Wall clock time and date at job start Wed Apr 1 2020 01:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46880 * 2 1 4 4 C 1.52998 * 109.47257 * 240.00113 * 2 1 3 5 5 C 1.50700 * 109.46874 * 119.99652 * 2 1 3 6 6 O 1.21281 * 120.00099 * 4.08225 * 5 2 1 7 7 N 1.34779 * 119.99863 * 184.35368 * 5 2 1 8 8 C 1.47019 * 125.64944 * 4.94528 * 7 5 2 9 9 C 1.54335 * 107.26675 * 178.85133 * 8 7 5 10 10 C 1.55153 * 103.01830 * 338.14068 * 9 8 7 11 11 H 1.09003 * 111.03525 * 277.21639 * 10 9 8 12 12 C 1.53006 * 111.00337 * 153.38274 * 10 9 8 13 13 C 1.52996 * 109.47299 * 72.80288 * 12 10 9 14 14 N 1.46493 * 109.47144 * 180.02562 * 13 12 10 15 15 C 1.34782 * 119.99812 * 180.02562 * 14 13 12 16 16 O 1.21281 * 120.00074 * 359.97438 * 15 14 13 17 17 C 1.50701 * 119.99780 * 180.02562 * 15 14 13 18 18 S 1.81004 * 109.47102 * 179.97438 * 17 15 14 19 19 C 1.76198 * 99.99990 * 179.97438 * 18 17 15 20 20 H 1.07996 * 120.00123 * 0.02562 * 19 18 17 21 21 C 1.38802 * 119.99583 * 179.97438 * 19 18 17 22 22 N 1.31631 * 119.99675 * 180.02562 * 21 19 18 23 23 Si 1.86791 * 120.00451 * 0.02562 * 21 19 18 24 24 H 1.48499 * 109.47137 * 89.99732 * 23 21 19 25 25 H 1.48501 * 109.47592 * 210.00085 * 23 21 19 26 26 H 1.48501 * 109.47145 * 330.00076 * 23 21 19 27 27 C 1.47424 * 125.64509 * 185.25461 * 7 5 2 28 28 H 1.08995 * 109.47645 * 300.00081 * 1 2 3 29 29 H 1.09005 * 109.46647 * 60.00294 * 1 2 3 30 30 H 1.08998 * 109.47265 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47037 * 196.18847 * 3 2 1 32 32 H 1.08997 * 109.47265 * 316.19609 * 3 2 1 33 33 H 1.09005 * 109.47052 * 76.19321 * 3 2 1 34 34 H 1.08995 * 109.46983 * 294.25055 * 4 2 1 35 35 H 1.09000 * 109.47408 * 54.25715 * 4 2 1 36 36 H 1.09006 * 109.47093 * 174.25625 * 4 2 1 37 37 H 1.09004 * 109.88327 * 298.39514 * 8 7 5 38 38 H 1.08997 * 109.88032 * 59.55809 * 8 7 5 39 39 H 1.08997 * 110.84804 * 219.67220 * 9 8 7 40 40 H 1.09001 * 110.66402 * 96.51942 * 9 8 7 41 41 H 1.08996 * 109.46733 * 192.80129 * 12 10 9 42 42 H 1.08997 * 109.46696 * 312.80110 * 12 10 9 43 43 H 1.09006 * 109.47141 * 300.00381 * 13 12 10 44 44 H 1.08999 * 109.46999 * 59.99894 * 13 12 10 45 45 H 0.97000 * 120.00090 * 359.97438 * 14 13 12 46 46 H 1.08997 * 109.47116 * 299.99402 * 17 15 14 47 47 H 1.08999 * 109.47489 * 59.99832 * 17 15 14 48 48 H 0.97002 * 120.00171 * 179.97438 * 22 21 19 49 49 H 1.09001 * 110.36861 * 322.92758 * 27 7 5 50 50 H 1.09004 * 110.36794 * 85.14898 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0323 -0.7103 1.2305 6 8 1.2467 -1.2355 1.9907 7 7 3.3542 -0.7573 1.4891 8 6 4.4031 -0.0757 0.7167 9 6 5.7519 -0.3927 1.3966 10 6 5.3334 -0.7795 2.8397 11 1 5.1895 0.1078 3.4564 12 6 6.3572 -1.7238 3.4732 13 6 7.6263 -0.9424 3.8190 14 7 8.6067 -1.8467 4.4249 15 6 9.8082 -1.3754 4.8133 16 8 10.0779 -0.2029 4.6607 17 6 10.8170 -2.3058 5.4360 18 16 12.3183 -1.3813 5.8454 19 6 13.2949 -2.6745 6.5371 20 1 12.8981 -3.6770 6.5987 21 6 14.5747 -2.4049 7.0018 22 7 15.3045 -3.3710 7.5181 23 14 15.2614 -0.6711 6.8947 24 1 14.9229 0.0729 8.1344 25 1 16.7372 -0.7317 6.7411 26 1 14.6701 0.0240 5.7232 27 6 3.9883 -1.5059 2.5895 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 3.0915 1.4561 -0.2865 32 1 1.4618 2.0323 -0.7113 33 1 1.9298 1.8668 0.9980 34 1 1.7632 -1.7742 -1.1993 35 1 1.5952 -0.2702 -2.1363 36 1 3.1252 -0.6330 -1.3021 37 1 4.4071 -0.4445 -0.3090 38 1 4.2297 1.0004 0.7253 39 1 6.3981 0.4850 1.4046 40 1 6.2453 -1.2288 0.9010 41 1 5.9385 -2.1571 4.3814 42 1 6.6010 -2.5199 2.7697 43 1 8.0450 -0.5089 2.9107 44 1 7.3824 -0.1463 4.5225 45 1 8.3908 -2.7844 4.5472 46 1 10.3986 -2.7403 6.3439 47 1 11.0611 -3.1011 4.7318 48 1 16.1991 -3.1828 7.8426 49 1 3.3648 -1.4681 3.4828 50 1 4.1633 -2.5402 2.2933 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001060382085.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:29:59 Heat of formation + Delta-G solvation = -88.079872 kcal Electronic energy + Delta-G solvation = -26916.692577 eV Core-core repulsion = 23069.519186 eV Total energy + Delta-G solvation = -3847.173391 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.176 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.00854 -39.37895 -38.37423 -36.18653 -35.37957 -33.02496 -32.45003 -30.50768 -29.75109 -28.21179 -27.95714 -27.31138 -25.63313 -24.71153 -23.11436 -21.83906 -20.99571 -20.25658 -19.31495 -17.89411 -17.10952 -16.83455 -16.30328 -16.06072 -15.89318 -15.69484 -15.32672 -14.97837 -14.76397 -14.48304 -14.11827 -13.93060 -13.81482 -13.58585 -13.45927 -13.20624 -12.81924 -12.79297 -12.74733 -12.72310 -12.53442 -12.29337 -12.27193 -11.99896 -11.83189 -11.53833 -11.46366 -11.28263 -11.22717 -11.10560 -11.02089 -10.94313 -10.61564 -10.05561 -9.87010 -9.55584 -9.06132 -9.03999 -8.98474 -8.51765 -6.93370 -6.30135 -4.02052 2.22638 2.49892 2.75756 2.95200 3.29026 3.33043 3.49249 3.63011 3.79594 4.05411 4.07874 4.25852 4.29269 4.32021 4.34687 4.59071 4.67700 4.69986 4.78173 4.84120 4.92787 4.97350 5.03918 5.06346 5.08989 5.15522 5.16935 5.28163 5.30294 5.32088 5.32846 5.34663 5.40246 5.44426 5.51797 5.58342 5.65087 5.69218 5.73896 5.77415 5.82029 5.88135 5.91508 5.99732 6.49517 7.06996 7.57685 7.75245 7.92880 8.40393 8.46382 9.16029 10.79094 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.039407 B = 0.001506 C = 0.001480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.359331 B =18586.085633 C =18910.826284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.083 4.083 3 C -0.152 4.152 4 C -0.145 4.145 5 C 0.538 3.462 6 O -0.539 6.539 7 N -0.617 5.617 8 C 0.088 3.912 9 C -0.132 4.132 10 C -0.096 4.096 11 H 0.090 0.910 12 C -0.121 4.121 13 C 0.122 3.878 14 N -0.738 5.738 15 C 0.530 3.470 16 O -0.520 6.520 17 C -0.125 4.125 18 S -0.142 6.142 19 C -0.522 4.522 20 H 0.088 0.912 21 C 0.096 3.904 22 N -0.880 5.880 23 Si 0.857 3.143 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 C 0.109 3.891 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.088 0.912 40 H 0.081 0.919 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.067 0.933 44 H 0.066 0.934 45 H 0.400 0.600 46 H 0.097 0.903 47 H 0.097 0.903 48 H 0.271 0.729 49 H 0.080 0.920 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.567 5.829 -18.498 34.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.086 4.086 3 C -0.209 4.209 4 C -0.203 4.203 5 C 0.327 3.673 6 O -0.415 6.415 7 N -0.351 5.351 8 C -0.034 4.034 9 C -0.170 4.170 10 C -0.116 4.116 11 H 0.109 0.891 12 C -0.159 4.159 13 C -0.002 4.002 14 N -0.393 5.393 15 C 0.316 3.684 16 O -0.395 6.395 17 C -0.275 4.275 18 S 0.084 5.916 19 C -0.670 4.670 20 H 0.106 0.894 21 C -0.113 4.113 22 N -0.517 5.517 23 Si 0.682 3.318 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.159 1.159 27 C -0.013 4.013 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.093 0.907 38 H 0.097 0.903 39 H 0.106 0.894 40 H 0.099 0.901 41 H 0.094 0.906 42 H 0.093 0.907 43 H 0.085 0.915 44 H 0.084 0.916 45 H 0.234 0.766 46 H 0.115 0.885 47 H 0.115 0.885 48 H 0.081 0.919 49 H 0.098 0.902 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -28.463 7.459 -18.285 34.643 hybrid contribution 0.164 -1.301 0.363 1.360 sum -28.299 6.159 -17.922 34.059 Atomic orbital electron populations 1.21677 0.91763 1.02947 1.02096 1.20763 0.97975 0.96414 0.93434 1.22146 1.02150 0.93796 1.02850 1.21977 1.01713 1.00577 0.95983 1.20340 0.80296 0.79836 0.86843 1.90707 1.54404 1.47190 1.49242 1.48427 1.05532 1.50204 1.30958 1.22530 0.87135 0.97939 0.95836 1.22818 0.95921 1.03197 0.95066 1.22288 0.93689 0.99126 0.96495 0.89132 1.21720 0.94287 0.98231 1.01636 1.21255 0.87671 0.92842 0.98401 1.45963 1.15556 1.12944 1.64810 1.20283 0.81794 0.88866 0.77447 1.90698 1.77639 1.17341 1.53801 1.23283 0.98889 1.01758 1.03589 1.84784 1.09315 1.17028 1.80482 1.22319 1.02306 0.96176 1.46166 0.89389 1.24712 0.95589 0.97655 0.93325 1.69939 1.10534 1.32233 1.38966 0.86731 0.79236 0.84672 0.81190 1.19206 1.19930 1.15936 1.22276 0.93052 0.95355 0.90617 0.91987 0.91887 0.91845 0.90976 0.91272 0.92148 0.92137 0.91173 0.91539 0.90731 0.90317 0.89381 0.90082 0.90599 0.90684 0.91482 0.91593 0.76644 0.88493 0.88455 0.91935 0.90197 0.91206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.83 7.71 37.16 0.29 -0.54 16 2 C -0.08 -0.52 0.75 -155.66 -0.12 -0.64 16 3 C -0.15 -0.70 7.69 37.16 0.29 -0.41 16 4 C -0.15 -0.68 8.27 37.16 0.31 -0.37 16 5 C 0.54 5.02 6.51 -10.98 -0.07 4.94 16 6 O -0.54 -7.16 16.21 5.56 0.09 -7.07 16 7 N -0.62 -4.58 3.32 -170.51 -0.57 -5.15 16 8 C 0.09 0.42 5.12 -3.06 -0.02 0.41 16 9 C -0.13 -0.63 5.90 -24.89 -0.15 -0.78 16 10 C -0.10 -0.55 3.01 -88.47 -0.27 -0.82 16 11 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 12 C -0.12 -0.73 4.84 -26.73 -0.13 -0.86 16 13 C 0.12 1.16 5.58 -4.05 -0.02 1.13 16 14 N -0.74 -8.58 5.56 -60.30 -0.33 -8.92 16 15 C 0.53 9.06 7.85 -10.98 -0.09 8.97 16 16 O -0.52 -10.94 15.86 5.56 0.09 -10.85 16 17 C -0.12 -2.35 6.16 36.01 0.22 -2.13 16 18 S -0.14 -3.58 18.55 -107.50 -1.99 -5.57 16 19 C -0.52 -14.95 10.04 30.94 0.31 -14.64 16 20 H 0.09 2.62 8.03 -52.49 -0.42 2.20 16 21 C 0.10 2.79 5.50 -17.43 -0.10 2.69 16 22 N -0.88 -26.42 13.97 55.49 0.78 -25.65 16 23 Si 0.86 21.64 27.74 -169.99 -4.71 16.93 16 24 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 26 H -0.24 -5.93 6.74 56.52 0.38 -5.55 16 27 C 0.11 0.78 6.40 -2.53 -0.02 0.76 16 28 H 0.06 0.46 8.13 -51.93 -0.42 0.04 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.48 8.06 -51.93 -0.42 0.06 16 31 H 0.07 0.25 4.98 -51.93 -0.26 -0.01 16 32 H 0.07 0.25 8.04 -51.93 -0.42 -0.17 16 33 H 0.06 0.34 8.03 -51.93 -0.42 -0.08 16 34 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 36 H 0.07 0.26 5.12 -51.93 -0.27 -0.01 16 37 H 0.07 0.28 5.60 -51.93 -0.29 -0.01 16 38 H 0.08 0.32 5.67 -51.93 -0.29 0.03 16 39 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.08 0.37 7.91 -51.93 -0.41 -0.04 16 41 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.07 0.40 7.97 -51.93 -0.41 -0.01 16 43 H 0.07 0.67 7.75 -51.93 -0.40 0.27 16 44 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.40 3.49 8.47 -40.82 -0.35 3.15 16 46 H 0.10 1.70 8.14 -51.92 -0.42 1.28 16 47 H 0.10 1.70 8.14 -51.92 -0.42 1.27 16 48 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 49 H 0.08 0.68 7.99 -51.93 -0.41 0.26 16 50 H 0.07 0.48 8.04 -51.93 -0.42 0.06 16 LS Contribution 404.84 15.07 6.10 6.10 Total: -1.00 -36.33 404.84 -8.68 -45.02 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -8.57 Total: -2.58 kcal Atomic # 6 Polarization: -2.71 SS G_CDS: 0.45 Total: -2.26 kcal Atomic # 7 Polarization: -39.59 SS G_CDS: -0.13 Total: -39.72 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: 0.18 Total: -17.92 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.71 Total: 16.93 kcal Atomic # 16 Polarization: -3.58 SS G_CDS: -1.99 Total: -5.57 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -36.33 -8.68 -45.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001060382085.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.063 kcal (2) G-P(sol) polarization free energy of solvation -36.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds