Wall clock time and date at job start Wed Apr 1 2020 01:47:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00489 * 2 1 3 5 5 C 1.50703 * 109.46967 * 294.99707 * 4 2 1 6 6 O 1.21279 * 119.99679 * 0.02562 * 5 4 2 7 7 N 1.34770 * 119.99899 * 179.97438 * 5 4 2 8 8 C 1.46502 * 119.99979 * 179.97438 * 7 5 4 9 9 H 1.08998 * 108.45005 * 327.31871 * 8 7 5 10 10 C 1.52561 * 108.51580 * 209.76867 * 8 7 5 11 11 C 1.50876 * 109.35959 * 153.73873 * 10 8 7 12 12 C 1.53946 * 110.10030 * 91.88513 * 11 10 8 13 13 N 1.47605 * 112.14167 * 319.43538 * 12 11 10 14 14 C 1.34780 * 118.64460 * 137.84229 * 13 12 11 15 15 O 1.21279 * 119.99914 * 180.02562 * 14 13 12 16 16 C 1.50699 * 119.99732 * 0.02562 * 14 13 12 17 17 S 1.81002 * 109.46670 * 180.02562 * 16 14 13 18 18 C 1.76204 * 99.99702 * 180.02562 * 17 16 14 19 19 H 1.07997 * 120.00141 * 359.97438 * 18 17 16 20 20 C 1.38800 * 119.99653 * 179.97438 * 18 17 16 21 21 N 1.31629 * 120.00645 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99821 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47169 * 0.02562 * 22 20 18 24 24 H 1.48495 * 109.47253 * 120.00187 * 22 20 18 25 25 H 1.48499 * 109.47328 * 240.00479 * 22 20 18 26 26 C 1.44576 * 122.71332 * 317.86842 * 13 12 11 27 27 C 1.47095 * 108.50986 * 85.00060 * 8 7 5 28 28 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 29 29 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 31 31 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 32 32 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 33 33 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 34 34 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 35 35 H 1.09001 * 109.47326 * 54.99931 * 4 2 1 36 36 H 1.09000 * 109.46904 * 175.00284 * 4 2 1 37 37 H 0.96996 * 120.00204 * 0.02562 * 7 5 4 38 38 H 1.09006 * 109.49088 * 273.70231 * 10 8 7 39 39 H 1.08994 * 109.49223 * 33.76925 * 10 8 7 40 40 H 1.09002 * 109.36862 * 331.68856 * 11 10 8 41 41 H 1.09003 * 109.36569 * 212.07767 * 11 10 8 42 42 H 1.08994 * 108.95106 * 198.75061 * 12 11 10 43 43 H 1.09000 * 108.94560 * 80.11861 * 12 11 10 44 44 H 1.08996 * 109.47316 * 300.00087 * 16 14 13 45 45 H 1.08997 * 109.47031 * 60.00353 * 16 14 13 46 46 H 0.96996 * 120.00192 * 179.97438 * 21 20 18 47 47 H 1.09000 * 109.45145 * 330.68821 * 26 13 12 48 48 H 1.08998 * 109.45284 * 210.76279 * 26 13 12 49 49 H 1.09007 * 109.33188 * 304.32216 * 27 8 7 50 50 H 1.09002 * 109.32615 * 63.79570 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 1.6414 -2.1733 -1.1891 6 8 1.0110 -2.5901 -0.2405 7 7 1.9845 -3.0083 -2.1897 8 6 1.5974 -4.4201 -2.1308 9 1 1.5950 -4.7339 -1.0870 10 6 2.6442 -5.2410 -2.8778 11 6 2.6661 -6.6449 -2.3257 12 6 1.7088 -7.5442 -3.1287 13 7 0.4485 -6.8538 -3.4660 14 6 -0.0637 -7.0115 -4.7026 15 8 -1.0977 -6.4552 -5.0062 16 6 0.6486 -7.8792 -5.7081 17 16 -0.2804 -7.8893 -7.2615 18 6 0.7469 -8.9478 -8.2253 19 1 1.6454 -9.3657 -7.7960 20 6 0.4011 -9.2447 -9.5364 21 7 -0.6937 -8.7350 -10.0600 22 14 1.4905 -10.3663 -10.5585 23 1 2.6529 -10.8037 -9.7443 24 1 0.7119 -11.5557 -10.9878 25 1 1.9726 -9.6317 -11.7556 26 6 -0.2589 -6.0149 -2.5247 27 6 0.2319 -4.5524 -2.6613 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.6767 1.9563 0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6054 -0.2616 -2.1371 36 1 3.1263 -0.6443 -1.2952 37 1 2.4883 -2.6748 -2.9485 38 1 2.3938 -5.2711 -3.9383 39 1 3.6251 -4.7839 -2.7483 40 1 2.3549 -6.6275 -1.2812 41 1 3.6783 -7.0438 -2.3927 42 1 1.4793 -8.4319 -2.5395 43 1 2.2019 -7.8513 -4.0510 44 1 1.6485 -7.4836 -5.8857 45 1 0.7232 -8.8959 -5.3224 46 1 -0.9351 -8.9422 -10.9763 47 1 -0.0702 -6.3678 -1.5108 48 1 -1.3283 -6.0596 -2.7310 49 1 -0.4364 -3.8942 -2.1059 50 1 0.2241 -4.2660 -3.7130 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001065781966.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:47:02 Heat of formation + Delta-G solvation = -91.027056 kcal Electronic energy + Delta-G solvation = -28042.511839 eV Core-core repulsion = 24195.210649 eV Total energy + Delta-G solvation = -3847.301190 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.176 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.71335 -39.71369 -37.63167 -35.90547 -34.95977 -32.84493 -32.44394 -32.26726 -29.52361 -28.26467 -27.37221 -26.56268 -25.54532 -24.82768 -22.21114 -21.23429 -20.87813 -20.00633 -18.85950 -17.72920 -17.40066 -16.84910 -16.53691 -15.99880 -15.71479 -15.44107 -15.03550 -14.82341 -14.44760 -14.22323 -14.13827 -13.98053 -13.81450 -13.46813 -13.35826 -12.80629 -12.72357 -12.56828 -12.46540 -12.42230 -12.22889 -11.79917 -11.68676 -11.48711 -11.43470 -11.20733 -11.14798 -11.08844 -11.03872 -11.01407 -10.97553 -10.85912 -10.74294 -9.86905 -9.80190 -9.33647 -9.30894 -9.09142 -8.48623 -8.22801 -6.51646 -6.23405 -3.93923 2.44773 2.90574 2.96764 3.07292 3.19778 3.25015 3.29521 3.58871 4.18406 4.30617 4.40911 4.48913 4.56838 4.60788 4.72166 4.88900 4.95205 4.99115 5.06159 5.11759 5.14090 5.18539 5.23437 5.31771 5.35996 5.39945 5.44155 5.46726 5.54139 5.59036 5.60486 5.67121 5.72079 5.78543 5.82782 5.84764 5.91323 5.99133 6.01701 6.04947 6.09945 6.11990 6.21748 6.35282 6.79274 7.28434 7.50877 7.58106 8.03441 8.33532 8.57724 9.22004 10.84005 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.020037 B = 0.002081 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.061216 B =13450.817486 C =13669.048063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.080 4.080 3 C -0.148 4.148 4 C -0.139 4.139 5 C 0.512 3.488 6 O -0.538 6.538 7 N -0.732 5.732 8 C 0.151 3.849 9 H 0.082 0.918 10 C -0.125 4.125 11 C -0.128 4.128 12 C 0.106 3.894 13 N -0.615 5.615 14 C 0.529 3.471 15 O -0.514 6.514 16 C -0.151 4.151 17 S -0.062 6.062 18 C -0.534 4.534 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.867 5.867 22 Si 0.918 3.082 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 C 0.125 3.875 27 C -0.146 4.146 28 H 0.051 0.949 29 H 0.075 0.925 30 H 0.047 0.953 31 H 0.076 0.924 32 H 0.057 0.943 33 H 0.053 0.947 34 H 0.055 0.945 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.399 0.601 38 H 0.076 0.924 39 H 0.071 0.929 40 H 0.069 0.931 41 H 0.081 0.919 42 H 0.065 0.935 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.088 0.912 46 H 0.268 0.732 47 H 0.072 0.928 48 H 0.087 0.913 49 H 0.076 0.924 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.254 13.764 20.374 26.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.099 4.099 3 C -0.206 4.206 4 C -0.179 4.179 5 C 0.299 3.701 6 O -0.415 6.415 7 N -0.383 5.383 8 C 0.048 3.952 9 H 0.100 0.900 10 C -0.163 4.163 11 C -0.166 4.166 12 C -0.017 4.017 13 N -0.350 5.350 14 C 0.316 3.684 15 O -0.388 6.388 16 C -0.302 4.302 17 S 0.164 5.836 18 C -0.683 4.683 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.502 5.502 22 Si 0.745 3.255 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.206 1.206 26 C 0.001 3.999 27 C -0.186 4.186 28 H 0.070 0.930 29 H 0.094 0.906 30 H 0.067 0.933 31 H 0.095 0.905 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.111 0.889 36 H 0.109 0.891 37 H 0.233 0.767 38 H 0.094 0.906 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.099 0.901 42 H 0.083 0.917 43 H 0.106 0.894 44 H 0.106 0.894 45 H 0.107 0.893 46 H 0.078 0.922 47 H 0.091 0.909 48 H 0.105 0.895 49 H 0.094 0.906 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 8.147 14.298 20.483 26.274 hybrid contribution 2.244 -1.180 -0.776 2.651 sum 10.391 13.118 19.707 25.854 Atomic orbital electron populations 1.21965 0.94639 1.03481 1.01046 1.20853 0.96731 0.95250 0.97072 1.21870 1.00787 0.95880 1.02043 1.21806 1.02761 0.92239 1.01108 1.20734 0.78989 0.88341 0.82045 1.90665 1.39553 1.77865 1.33419 1.46386 1.58095 1.10111 1.23741 1.20005 0.94068 0.80012 1.01164 0.89978 1.21379 0.98373 0.95314 1.01281 1.21674 0.99987 0.94961 1.00017 1.22005 0.84278 0.94437 1.01030 1.47750 1.24528 1.49782 1.12975 1.20389 0.85010 0.81111 0.81867 1.90698 1.23292 1.47463 1.77341 1.23581 1.03835 1.01221 1.01556 1.85422 1.32889 1.64355 1.00908 1.22896 1.11564 1.33905 0.99897 0.90917 1.24995 0.95572 0.96209 0.96842 1.70026 1.22987 1.42281 1.14939 0.86125 0.79918 0.79851 0.79647 1.19620 1.20566 1.20580 1.21209 0.97785 0.88538 0.92386 1.21587 0.96300 0.98014 1.02670 0.92993 0.90636 0.93339 0.90519 0.92393 0.92745 0.92609 0.88883 0.89060 0.76696 0.90563 0.91056 0.91274 0.90059 0.91670 0.89366 0.89360 0.89325 0.92238 0.90915 0.89460 0.90571 0.91034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 8.93 37.16 0.33 -1.00 16 2 C -0.08 -0.60 2.57 -90.62 -0.23 -0.83 16 3 C -0.15 -0.85 9.19 37.16 0.34 -0.51 16 4 C -0.14 -0.93 5.17 -27.88 -0.14 -1.08 16 5 C 0.51 4.94 7.39 -10.99 -0.08 4.85 16 6 O -0.54 -7.03 13.46 5.56 0.07 -6.96 16 7 N -0.73 -6.19 4.88 -56.82 -0.28 -6.47 16 8 C 0.15 1.47 1.96 -70.99 -0.14 1.33 16 9 H 0.08 0.89 6.65 -51.93 -0.35 0.54 16 10 C -0.13 -1.07 5.00 -28.02 -0.14 -1.21 16 11 C -0.13 -1.00 5.71 -27.30 -0.16 -1.15 16 12 C 0.11 1.07 5.95 -2.94 -0.02 1.05 16 13 N -0.61 -8.32 2.24 -172.54 -0.39 -8.71 16 14 C 0.53 9.76 7.63 -10.98 -0.08 9.68 16 15 O -0.51 -11.54 15.30 5.56 0.09 -11.46 16 16 C -0.15 -2.99 4.48 36.01 0.16 -2.83 16 17 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 18 C -0.53 -15.02 9.50 30.94 0.29 -14.73 16 19 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 20 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 21 N -0.87 -25.96 13.22 55.49 0.73 -25.23 16 22 Si 0.92 21.17 29.55 -169.99 -5.02 16.15 16 23 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 24 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 25 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 26 C 0.13 1.56 5.38 -4.08 -0.02 1.54 16 27 C -0.15 -1.73 5.19 -28.58 -0.15 -1.88 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.84 5.95 -51.93 -0.31 0.53 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 0.67 7.96 -51.93 -0.41 0.26 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 34 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.40 2.51 8.61 -40.82 -0.35 2.16 16 38 H 0.08 0.79 7.48 -51.93 -0.39 0.40 16 39 H 0.07 0.51 8.05 -51.93 -0.42 0.09 16 40 H 0.07 0.52 7.31 -51.93 -0.38 0.14 16 41 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.09 0.93 5.82 -51.93 -0.30 0.63 16 44 H 0.09 1.60 7.41 -51.92 -0.38 1.21 16 45 H 0.09 1.64 8.03 -51.92 -0.42 1.22 16 46 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 47 H 0.07 0.76 8.06 -51.93 -0.42 0.34 16 48 H 0.09 1.26 7.30 -51.93 -0.38 0.88 16 49 H 0.08 0.96 7.95 -51.93 -0.41 0.55 16 50 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 LS Contribution 404.21 15.07 6.09 6.09 Total: -1.00 -35.01 404.21 -9.74 -44.75 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -8.69 Total: 0.53 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: -0.13 Total: -4.80 kcal Atomic # 7 Polarization: -40.48 SS G_CDS: 0.07 Total: -40.41 kcal Atomic # 8 Polarization: -18.57 SS G_CDS: 0.16 Total: -18.41 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -35.01 -9.74 -44.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001065781966.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.280 kcal (2) G-P(sol) polarization free energy of solvation -35.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds