Wall clock time and date at job start Wed Apr 1 2020 01:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.53002 * 109.47233 * 240.00343 * 2 1 3 5 5 C 1.50703 * 109.46970 * 294.99898 * 4 2 1 6 6 O 1.21282 * 119.99998 * 359.97438 * 5 4 2 7 7 N 1.34777 * 120.00049 * 180.02562 * 5 4 2 8 8 C 1.44572 * 118.64373 * 359.97438 * 7 5 4 9 9 C 1.54873 * 109.59734 * 89.25044 * 8 7 5 10 10 C 1.47093 * 110.32083 * 71.27084 * 9 8 7 11 11 C 1.52570 * 114.32333 * 297.19764 * 10 9 8 12 12 H 1.08999 * 109.48729 * 325.04457 * 11 10 9 13 13 N 1.46507 * 109.49080 * 204.97922 * 11 10 9 14 14 C 1.34771 * 119.99873 * 154.99801 * 13 11 10 15 15 O 1.21277 * 120.00637 * 359.97438 * 14 13 11 16 16 C 1.50701 * 119.99790 * 180.02562 * 14 13 11 17 17 S 1.80997 * 109.47483 * 179.97438 * 16 14 13 18 18 C 1.76193 * 100.00357 * 179.97438 * 17 16 14 19 19 H 1.07999 * 119.99868 * 359.97438 * 18 17 16 20 20 C 1.38798 * 120.00240 * 180.02562 * 18 17 16 21 21 N 1.31632 * 120.00243 * 180.02562 * 20 18 17 22 22 Si 1.86802 * 119.99775 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.46959 * 90.00669 * 22 20 18 24 24 H 1.48505 * 109.47049 * 210.00474 * 22 20 18 25 25 H 1.48500 * 109.47364 * 330.00305 * 22 20 18 26 26 C 1.50882 * 109.36463 * 85.01294 * 11 10 9 27 27 C 1.47603 * 118.64274 * 179.72758 * 7 5 4 28 28 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 30 30 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 31 31 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 32 32 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 33 33 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 34 34 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 35 35 H 1.09000 * 109.47059 * 54.99596 * 4 2 1 36 36 H 1.08996 * 109.47073 * 174.99688 * 4 2 1 37 37 H 1.08990 * 109.45302 * 209.29009 * 8 7 5 38 38 H 1.09004 * 109.45391 * 329.21732 * 8 7 5 39 39 H 1.09001 * 109.32681 * 191.52638 * 9 8 7 40 40 H 1.08993 * 109.32872 * 311.00467 * 9 8 7 41 41 H 1.09000 * 108.51918 * 58.44756 * 10 9 8 42 42 H 1.09001 * 108.51198 * 175.94557 * 10 9 8 43 43 H 0.96995 * 119.99437 * 335.00276 * 13 11 10 44 44 H 1.09004 * 109.46822 * 300.00041 * 16 14 13 45 45 H 1.08997 * 109.47374 * 59.99990 * 16 14 13 46 46 H 0.97000 * 120.00193 * 179.97438 * 21 20 18 47 47 H 1.09006 * 109.36339 * 28.30384 * 26 11 10 48 48 H 1.08991 * 109.36839 * 148.04815 * 26 11 10 49 49 H 1.09001 * 108.94548 * 342.84421 * 27 7 5 50 50 H 1.09004 * 108.94836 * 101.46642 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6414 -2.1733 -1.1890 6 8 1.0118 -2.5903 -0.2400 7 7 1.9854 -3.0086 -2.1891 8 6 2.7363 -2.4805 -3.3059 9 6 4.2526 -2.5864 -3.0088 10 6 4.6868 -3.9907 -3.0627 11 6 4.0336 -4.8910 -2.0184 12 1 3.8783 -4.3273 -1.0984 13 7 4.9043 -6.0379 -1.7483 14 6 4.8253 -6.6802 -0.5662 15 8 4.0339 -6.3086 0.2743 16 6 5.7213 -7.8597 -0.2882 17 16 5.3794 -8.4996 1.3700 18 6 6.5312 -9.8317 1.4275 19 1 7.1711 -10.0291 0.5802 20 6 6.6154 -10.6280 2.5612 21 7 7.4762 -11.6229 2.6043 22 14 5.5080 -10.2869 4.0264 23 1 4.2460 -11.0563 3.8828 24 1 6.1988 -10.6976 5.2752 25 1 5.1989 -8.8356 4.0861 26 6 2.7047 -5.3795 -2.5398 27 6 1.5846 -4.4262 -2.0964 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8934 -0.5139 0.8900 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 3.1299 1.4426 -0.0005 35 1 1.6054 -0.2617 -2.1370 36 1 3.1263 -0.6442 -1.2952 37 1 2.5017 -3.0519 -4.2038 38 1 2.4692 -1.4351 -3.4611 39 1 4.8065 -2.0089 -3.7491 40 1 4.4548 -2.1840 -2.0163 41 1 4.4578 -4.3862 -4.0523 42 1 5.7672 -4.0246 -2.9218 43 1 5.5375 -6.3348 -2.4204 44 1 5.5333 -8.6404 -1.0253 45 1 6.7635 -7.5464 -0.3485 46 1 7.5353 -12.1791 3.3968 47 1 2.7370 -5.4214 -3.6286 48 1 2.5060 -6.3760 -2.1456 49 1 1.3164 -4.6513 -1.0642 50 1 0.7132 -4.5899 -2.7304 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001065876443.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:28:53 Heat of formation + Delta-G solvation = -90.753148 kcal Electronic energy + Delta-G solvation = -28337.876813 eV Core-core repulsion = 24490.587501 eV Total energy + Delta-G solvation = -3847.289313 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.176 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.88886 -39.49947 -37.84094 -35.84705 -35.06379 -33.21653 -32.43333 -32.17183 -29.44135 -28.32653 -27.34067 -26.75900 -25.63230 -25.06581 -22.52314 -21.01771 -20.63939 -20.24394 -18.95055 -17.84845 -17.43107 -16.81670 -16.47450 -16.38319 -15.75853 -15.10070 -15.00247 -14.93539 -14.62313 -14.49689 -14.17679 -13.99086 -13.69167 -13.50717 -13.35403 -13.12429 -12.89534 -12.78282 -12.51392 -12.31156 -12.20407 -12.05975 -11.94242 -11.76178 -11.33703 -11.28785 -11.24862 -11.13300 -10.99483 -10.99232 -10.91011 -10.88697 -10.57445 -9.84273 -9.77649 -9.48307 -9.11675 -8.98987 -8.78172 -8.48352 -6.90643 -6.28229 -3.99765 2.45706 2.74104 2.77752 2.98985 3.30363 3.35308 3.52719 3.65307 4.17443 4.34342 4.34545 4.37488 4.48541 4.50683 4.63919 4.73669 4.79070 4.87128 4.97405 4.99208 5.10930 5.11633 5.14626 5.22177 5.24640 5.28787 5.34193 5.41007 5.43072 5.47455 5.52101 5.60645 5.64000 5.71717 5.76124 5.79586 5.81106 5.89679 5.93867 6.01191 6.07607 6.11379 6.20909 6.37357 6.58984 7.15176 7.62526 7.94834 8.02913 8.41973 8.51783 9.18144 10.80938 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.015119 B = 0.002443 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.502413 B =11456.312106 C =12508.724358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.084 4.084 3 C -0.147 4.147 4 C -0.136 4.136 5 C 0.508 3.492 6 O -0.528 6.528 7 N -0.610 5.610 8 C 0.107 3.893 9 C -0.136 4.136 10 C -0.127 4.127 11 C 0.151 3.849 12 H 0.089 0.911 13 N -0.735 5.735 14 C 0.529 3.471 15 O -0.514 6.514 16 C -0.124 4.124 17 S -0.141 6.141 18 C -0.521 4.521 19 H 0.088 0.912 20 C 0.095 3.905 21 N -0.881 5.881 22 Si 0.856 3.144 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 C -0.140 4.140 27 C 0.115 3.885 28 H 0.074 0.926 29 H 0.051 0.949 30 H 0.045 0.955 31 H 0.079 0.921 32 H 0.053 0.947 33 H 0.057 0.943 34 H 0.054 0.946 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.069 0.931 43 H 0.398 0.602 44 H 0.096 0.904 45 H 0.096 0.904 46 H 0.271 0.729 47 H 0.067 0.933 48 H 0.085 0.915 49 H 0.096 0.904 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.126 24.933 -17.750 31.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.103 4.103 3 C -0.204 4.204 4 C -0.175 4.175 5 C 0.296 3.704 6 O -0.404 6.404 7 N -0.343 5.343 8 C -0.017 4.017 9 C -0.175 4.175 10 C -0.165 4.165 11 C 0.046 3.954 12 H 0.107 0.893 13 N -0.389 5.389 14 C 0.315 3.685 15 O -0.388 6.388 16 C -0.275 4.275 17 S 0.085 5.915 18 C -0.669 4.669 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.517 5.517 22 Si 0.681 3.319 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.159 1.159 26 C -0.180 4.180 27 C -0.007 4.007 28 H 0.093 0.907 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.097 0.903 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.109 0.891 36 H 0.111 0.889 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.099 0.901 40 H 0.087 0.913 41 H 0.085 0.915 42 H 0.088 0.912 43 H 0.232 0.768 44 H 0.114 0.886 45 H 0.114 0.886 46 H 0.080 0.920 47 H 0.085 0.915 48 H 0.103 0.897 49 H 0.114 0.886 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.711 25.153 -15.742 31.547 hybrid contribution 1.125 -0.826 -0.828 1.623 sum -9.585 24.327 -16.570 30.955 Atomic orbital electron populations 1.21951 0.94752 1.03390 1.00891 1.20897 0.96653 0.95336 0.97389 1.21855 1.00899 0.95793 1.01898 1.21853 1.02823 0.92163 1.00704 1.20843 0.79244 0.88533 0.81776 1.90698 1.39377 1.77701 1.32639 1.47780 1.55719 1.09411 1.21436 1.21642 0.90780 0.99804 0.89457 1.21252 0.96277 0.96849 1.03109 1.20714 1.01256 0.95405 0.99094 1.20316 0.88966 0.86842 0.99269 0.89269 1.46134 1.41885 1.33041 1.17867 1.20300 0.83500 0.83572 0.81148 1.90729 1.37405 1.65495 1.45134 1.23284 1.01836 0.97970 1.04387 1.84835 1.53957 1.39395 1.13270 1.22317 1.23465 1.14842 1.06267 0.89421 1.24714 0.94850 0.93714 0.98046 1.69939 1.34678 1.17401 1.29712 0.86739 0.81119 0.81889 0.82141 1.19191 1.19940 1.15895 1.22156 0.94741 1.00138 1.00938 1.21708 0.96017 0.78875 1.04108 0.90698 0.92940 0.93545 0.90269 0.92773 0.92364 0.92667 0.89071 0.88916 0.90150 0.90084 0.90109 0.91346 0.91469 0.91186 0.76838 0.88578 0.88573 0.91950 0.91457 0.89684 0.88603 0.91919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 8.93 37.16 0.33 -1.06 16 2 C -0.08 -0.72 2.57 -90.62 -0.23 -0.95 16 3 C -0.15 -0.94 9.19 37.16 0.34 -0.60 16 4 C -0.14 -1.01 3.67 -27.88 -0.10 -1.11 16 5 C 0.51 5.57 7.34 -10.98 -0.08 5.49 16 6 O -0.53 -8.11 13.24 5.56 0.07 -8.03 16 7 N -0.61 -5.53 2.25 -172.74 -0.39 -5.91 16 8 C 0.11 0.58 5.17 -4.08 -0.02 0.56 16 9 C -0.14 -0.75 5.62 -28.58 -0.16 -0.91 16 10 C -0.13 -0.88 4.69 -29.79 -0.14 -1.02 16 11 C 0.15 1.64 2.06 -69.21 -0.14 1.50 16 12 H 0.09 1.29 6.91 -51.93 -0.36 0.93 16 13 N -0.74 -9.07 4.93 -55.06 -0.27 -9.34 16 14 C 0.53 9.37 7.67 -10.99 -0.08 9.29 16 15 O -0.51 -11.27 15.52 5.56 0.09 -11.18 16 16 C -0.12 -2.40 6.16 36.01 0.22 -2.18 16 17 S -0.14 -3.62 18.55 -107.50 -1.99 -5.61 16 18 C -0.52 -15.13 10.04 30.94 0.31 -14.82 16 19 H 0.09 2.64 8.03 -52.49 -0.42 2.22 16 20 C 0.10 2.82 5.50 -17.43 -0.10 2.72 16 21 N -0.88 -26.75 13.97 55.49 0.78 -25.97 16 22 Si 0.86 22.11 27.74 -169.99 -4.71 17.39 16 23 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 25 H -0.23 -6.09 6.74 56.52 0.38 -5.71 16 26 C -0.14 -1.41 5.38 -27.47 -0.15 -1.56 16 27 C 0.12 1.22 6.07 -3.11 -0.02 1.20 16 28 H 0.07 0.87 5.95 -51.93 -0.31 0.56 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.08 0.86 7.95 -51.93 -0.41 0.44 16 32 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.09 0.48 7.30 -51.93 -0.38 0.10 16 36 H 0.09 0.57 7.08 -51.93 -0.37 0.20 16 37 H 0.08 0.35 8.07 -51.93 -0.42 -0.07 16 38 H 0.08 0.29 6.26 -51.93 -0.32 -0.03 16 39 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.07 0.47 7.27 -51.93 -0.38 0.09 16 41 H 0.07 0.37 7.36 -51.93 -0.38 -0.01 16 42 H 0.07 0.49 8.04 -51.93 -0.42 0.07 16 43 H 0.40 3.71 8.60 -40.82 -0.35 3.36 16 44 H 0.10 1.72 8.14 -51.91 -0.42 1.30 16 45 H 0.10 1.73 8.14 -51.92 -0.42 1.31 16 46 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 47 H 0.07 0.51 7.32 -51.93 -0.38 0.13 16 48 H 0.08 1.05 7.85 -51.93 -0.41 0.64 16 49 H 0.10 1.37 6.95 -51.93 -0.36 1.01 16 50 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 399.75 15.07 6.02 6.02 Total: -1.00 -36.31 399.75 -9.06 -45.37 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -8.63 Total: 0.71 kcal Atomic # 6 Polarization: -3.43 SS G_CDS: -0.02 Total: -3.45 kcal Atomic # 7 Polarization: -41.34 SS G_CDS: 0.12 Total: -41.23 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: 0.16 Total: -19.22 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.71 Total: 17.39 kcal Atomic # 16 Polarization: -3.62 SS G_CDS: -1.99 Total: -5.61 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -36.31 -9.06 -45.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001065876443.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.381 kcal (2) G-P(sol) polarization free energy of solvation -36.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds