Wall clock time and date at job start Wed Apr 1 2020 01:29:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47296 * 2 1 4 4 C 1.53000 * 109.47092 * 239.99681 * 2 1 3 5 5 C 1.50703 * 109.47073 * 120.00103 * 2 1 3 6 6 O 1.21273 * 120.00019 * 355.88201 * 5 2 1 7 7 N 1.34779 * 120.00114 * 175.88619 * 5 2 1 8 8 C 1.47029 * 125.64662 * 354.36244 * 7 5 2 9 9 C 1.54319 * 107.27199 * 181.09382 * 8 7 5 10 10 C 1.55161 * 103.09913 * 22.10566 * 9 8 7 11 11 H 1.09000 * 111.00883 * 82.66029 * 10 9 8 12 12 C 1.53003 * 111.00339 * 206.50962 * 10 9 8 13 13 C 1.53001 * 109.47381 * 293.54666 * 12 10 9 14 14 N 1.46497 * 109.47302 * 179.97438 * 13 12 10 15 15 C 1.34776 * 120.00110 * 180.02562 * 14 13 12 16 16 O 1.21276 * 119.99900 * 0.02562 * 15 14 13 17 17 C 1.50697 * 119.99926 * 180.02562 * 15 14 13 18 18 S 1.81007 * 109.47104 * 179.97438 * 17 15 14 19 19 C 1.76200 * 99.99984 * 180.02562 * 18 17 15 20 20 H 1.07995 * 120.00099 * 359.97438 * 19 18 17 21 21 C 1.38794 * 119.99579 * 180.02562 * 19 18 17 22 22 N 1.31632 * 120.00332 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99545 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47530 * 359.97438 * 23 21 19 25 25 H 1.48508 * 109.47185 * 120.00044 * 23 21 19 26 26 H 1.48506 * 109.47026 * 239.99640 * 23 21 19 27 27 C 1.47416 * 125.65075 * 174.40563 * 7 5 2 28 28 H 1.09006 * 109.47118 * 300.00320 * 1 2 3 29 29 H 1.08997 * 109.47260 * 59.99675 * 1 2 3 30 30 H 1.08989 * 109.47504 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46926 * 185.85277 * 3 2 1 32 32 H 1.09004 * 109.46893 * 305.84715 * 3 2 1 33 33 H 1.09001 * 109.47422 * 65.84972 * 3 2 1 34 34 H 1.08994 * 109.47480 * 284.00650 * 4 2 1 35 35 H 1.09005 * 109.46708 * 44.01266 * 4 2 1 36 36 H 1.09003 * 109.47182 * 164.00715 * 4 2 1 37 37 H 1.08998 * 109.87955 * 61.67536 * 8 7 5 38 38 H 1.09005 * 109.87973 * 300.51535 * 8 7 5 39 39 H 1.09000 * 110.71930 * 140.55337 * 9 8 7 40 40 H 1.08997 * 110.72564 * 263.65625 * 9 8 7 41 41 H 1.09008 * 109.46923 * 53.54541 * 12 10 9 42 42 H 1.08998 * 109.47130 * 173.54412 * 12 10 9 43 43 H 1.08998 * 109.46995 * 300.00397 * 13 12 10 44 44 H 1.09004 * 109.46862 * 59.99504 * 13 12 10 45 45 H 0.97004 * 119.99976 * 0.02562 * 14 13 12 46 46 H 1.08999 * 109.46971 * 299.99891 * 17 15 14 47 47 H 1.08998 * 109.47283 * 59.99700 * 17 15 14 48 48 H 0.97007 * 119.99683 * 180.02562 * 22 21 19 49 49 H 1.09001 * 110.36782 * 274.67329 * 27 7 5 50 50 H 1.08998 * 110.37019 * 36.88496 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2305 6 8 1.2468 -1.1056 2.0657 7 7 3.3546 -0.9066 1.4028 8 6 4.4031 -0.5868 0.4230 9 6 5.7526 -1.0067 1.0426 10 6 5.3392 -2.0573 2.1069 11 1 5.1987 -3.0385 1.6534 12 6 6.3642 -2.1217 3.2410 13 6 7.6887 -2.6650 2.7013 14 7 8.6703 -2.7261 3.7871 15 6 9.9172 -3.1761 3.5439 16 8 10.2267 -3.5302 2.4260 17 6 10.9266 -3.2394 4.6610 18 16 12.4937 -3.8821 4.0224 19 6 13.4601 -3.8509 5.4954 20 1 13.0247 -3.5009 6.4196 21 6 14.7813 -4.2753 5.4676 22 7 15.3121 -4.7015 4.3410 23 14 15.8061 -4.2416 7.0290 24 1 14.9825 -3.7232 8.1507 25 1 16.2681 -5.6165 7.3477 26 1 16.9828 -3.3577 6.8298 27 6 3.9890 -1.4782 2.6045 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0275 0.0005 31 1 3.1250 1.4442 -0.1048 32 1 1.5937 1.9857 -0.8330 33 1 1.7648 1.9253 0.9377 34 1 1.9266 -1.7975 -1.1191 35 1 1.4642 -0.3974 -2.1162 36 1 3.0925 -0.4828 -1.4023 37 1 4.4059 0.4840 0.2192 38 1 4.2301 -1.1413 -0.4994 39 1 6.4000 -1.4552 0.2891 40 1 6.2432 -0.1543 1.5125 41 1 6.5200 -1.1221 3.6470 42 1 5.9950 -2.7798 4.0275 43 1 7.5329 -3.6645 2.2952 44 1 8.0579 -2.0069 1.9147 45 1 8.4228 -2.4425 4.6812 46 1 11.0820 -2.2400 5.0673 47 1 10.5577 -3.8979 5.4473 48 1 16.2354 -4.9984 4.3217 49 1 4.1640 -0.7002 3.3475 50 1 3.3656 -2.2683 3.0232 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001060382084.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:29:54 Heat of formation + Delta-G solvation = -88.456357 kcal Electronic energy + Delta-G solvation = -26882.715921 eV Core-core repulsion = 23035.526205 eV Total energy + Delta-G solvation = -3847.189716 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.176 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.97918 -39.27178 -38.32231 -36.16334 -35.30053 -32.95557 -32.43928 -30.41976 -29.66852 -28.14274 -27.93237 -27.27733 -25.51044 -24.64067 -23.11889 -21.79111 -20.88764 -20.16583 -19.27998 -17.85612 -17.08443 -16.81500 -16.18738 -15.99861 -15.86061 -15.62293 -15.28957 -14.81582 -14.72196 -14.44559 -14.10397 -13.92492 -13.78176 -13.54080 -13.40483 -13.14237 -12.76805 -12.72878 -12.69493 -12.57325 -12.45861 -12.26889 -12.22436 -11.94476 -11.75740 -11.46340 -11.43350 -11.19062 -11.07988 -11.06193 -11.03029 -10.91332 -10.76336 -10.03316 -9.81681 -9.42576 -9.09000 -9.03220 -8.90624 -8.24579 -6.51292 -6.23038 -3.93566 2.24794 2.52974 3.02653 3.08377 3.20694 3.27508 3.32117 3.68119 3.83061 4.08871 4.11570 4.19253 4.28493 4.33161 4.37740 4.62814 4.71167 4.80894 4.85424 4.95341 5.00246 5.06167 5.09281 5.12374 5.18658 5.19426 5.20508 5.32995 5.33994 5.35254 5.38405 5.42543 5.46931 5.55792 5.60160 5.61533 5.69545 5.72588 5.79204 5.85183 5.90375 5.92757 5.95415 6.12771 6.59516 7.09650 7.58777 7.68574 7.77474 8.34273 8.59573 9.22574 10.84444 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.040871 B = 0.001459 C = 0.001437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.924756 B =19181.490896 C =19475.047048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.083 4.083 3 C -0.145 4.145 4 C -0.152 4.152 5 C 0.538 3.462 6 O -0.540 6.540 7 N -0.617 5.617 8 C 0.088 3.912 9 C -0.133 4.133 10 C -0.096 4.096 11 H 0.090 0.910 12 C -0.120 4.120 13 C 0.122 3.878 14 N -0.740 5.740 15 C 0.531 3.469 16 O -0.518 6.518 17 C -0.154 4.154 18 S -0.061 6.061 19 C -0.535 4.535 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 C 0.109 3.891 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.088 0.912 40 H 0.081 0.919 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.065 0.935 44 H 0.067 0.933 45 H 0.398 0.602 46 H 0.089 0.911 47 H 0.089 0.911 48 H 0.268 0.732 49 H 0.069 0.931 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.333 12.075 -8.800 32.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.086 4.086 3 C -0.202 4.202 4 C -0.210 4.210 5 C 0.327 3.673 6 O -0.416 6.416 7 N -0.351 5.351 8 C -0.034 4.034 9 C -0.171 4.171 10 C -0.116 4.116 11 H 0.108 0.892 12 C -0.158 4.158 13 C -0.002 4.002 14 N -0.395 5.395 15 C 0.317 3.683 16 O -0.392 6.392 17 C -0.304 4.304 18 S 0.165 5.835 19 C -0.684 4.684 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 C -0.013 4.013 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.097 0.903 39 H 0.107 0.893 40 H 0.099 0.901 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.084 0.916 44 H 0.085 0.915 45 H 0.232 0.768 46 H 0.108 0.892 47 H 0.108 0.892 48 H 0.078 0.922 49 H 0.087 0.913 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -28.177 11.215 -10.339 32.041 hybrid contribution 0.262 0.566 2.724 2.795 sum -27.915 11.781 -7.615 31.241 Atomic orbital electron populations 1.21675 0.91785 1.02854 1.02165 1.20761 0.97951 0.96443 0.93413 1.21977 1.01736 0.93624 1.02905 1.22146 1.02179 1.00516 0.96114 1.20338 0.80293 0.78869 0.87808 1.90702 1.54431 1.50858 1.45611 1.48423 1.05517 1.63050 1.18104 1.22534 0.87138 1.00989 0.92762 1.22814 0.95907 0.99400 0.98932 1.22318 0.93622 0.99627 0.96007 0.89169 1.21707 0.93900 1.02393 0.97813 1.21241 0.87162 1.01487 0.90317 1.46005 1.11980 1.68787 1.12739 1.20307 0.81893 0.76083 0.89980 1.90699 1.78376 1.46332 1.23836 1.23533 1.01544 1.05360 1.00001 1.85395 0.99468 1.83241 1.15363 1.22911 0.99075 1.50452 0.95917 0.90867 1.24991 0.96830 0.94524 0.97229 1.70031 1.14379 1.40383 1.25492 0.86117 0.79648 0.77966 0.81757 1.19620 1.20555 1.20565 1.22303 0.93045 0.98215 0.87735 0.91861 0.91887 0.91996 0.91520 0.91182 0.92151 0.92149 0.91280 0.90956 0.90736 0.90317 0.89323 0.90058 0.90773 0.90658 0.91642 0.91493 0.76827 0.89232 0.89224 0.92233 0.91265 0.90218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.85 7.71 37.16 0.29 -0.56 16 2 C -0.08 -0.54 0.75 -155.66 -0.12 -0.65 16 3 C -0.15 -0.72 8.27 37.16 0.31 -0.41 16 4 C -0.15 -0.74 7.69 37.16 0.29 -0.45 16 5 C 0.54 5.13 6.51 -10.98 -0.07 5.06 16 6 O -0.54 -7.26 16.21 5.56 0.09 -7.17 16 7 N -0.62 -4.75 3.32 -170.39 -0.57 -5.32 16 8 C 0.09 0.46 5.10 -3.06 -0.02 0.44 16 9 C -0.13 -0.70 5.58 -24.90 -0.14 -0.84 16 10 C -0.10 -0.59 3.08 -88.35 -0.27 -0.86 16 11 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 12 C -0.12 -0.78 4.85 -26.73 -0.13 -0.91 16 13 C 0.12 1.23 5.52 -4.04 -0.02 1.21 16 14 N -0.74 -9.17 5.56 -60.30 -0.33 -9.50 16 15 C 0.53 9.62 7.85 -10.99 -0.09 9.53 16 16 O -0.52 -11.53 15.86 5.56 0.09 -11.44 16 17 C -0.15 -3.04 6.16 36.00 0.22 -2.82 16 18 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 19 C -0.54 -15.16 9.50 30.94 0.29 -14.87 16 20 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 21 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 22 N -0.87 -26.02 13.22 55.49 0.73 -25.29 16 23 Si 0.92 21.27 29.55 -169.99 -5.02 16.25 16 24 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 25 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 27 C 0.11 0.81 6.42 -2.42 -0.02 0.80 16 28 H 0.06 0.49 8.06 -51.93 -0.42 0.07 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 31 H 0.07 0.28 5.13 -51.93 -0.27 0.01 16 32 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 0.35 8.03 -51.93 -0.42 -0.07 16 35 H 0.07 0.26 8.04 -51.93 -0.42 -0.16 16 36 H 0.07 0.27 4.98 -51.93 -0.26 0.01 16 37 H 0.07 0.31 5.59 -51.93 -0.29 0.02 16 38 H 0.08 0.35 5.71 -51.93 -0.30 0.05 16 39 H 0.09 0.45 8.13 -51.93 -0.42 0.03 16 40 H 0.08 0.42 8.01 -51.93 -0.42 0.00 16 41 H 0.07 0.44 8.11 -51.92 -0.42 0.01 16 42 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 44 H 0.07 0.72 7.51 -51.93 -0.39 0.33 16 45 H 0.40 3.74 8.47 -40.82 -0.35 3.40 16 46 H 0.09 1.63 8.14 -51.92 -0.42 1.20 16 47 H 0.09 1.64 8.14 -51.92 -0.42 1.21 16 48 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 49 H 0.07 0.49 8.03 -51.93 -0.42 0.08 16 50 H 0.08 0.69 7.98 -51.93 -0.41 0.28 16 LS Contribution 407.26 15.07 6.14 6.14 Total: -1.00 -36.64 407.26 -9.20 -45.84 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -8.54 Total: -2.30 kcal Atomic # 6 Polarization: -3.77 SS G_CDS: 0.43 Total: -3.34 kcal Atomic # 7 Polarization: -39.94 SS G_CDS: -0.17 Total: -40.11 kcal Atomic # 8 Polarization: -18.79 SS G_CDS: 0.18 Total: -18.61 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -36.64 -9.20 -45.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001060382084.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.617 kcal (2) G-P(sol) polarization free energy of solvation -36.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds