Wall clock time and date at job start Wed Apr 1 2020 01:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53007 * 109.47152 * 2 1 4 4 C 1.53004 * 109.46750 * 60.00201 * 3 2 1 5 5 C 1.52998 * 109.46944 * 300.00061 * 3 2 1 6 6 C 1.50701 * 109.47254 * 179.97438 * 3 2 1 7 7 O 1.21277 * 119.99882 * 0.02562 * 6 3 2 8 8 N 1.34770 * 119.99779 * 179.97438 * 6 3 2 9 9 C 1.46504 * 119.99770 * 180.02562 * 8 6 3 10 10 C 1.53004 * 109.46806 * 174.96454 * 9 8 6 11 11 N 1.46493 * 112.85201 * 311.51732 * 10 9 8 12 12 C 1.34774 * 119.99921 * 294.01903 * 11 10 9 13 13 O 1.21279 * 120.00555 * 354.96786 * 12 11 10 14 14 C 1.50709 * 119.99962 * 174.96618 * 12 11 10 15 15 S 1.80996 * 109.47190 * 180.02562 * 14 12 11 16 16 C 1.76193 * 100.00225 * 179.97438 * 15 14 12 17 17 H 1.07998 * 119.99797 * 0.02562 * 16 15 14 18 18 C 1.38801 * 120.00131 * 179.97438 * 16 15 14 19 19 N 1.31623 * 120.00243 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99895 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47306 * 60.00310 * 20 18 16 22 22 H 1.48494 * 109.47392 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47144 * 300.00202 * 20 18 16 24 24 C 1.53775 * 113.69045 * 82.79196 * 10 9 8 25 25 C 1.53773 * 87.08459 * 139.98690 * 24 10 9 26 26 C 1.53773 * 87.08418 * 334.56723 * 25 24 10 27 27 H 1.08997 * 109.47374 * 299.99908 * 1 2 3 28 28 H 1.08997 * 109.47159 * 60.00024 * 1 2 3 29 29 H 1.08997 * 109.47019 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47374 * 240.00092 * 2 1 3 31 31 H 1.09007 * 109.47244 * 120.00044 * 2 1 3 32 32 H 1.09000 * 109.46834 * 180.02562 * 4 3 2 33 33 H 1.09000 * 109.46859 * 299.99826 * 4 3 2 34 34 H 1.08997 * 109.47473 * 60.00078 * 4 3 2 35 35 H 1.08997 * 109.47111 * 299.99619 * 5 3 2 36 36 H 1.08995 * 109.46862 * 60.00228 * 5 3 2 37 37 H 1.09004 * 109.46632 * 179.97438 * 5 3 2 38 38 H 0.96999 * 120.00349 * 0.02562 * 8 6 3 39 39 H 1.09002 * 109.46965 * 54.96849 * 9 8 6 40 40 H 1.08994 * 109.47187 * 294.96475 * 9 8 6 41 41 H 0.97000 * 120.00023 * 114.02140 * 11 10 9 42 42 H 1.09004 * 109.46812 * 60.00520 * 14 12 11 43 43 H 1.08991 * 109.47098 * 300.00365 * 14 12 11 44 44 H 0.96999 * 120.00443 * 179.97438 * 19 18 16 45 45 H 1.09007 * 113.61242 * 254.53810 * 24 10 9 46 46 H 1.09000 * 113.61764 * 25.43786 * 24 10 9 47 47 H 1.09006 * 113.61697 * 220.01254 * 25 24 10 48 48 H 1.09002 * 113.61654 * 89.11289 * 25 24 10 49 49 H 1.09004 * 113.61308 * 270.88569 * 26 25 24 50 50 H 1.08991 * 113.62440 * 139.97979 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.5300 2.1637 1.2493 5 6 1.5299 2.1638 -1.2492 6 6 3.5470 1.4426 0.0006 7 8 4.1534 0.3923 0.0006 8 7 4.2208 2.6098 0.0002 9 6 5.6858 2.6098 0.0003 10 6 6.1957 4.0468 -0.1269 11 7 5.5417 4.7890 -1.2073 12 6 5.7323 4.4204 -2.4896 13 8 6.5156 3.5335 -2.7557 14 6 4.9721 5.1103 -3.5929 15 16 5.4428 4.3961 -5.1880 16 6 4.4339 5.3594 -6.2643 17 1 3.7835 6.1198 -5.8580 18 6 4.4757 5.1416 -7.6345 19 7 5.2687 4.2152 -8.1298 20 14 3.4065 6.1635 -8.7757 21 1 3.7577 7.5989 -8.6297 22 1 3.6340 5.7381 -10.1801 23 1 1.9773 5.9654 -8.4243 24 6 6.2350 4.8088 1.2082 25 6 7.5715 5.4063 0.7377 26 6 7.7296 4.1568 -0.1445 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.8929 3.1915 1.2491 33 1 0.4400 2.1637 1.2493 34 1 1.8933 1.6499 2.1393 35 1 1.8933 1.6500 -2.1392 36 1 0.4400 2.1638 -1.2491 37 1 1.8930 3.1916 -1.2490 38 1 3.7358 3.4498 -0.0001 39 1 6.0492 2.0196 -0.8410 40 1 6.0491 2.1764 0.9320 41 1 4.9715 5.5458 -0.9998 42 1 5.2087 6.1743 -3.5869 43 1 3.9020 4.9752 -3.4363 44 1 5.2976 4.0627 -9.0873 45 1 5.4396 5.5468 1.3133 46 1 6.3293 4.1598 2.0789 47 1 8.3189 5.4805 1.5278 48 1 7.4610 6.3304 0.1702 49 1 8.2324 3.3295 0.3563 50 1 8.1408 4.3682 -1.1315 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001064280075.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:05:40 Heat of formation + Delta-G solvation = -72.382441 kcal Electronic energy + Delta-G solvation = -28835.599344 eV Core-core repulsion = 24989.106645 eV Total energy + Delta-G solvation = -3846.492699 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.176 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.82286 -39.89415 -37.85199 -36.42997 -34.52765 -33.04790 -32.44819 -30.58486 -29.26642 -27.70363 -27.58223 -25.97846 -25.50689 -24.99065 -23.11191 -21.51800 -20.72211 -19.44350 -18.91131 -17.87355 -17.19479 -16.40830 -16.32326 -15.75461 -15.47060 -15.30728 -14.82720 -14.70203 -14.55466 -14.51737 -14.23111 -14.00528 -13.58395 -13.43931 -13.08854 -12.72046 -12.68643 -12.54371 -12.43307 -12.32375 -12.18168 -12.11112 -11.71142 -11.67050 -11.40614 -11.11298 -11.06817 -11.05899 -10.99057 -10.79026 -10.77701 -10.76272 -10.51396 -9.84914 -9.63924 -9.40096 -9.08381 -8.99290 -8.94084 -8.26011 -6.52001 -6.23342 -3.94221 2.68682 2.88596 3.03987 3.15458 3.21482 3.25938 3.28604 3.62786 4.17156 4.19135 4.38377 4.46888 4.52442 4.60087 4.67690 4.69734 4.98383 5.04699 5.11783 5.13591 5.24702 5.28350 5.32635 5.39760 5.41955 5.46307 5.51411 5.59255 5.63067 5.64765 5.66196 5.72315 5.80857 5.82413 5.86153 5.91927 5.93734 5.99025 6.06069 6.08814 6.09953 6.17158 6.25146 6.40805 6.68180 7.48297 7.56760 7.62925 8.25332 8.32611 8.57201 9.21753 10.83943 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.008586 B = 0.003569 C = 0.002745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3260.374837 B = 7842.952704 C =10196.586542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.100 4.100 3 C -0.081 4.081 4 C -0.140 4.140 5 C -0.144 4.144 6 C 0.522 3.478 7 O -0.539 6.539 8 N -0.720 5.720 9 C 0.121 3.879 10 C 0.144 3.856 11 N -0.721 5.721 12 C 0.536 3.464 13 O -0.505 6.505 14 C -0.153 4.153 15 S -0.056 6.056 16 C -0.538 4.538 17 H 0.071 0.929 18 C 0.075 3.925 19 N -0.867 5.867 20 Si 0.917 3.083 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.274 1.274 24 C -0.136 4.136 25 C -0.139 4.139 26 C -0.134 4.134 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.057 0.943 33 H 0.070 0.930 34 H 0.059 0.941 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.058 0.942 38 H 0.397 0.603 39 H 0.085 0.915 40 H 0.071 0.929 41 H 0.398 0.602 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.269 0.731 45 H 0.072 0.928 46 H 0.094 0.906 47 H 0.070 0.930 48 H 0.082 0.918 49 H 0.089 0.911 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.136 1.239 23.061 23.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.138 4.138 3 C -0.085 4.085 4 C -0.198 4.198 5 C -0.201 4.201 6 C 0.308 3.692 7 O -0.416 6.416 8 N -0.371 5.371 9 C -0.004 4.004 10 C 0.056 3.944 11 N -0.376 5.376 12 C 0.322 3.678 13 O -0.377 6.377 14 C -0.304 4.304 15 S 0.171 5.829 16 C -0.686 4.686 17 H 0.090 0.910 18 C -0.134 4.134 19 N -0.502 5.502 20 Si 0.744 3.256 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.199 1.199 24 C -0.174 4.174 25 C -0.176 4.176 26 C -0.173 4.173 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.077 0.923 38 H 0.231 0.769 39 H 0.103 0.897 40 H 0.089 0.911 41 H 0.233 0.767 42 H 0.106 0.894 43 H 0.106 0.894 44 H 0.079 0.921 45 H 0.091 0.909 46 H 0.113 0.887 47 H 0.088 0.912 48 H 0.100 0.900 49 H 0.108 0.892 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -4.304 -1.123 22.430 22.867 hybrid contribution -2.054 2.538 -0.437 3.294 sum -6.357 1.415 21.993 22.937 Atomic orbital electron populations 1.21917 0.95549 1.01803 1.01998 1.21347 0.95358 0.93682 1.03400 1.20817 0.91357 0.98511 0.97774 1.21903 1.02058 0.99721 0.96078 1.21924 1.01908 1.00006 0.96269 1.20557 0.89738 0.83522 0.75381 1.90693 1.70318 1.31355 1.49223 1.45798 1.07115 1.08570 1.75611 1.21655 0.79790 0.96079 1.02834 1.21459 0.94448 0.90712 0.87805 1.45724 1.52053 1.34787 1.05070 1.20286 0.82057 0.83026 0.82447 1.90712 1.34472 1.29970 1.82565 1.23535 1.02544 1.03619 1.00713 1.85445 1.57234 1.49204 0.91050 1.22818 1.28696 1.23410 0.93677 0.91049 1.24976 0.95732 0.95489 0.97251 1.69999 1.36069 1.30603 1.13534 0.86246 0.80254 0.80021 0.79110 1.19941 1.20784 1.19941 1.23265 0.98643 0.99610 0.95878 1.22825 0.97070 0.98187 0.99531 1.23172 0.94328 0.98091 1.01739 0.92537 0.92204 0.92611 0.91088 0.91457 0.92393 0.91065 0.92218 0.91519 0.91063 0.92287 0.76915 0.89716 0.91074 0.76728 0.89402 0.89406 0.92093 0.90932 0.88710 0.91153 0.89984 0.89241 0.89707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.26 9.21 37.15 0.34 -0.92 16 2 C -0.10 -1.06 4.28 -26.73 -0.11 -1.17 16 3 C -0.08 -0.83 0.64 -155.65 -0.10 -0.94 16 4 C -0.14 -1.05 8.02 37.16 0.30 -0.75 16 5 C -0.14 -1.46 8.02 37.16 0.30 -1.16 16 6 C 0.52 7.04 6.48 -10.99 -0.07 6.97 16 7 O -0.54 -9.52 15.98 5.56 0.09 -9.43 16 8 N -0.72 -8.26 5.17 -60.29 -0.31 -8.57 16 9 C 0.12 1.52 4.93 -4.04 -0.02 1.50 16 10 C 0.14 1.51 0.63 -131.01 -0.08 1.43 16 11 N -0.72 -8.37 4.53 -46.85 -0.21 -8.58 16 12 C 0.54 9.23 7.40 -10.98 -0.08 9.15 16 13 O -0.50 -10.79 13.86 5.56 0.08 -10.72 16 14 C -0.15 -2.94 6.16 36.01 0.22 -2.72 16 15 S -0.06 -1.49 20.57 -107.50 -2.21 -3.70 16 16 C -0.54 -15.09 9.50 30.94 0.29 -14.79 16 17 H 0.07 1.89 7.80 -52.49 -0.41 1.48 16 18 C 0.08 2.12 5.49 -17.43 -0.10 2.02 16 19 N -0.87 -26.02 13.22 55.49 0.73 -25.29 16 20 Si 0.92 21.18 29.55 -169.99 -5.02 16.15 16 21 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 24 C -0.14 -0.98 7.37 -25.93 -0.19 -1.18 16 25 C -0.14 -1.14 7.99 -25.93 -0.21 -1.35 16 26 C -0.13 -1.49 6.95 -25.92 -0.18 -1.67 16 27 H 0.06 0.39 6.43 -51.93 -0.33 0.05 16 28 H 0.06 0.48 6.43 -51.93 -0.33 0.14 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.89 8.10 -51.93 -0.42 0.47 16 31 H 0.07 0.75 8.10 -51.93 -0.42 0.32 16 32 H 0.06 0.36 7.57 -51.93 -0.39 -0.03 16 33 H 0.07 0.45 6.43 -51.93 -0.33 0.11 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.07 0.60 6.43 -51.93 -0.33 0.27 16 37 H 0.06 0.55 7.56 -51.93 -0.39 0.16 16 38 H 0.40 3.62 6.95 -40.82 -0.28 3.33 16 39 H 0.08 1.44 7.34 -51.93 -0.38 1.06 16 40 H 0.07 0.82 7.94 -51.93 -0.41 0.41 16 41 H 0.40 3.40 8.67 -40.82 -0.35 3.05 16 42 H 0.09 1.55 8.14 -51.91 -0.42 1.13 16 43 H 0.09 1.55 8.14 -51.92 -0.42 1.13 16 44 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 45 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 46 H 0.09 0.61 7.96 -51.93 -0.41 0.20 16 47 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 49 H 0.09 0.91 8.10 -51.93 -0.42 0.48 16 50 H 0.08 1.21 7.19 -51.93 -0.37 0.83 16 LS Contribution 409.67 15.07 6.17 6.17 Total: -1.00 -35.55 409.67 -8.90 -44.45 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -8.52 Total: 5.07 kcal Atomic # 6 Polarization: -5.87 SS G_CDS: 0.31 Total: -5.56 kcal Atomic # 7 Polarization: -42.65 SS G_CDS: 0.21 Total: -42.44 kcal Atomic # 8 Polarization: -20.31 SS G_CDS: 0.17 Total: -20.14 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: -1.49 SS G_CDS: -2.21 Total: -3.70 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -35.55 -8.90 -44.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001064280075.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.935 kcal (2) G-P(sol) polarization free energy of solvation -35.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds