 0.767 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.093 0.907 42 H 0.101 0.899 43 H 0.096 0.904 44 H 0.087 0.913 45 H 0.087 0.913 46 H 0.107 0.893 47 H 0.107 0.893 48 H 0.079 0.921 49 H 0.097 0.903 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -29.038 12.032 9.641 32.878 hybrid contribution 1.013 -0.585 2.544 2.800 sum -28.026 11.448 12.185 32.633 Atomic orbital electron populations 1.21866 0.94928 1.01735 1.02023 1.20873 0.95074 0.96973 0.97195 1.21963 1.03170 0.94941 1.01046 1.21787 0.91850 1.03022 1.01060 1.20773 0.90259 0.77329 0.82073 1.90709 1.70420 1.46777 1.32953 1.46073 1.08002 1.60568 1.24024 1.21443 0.79446 1.01263 0.98808 1.21717 0.94807 1.01371 0.97637 1.22313 0.94559 0.99709 0.95339 0.89211 1.22680 0.96299 0.99858 0.97394 1.21987 0.98218 1.01243 0.80761 1.48500 1.15359 1.65785 1.06862 1.20036 0.84141 0.76366 0.85857 1.90714 1.79941 1.53470 1.14771 1.23506 0.96261 1.03697 1.06224 1.85416 1.10297 1.81879 1.05817 1.22818 1.00923 1.49564 0.95128 0.91000 1.24990 0.98404 0.95049 0.95082 1.70013 1.30468 1.42990 1.06777 0.86224 0.80965 0.78968 0.79339 1.20792 1.19938 1.19952 1.22239 0.84382 0.96665 0.97970 0.92684 0.92321 0.92669 0.90329 0.92872 0.93441 0.90695 0.88920 0.88973 0.76688 0.91279 0.90952 0.90761 0.90680 0.89921 0.90435 0.91256 0.91263 0.89344 0.89323 0.92122 0.90297 0.91706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 9.19 37.16 0.34 -0.37 16 2 C -0.08 -0.55 2.57 -90.62 -0.23 -0.78 16 3 C -0.15 -1.17 8.93 37.16 0.33 -0.84 16 4 C -0.14 -0.72 5.17 -27.88 -0.14 -0.87 16 5 C 0.51 4.31 7.55 -10.98 -0.08 4.22 16 6 O -0.53 -6.87 13.96 5.56 0.08 -6.80 16 7 N -0.73 -4.54 5.56 -60.29 -0.33 -4.88 16 8 C 0.11 0.84 5.52 -4.04 -0.02 0.82 16 9 C -0.12 -0.61 4.84 -26.73 -0.13 -0.74 16 10 C -0.10 -0.75 3.08 -88.47 -0.27 -1.02 16 11 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 12 C -0.12 -0.85 6.42 -24.89 -0.16 -1.01 16 13 C 0.10 1.05 6.49 -3.06 -0.02 1.03 16 14 N -0.63 -9.14 3.33 -170.52 -0.57 -9.71 16 15 C 0.55 10.88 7.87 -10.98 -0.09 10.79 16 16 O -0.51 -12.35 16.12 5.56 0.09 -12.26 16 17 C -0.15 -3.07 5.35 36.01 0.19 -2.87 16 18 S -0.06 -1.68 20.57 -107.50 -2.21 -3.90 16 19 C -0.54 -15.43 9.50 30.94 0.29 -15.14 16 20 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 21 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 22 N -0.87 -26.39 13.22 55.49 0.73 -25.66 16 23 Si 0.92 21.50 29.55 -169.99 -5.02 16.48 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 25 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 26 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 27 C 0.11 1.30 5.56 -2.53 -0.01 1.28 16 28 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.08 0.66 7.95 -51.93 -0.41 0.25 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.07 0.76 5.95 -51.93 -0.31 0.45 16 35 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.40 1.21 8.47 -40.82 -0.35 0.87 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.69 7.46 -51.93 -0.39 0.30 16 40 H 0.07 0.35 8.10 -51.93 -0.42 -0.07 16 41 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 42 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.08 0.45 8.04 -51.93 -0.42 0.03 16 44 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.09 1.72 8.14 -51.92 -0.42 1.29 16 47 H 0.09 1.72 8.14 -51.91 -0.42 1.30 16 48 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 49 H 0.08 1.07 7.96 -51.93 -0.41 0.66 16 50 H 0.06 0.73 8.00 -51.93 -0.42 0.32 16 LS Contribution 417.36 15.07 6.29 6.29 Total: -1.00 -37.41 417.36 -10.05 -47.46 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: -9.01 Total: -3.59 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: -0.10 Total: -3.45 kcal Atomic # 7 Polarization: -40.08 SS G_CDS: -0.17 Total: -40.25 kcal Atomic # 8 Polarization: -19.22 SS G_CDS: 0.17 Total: -19.05 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -37.41 -10.05 -47.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001059198310.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.140 kcal (2) G-P(sol) polarization free energy of solvation -37.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds