Wall clock time and date at job start Wed Apr 1 2020 01:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.46846 * 2 1 4 4 C 1.53006 * 109.46943 * 119.99596 * 2 1 3 5 5 C 1.50695 * 109.47047 * 175.00106 * 4 2 1 6 6 O 1.21289 * 119.99922 * 0.02562 * 5 4 2 7 7 N 1.34771 * 120.00288 * 179.97438 * 5 4 2 8 8 C 1.44578 * 118.64072 * 0.02562 * 7 5 4 9 9 C 1.54860 * 109.59935 * 270.74613 * 8 7 5 10 10 C 1.47096 * 110.32393 * 288.73152 * 9 8 7 11 11 C 1.52566 * 114.32320 * 62.80169 * 10 9 8 12 12 H 1.09000 * 109.49318 * 34.95566 * 11 10 9 13 13 N 1.46508 * 109.49159 * 155.02259 * 11 10 9 14 14 C 1.34776 * 119.99892 * 205.00265 * 13 11 10 15 15 O 1.21281 * 120.00227 * 359.97438 * 14 13 11 16 16 C 1.50702 * 119.99426 * 180.02562 * 14 13 11 17 17 S 1.81000 * 109.47021 * 179.97438 * 16 14 13 18 18 C 1.76198 * 100.00261 * 179.97438 * 17 16 14 19 19 H 1.07998 * 119.99810 * 359.97438 * 18 17 16 20 20 C 1.38791 * 120.00181 * 179.97438 * 18 17 16 21 21 N 1.31633 * 120.00228 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00280 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47114 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47372 * 120.00149 * 22 20 18 25 25 H 1.48498 * 109.47162 * 240.00063 * 22 20 18 26 26 C 1.50880 * 109.36192 * 274.98946 * 11 10 9 27 27 C 1.47605 * 118.64707 * 180.02562 * 7 5 4 28 28 H 1.09001 * 109.47267 * 300.00179 * 1 2 3 29 29 H 1.08998 * 109.47249 * 59.99944 * 1 2 3 30 30 H 1.09003 * 109.46965 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47267 * 239.99821 * 2 1 3 32 32 H 1.08994 * 109.46876 * 299.99722 * 3 2 1 33 33 H 1.09001 * 109.47334 * 59.99862 * 3 2 1 34 34 H 1.08999 * 109.46756 * 179.97438 * 3 2 1 35 35 H 1.08999 * 109.47013 * 55.00464 * 4 2 1 36 36 H 1.08997 * 109.46851 * 295.00337 * 4 2 1 37 37 H 1.09008 * 109.45245 * 150.70836 * 8 7 5 38 38 H 1.09002 * 109.42845 * 30.77332 * 8 7 5 39 39 H 1.09001 * 109.32868 * 168.47349 * 9 8 7 40 40 H 1.08997 * 109.18873 * 48.90626 * 9 8 7 41 41 H 1.09002 * 108.51303 * 184.05335 * 10 9 8 42 42 H 1.08995 * 108.51439 * 301.55010 * 10 9 8 43 43 H 0.97000 * 119.99457 * 24.99627 * 13 11 10 44 44 H 1.09003 * 109.46916 * 299.99650 * 16 14 13 45 45 H 1.08998 * 109.47661 * 59.99798 * 16 14 13 46 46 H 0.96998 * 120.00855 * 180.02562 * 21 20 18 47 47 H 1.09003 * 109.36457 * 331.69136 * 26 11 10 48 48 H 1.09008 * 109.26452 * 212.01479 * 26 11 10 49 49 H 1.08998 * 108.94859 * 258.53456 * 27 7 5 50 50 H 1.09004 * 108.94319 * 17.25373 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 3.5418 -0.8293 1.1890 6 8 4.1450 -0.3739 0.2404 7 7 4.2149 -1.4311 2.1896 8 6 3.4665 -1.9631 3.3065 9 6 3.3007 -0.8684 4.3892 10 6 4.5865 -0.6099 5.0555 11 6 5.6741 -0.0674 4.1334 12 1 5.2243 0.5849 3.3848 13 7 6.6490 0.6914 4.9210 14 6 7.3844 1.6566 4.3344 15 8 7.2395 1.8967 3.1545 16 6 8.3876 2.4366 5.1445 17 16 9.2091 3.6496 4.0815 18 6 10.2942 4.3967 5.2516 19 1 10.2969 4.0594 6.2776 20 6 11.1454 5.4186 4.8548 21 7 11.1417 5.8301 3.6044 22 14 12.2952 6.2112 6.0954 23 1 12.1065 5.5734 7.4231 24 1 13.7014 6.0283 5.6543 25 1 11.9924 7.6615 6.1948 26 6 6.3678 -1.2180 3.4469 27 6 5.6855 -1.5199 2.1001 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.6766 1.9563 -0.8900 33 1 1.6765 1.9564 0.8900 34 1 3.1299 1.4425 0.0005 35 1 1.6054 -1.7198 1.2953 36 1 1.7515 -0.1582 2.1370 37 1 4.0010 -2.8138 3.7293 38 1 2.4836 -2.2861 2.9634 39 1 2.5716 -1.1997 5.1286 40 1 2.9468 0.0493 3.9196 41 1 4.4221 0.1096 5.8576 42 1 4.9405 -1.5411 5.4977 43 1 6.7651 0.4991 5.8646 44 1 7.8760 2.9525 5.9571 45 1 9.1303 1.7543 5.5579 46 1 11.7368 6.5440 3.3269 47 1 6.3180 -2.1016 4.0833 48 1 7.4116 -0.9565 3.2728 49 1 5.9606 -2.5253 1.7812 50 1 6.0387 -0.8043 1.3576 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001065876442.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:28:49 Heat of formation + Delta-G solvation = -90.844258 kcal Electronic energy + Delta-G solvation = -28382.280615 eV Core-core repulsion = 24534.987352 eV Total energy + Delta-G solvation = -3847.293263 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.176 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.82533 -39.39398 -37.75054 -35.78670 -34.98318 -33.14865 -32.41885 -32.06951 -29.31575 -28.24589 -27.24174 -26.69832 -25.52324 -24.96874 -22.49766 -20.91220 -20.53034 -20.14291 -18.94977 -17.81430 -17.36191 -16.74170 -16.39503 -16.25267 -15.73106 -15.17564 -14.79968 -14.76711 -14.50630 -14.31012 -14.15230 -14.03509 -13.79160 -13.48406 -13.16892 -13.02307 -12.78208 -12.59433 -12.42722 -12.32660 -12.10444 -11.94122 -11.84894 -11.71952 -11.23572 -11.17925 -11.06755 -11.02914 -11.01457 -10.99775 -10.82925 -10.81161 -10.73037 -9.79232 -9.73174 -9.34962 -9.07433 -9.01204 -8.71310 -8.20931 -6.48409 -6.20476 -3.90951 2.50976 2.80329 3.03792 3.12231 3.22072 3.28620 3.33099 3.70784 4.21217 4.22627 4.39389 4.43191 4.51529 4.57599 4.69498 4.85200 4.89658 5.01333 5.05748 5.14541 5.15106 5.16524 5.23147 5.27910 5.30733 5.37598 5.45977 5.47984 5.54430 5.56740 5.65008 5.67275 5.73392 5.78021 5.84498 5.87132 5.89628 5.97887 6.00775 6.14110 6.15313 6.17651 6.34578 6.45806 6.68914 7.20555 7.60736 7.73563 8.08462 8.36408 8.65162 9.24732 10.86955 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.016594 B = 0.002323 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.963665 B =12048.218815 C =12954.960325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.082 4.082 3 C -0.155 4.155 4 C -0.136 4.136 5 C 0.507 3.493 6 O -0.527 6.527 7 N -0.610 5.610 8 C 0.108 3.892 9 C -0.136 4.136 10 C -0.126 4.126 11 C 0.151 3.849 12 H 0.089 0.911 13 N -0.737 5.737 14 C 0.530 3.470 15 O -0.512 6.512 16 C -0.153 4.153 17 S -0.060 6.060 18 C -0.535 4.535 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 C -0.140 4.140 27 C 0.115 3.885 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.052 0.948 31 H 0.076 0.924 32 H 0.052 0.948 33 H 0.047 0.953 34 H 0.077 0.923 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.066 0.934 43 H 0.396 0.604 44 H 0.088 0.912 45 H 0.089 0.911 46 H 0.268 0.732 47 H 0.065 0.935 48 H 0.085 0.915 49 H 0.063 0.937 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.722 -19.811 2.285 29.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.101 4.101 3 C -0.213 4.213 4 C -0.176 4.176 5 C 0.296 3.704 6 O -0.403 6.403 7 N -0.344 5.344 8 C -0.017 4.017 9 C -0.175 4.175 10 C -0.164 4.164 11 C 0.046 3.954 12 H 0.107 0.893 13 N -0.392 5.392 14 C 0.316 3.684 15 O -0.385 6.385 16 C -0.304 4.304 17 S 0.167 5.833 18 C -0.683 4.683 19 H 0.091 0.909 20 C -0.137 4.137 21 N -0.502 5.502 22 Si 0.745 3.255 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.206 1.206 26 C -0.180 4.180 27 C -0.007 4.007 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.095 0.905 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.096 0.904 35 H 0.109 0.891 36 H 0.111 0.889 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.098 0.902 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.084 0.916 43 H 0.230 0.770 44 H 0.106 0.894 45 H 0.107 0.893 46 H 0.078 0.922 47 H 0.084 0.916 48 H 0.103 0.897 49 H 0.081 0.919 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -21.541 -19.044 -0.329 28.754 hybrid contribution 1.015 0.085 2.886 3.061 sum -20.526 -18.960 2.557 28.060 Atomic orbital electron populations 1.21860 0.95050 1.01477 1.02049 1.20886 0.94933 0.97162 0.97094 1.21970 1.03515 0.94697 1.01068 1.21858 0.92087 1.02541 1.01085 1.20840 0.90313 0.77070 0.82218 1.90704 1.70204 1.46379 1.33050 1.47780 1.07058 1.58502 1.21021 1.21639 0.96745 0.96213 0.87060 1.21253 0.97545 1.00028 0.98651 1.20712 0.95112 1.01737 0.98871 1.20289 0.88533 0.92851 0.93711 0.89280 1.46175 1.41476 1.38250 1.13251 1.20328 0.80876 0.79065 0.88123 1.90732 1.66096 1.65931 1.15759 1.23534 1.00086 1.02908 1.03858 1.85448 1.46180 1.38473 1.13212 1.22903 1.24998 1.23080 0.97336 0.90921 1.24999 0.96841 0.95938 0.95881 1.70029 1.37100 1.27445 1.15660 0.86117 0.79925 0.78953 0.80489 1.19645 1.20571 1.20566 1.22213 1.01166 0.98398 0.96177 1.21784 0.78258 1.02281 0.98389 0.92662 0.92375 0.92859 0.90523 0.92916 0.93365 0.90443 0.89144 0.88895 0.90192 0.90125 0.90168 0.91331 0.91261 0.91553 0.77025 0.89358 0.89317 0.92231 0.91584 0.89687 0.91906 0.88551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.19 37.16 0.34 -0.63 16 2 C -0.08 -0.74 2.57 -90.62 -0.23 -0.97 16 3 C -0.16 -1.71 8.93 37.16 0.33 -1.38 16 4 C -0.14 -1.07 3.67 -27.88 -0.10 -1.17 16 5 C 0.51 5.81 7.34 -10.99 -0.08 5.73 16 6 O -0.53 -8.38 13.24 5.55 0.07 -8.30 16 7 N -0.61 -5.82 2.24 -172.52 -0.39 -6.21 16 8 C 0.11 0.63 5.17 -4.09 -0.02 0.60 16 9 C -0.14 -0.81 5.62 -28.58 -0.16 -0.97 16 10 C -0.13 -0.94 4.69 -29.79 -0.14 -1.08 16 11 C 0.15 1.74 2.06 -69.21 -0.14 1.60 16 12 H 0.09 1.35 6.92 -51.93 -0.36 0.99 16 13 N -0.74 -9.65 4.93 -55.06 -0.27 -9.92 16 14 C 0.53 9.92 7.66 -10.98 -0.08 9.84 16 15 O -0.51 -11.83 15.53 5.56 0.09 -11.75 16 16 C -0.15 -3.10 6.16 36.01 0.22 -2.88 16 17 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 18 C -0.53 -15.36 9.50 30.94 0.29 -15.07 16 19 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 20 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 21 N -0.87 -26.45 13.22 55.49 0.73 -25.71 16 22 Si 0.92 21.57 29.55 -169.99 -5.02 16.55 16 23 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 26 C -0.14 -1.50 5.39 -27.29 -0.15 -1.64 16 27 C 0.12 1.28 6.10 -2.93 -0.02 1.27 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.08 0.79 7.96 -51.93 -0.41 0.37 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.08 1.11 5.95 -51.93 -0.31 0.80 16 35 H 0.09 0.49 7.30 -51.93 -0.38 0.12 16 36 H 0.09 0.62 7.08 -51.93 -0.37 0.25 16 37 H 0.08 0.38 8.07 -51.92 -0.42 -0.04 16 38 H 0.08 0.32 6.26 -51.93 -0.32 -0.01 16 39 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.07 0.51 7.27 -51.93 -0.38 0.13 16 41 H 0.07 0.52 8.04 -51.93 -0.42 0.10 16 42 H 0.07 0.39 7.36 -51.93 -0.38 0.01 16 43 H 0.40 3.96 8.60 -40.82 -0.35 3.61 16 44 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 45 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 46 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 47 H 0.07 0.54 7.32 -51.93 -0.38 0.16 16 48 H 0.08 1.11 7.84 -51.92 -0.41 0.71 16 49 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 50 H 0.10 1.44 6.95 -51.93 -0.36 1.07 16 LS Contribution 402.45 15.07 6.06 6.06 Total: -1.00 -36.70 402.45 -9.57 -46.26 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -8.60 Total: 1.63 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: -0.04 Total: -4.76 kcal Atomic # 7 Polarization: -41.92 SS G_CDS: 0.08 Total: -41.84 kcal Atomic # 8 Polarization: -20.21 SS G_CDS: 0.16 Total: -20.05 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -36.70 -9.57 -46.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001065876442.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.580 kcal (2) G-P(sol) polarization free energy of solvation -36.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds