Wall clock time and date at job start Wed Apr 1 2020 01:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47253 * 2 1 4 4 C 1.53006 * 109.47001 * 179.97438 * 3 2 1 5 5 C 1.50695 * 109.47047 * 180.02562 * 4 3 2 6 6 O 1.21289 * 119.99922 * 0.02562 * 5 4 3 7 7 N 1.34771 * 120.00288 * 179.97438 * 5 4 3 8 8 C 1.44578 * 118.64072 * 0.02562 * 7 5 4 9 9 C 1.54860 * 109.59935 * 270.74613 * 8 7 5 10 10 C 1.47096 * 110.32393 * 288.73152 * 9 8 7 11 11 C 1.52566 * 114.32320 * 62.80169 * 10 9 8 12 12 H 1.09000 * 109.49318 * 34.95566 * 11 10 9 13 13 N 1.46508 * 109.49159 * 155.02259 * 11 10 9 14 14 C 1.34776 * 119.99892 * 205.00265 * 13 11 10 15 15 O 1.21281 * 120.00227 * 359.97438 * 14 13 11 16 16 C 1.50702 * 119.99426 * 180.02562 * 14 13 11 17 17 S 1.81000 * 109.47021 * 179.97438 * 16 14 13 18 18 C 1.76198 * 100.00261 * 179.97438 * 17 16 14 19 19 H 1.07998 * 119.99810 * 359.97438 * 18 17 16 20 20 C 1.38791 * 120.00181 * 179.97438 * 18 17 16 21 21 N 1.31633 * 120.00228 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00280 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47205 * 90.00227 * 22 20 18 24 24 H 1.48505 * 109.47508 * 210.00176 * 22 20 18 25 25 H 1.48503 * 109.47051 * 330.00075 * 22 20 18 26 26 C 1.50880 * 109.36192 * 274.98946 * 11 10 9 27 27 C 1.47605 * 118.64707 * 180.02562 * 7 5 4 28 28 H 1.08999 * 109.46926 * 299.99591 * 1 2 3 29 29 H 1.08992 * 109.47307 * 59.99899 * 1 2 3 30 30 H 1.08997 * 109.47433 * 180.02562 * 1 2 3 31 31 H 1.09009 * 109.46838 * 239.99838 * 2 1 3 32 32 H 1.09004 * 109.46971 * 120.00727 * 2 1 3 33 33 H 1.08999 * 109.46821 * 60.00344 * 3 2 1 34 34 H 1.08992 * 109.47047 * 300.00260 * 3 2 1 35 35 H 1.08999 * 109.47013 * 60.00509 * 4 3 2 36 36 H 1.08997 * 109.46851 * 300.00383 * 4 3 2 37 37 H 1.09008 * 109.45245 * 150.70836 * 8 7 5 38 38 H 1.09002 * 109.42845 * 30.77332 * 8 7 5 39 39 H 1.09001 * 109.32868 * 168.47349 * 9 8 7 40 40 H 1.08994 * 109.32698 * 48.99257 * 9 8 7 41 41 H 1.09002 * 108.51303 * 184.05335 * 10 9 8 42 42 H 1.08995 * 108.51439 * 301.55010 * 10 9 8 43 43 H 0.97000 * 119.99457 * 24.99627 * 13 11 10 44 44 H 1.09003 * 109.46916 * 299.99650 * 16 14 13 45 45 H 1.08998 * 109.47661 * 59.99798 * 16 14 13 46 46 H 0.96998 * 120.00855 * 180.02562 * 21 20 18 47 47 H 1.09003 * 109.36457 * 331.69136 * 26 11 10 48 48 H 1.09008 * 109.26452 * 212.01479 * 26 11 10 49 49 H 1.08998 * 108.94859 * 258.53456 * 27 7 5 50 50 H 1.09000 * 108.94649 * 17.16268 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 6 4.0724 2.8631 0.0013 6 8 3.2843 3.7850 0.0017 7 7 5.3974 3.1094 0.0024 8 6 6.3106 1.9886 0.0025 9 6 6.6229 1.5730 1.4612 10 6 7.4734 2.5831 2.1093 11 6 6.8273 3.9591 2.2388 12 1 5.7586 3.8436 2.4195 13 7 7.4372 4.6823 3.3574 14 6 6.7482 5.6545 3.9872 15 8 5.6234 5.9310 3.6275 16 6 7.3759 6.3987 5.1375 17 16 6.2099 7.6320 5.7663 18 6 7.1742 8.3309 7.0648 19 1 8.1718 7.9631 7.2546 20 6 6.6520 9.3540 7.8437 21 7 5.4359 9.8020 7.6127 22 14 7.6740 10.0945 9.2208 23 1 8.4638 11.2357 8.6924 24 1 6.7755 10.5729 10.3020 25 1 8.5954 9.0636 9.7627 26 6 7.0409 4.7342 0.9620 27 6 5.8564 4.5123 0.0036 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8901 32 1 1.8933 -0.5140 0.8900 33 1 1.6767 1.9562 0.8900 34 1 1.6767 1.9563 -0.8899 35 1 3.9337 0.9285 -0.8892 36 1 3.9329 0.9286 0.8908 37 1 7.2353 2.2736 -0.4995 38 1 5.8553 1.1499 -0.5243 39 1 7.1397 0.6133 1.4602 40 1 5.6900 1.4769 2.0165 41 1 7.7340 2.2280 3.1064 42 1 8.3916 2.6850 1.5310 43 1 8.3369 4.4613 3.6448 44 1 7.6254 5.6956 5.9322 45 1 8.2828 6.8976 4.7959 46 1 5.0710 10.5173 8.1567 47 1 7.9606 4.3968 0.4839 48 1 7.1232 5.7958 1.1952 49 1 6.1620 4.7856 -1.0063 50 1 5.0300 5.1548 0.3076 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001065876538.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:28:57 Heat of formation + Delta-G solvation = -95.567543 kcal Electronic energy + Delta-G solvation = -27923.535927 eV Core-core repulsion = 24076.037847 eV Total energy + Delta-G solvation = -3847.498080 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.176 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.76946 -39.34007 -37.65199 -35.63395 -34.98237 -33.19166 -32.41726 -32.17295 -30.56537 -29.00852 -26.82835 -25.65791 -25.40741 -24.51556 -22.17521 -21.21514 -20.84236 -20.28543 -18.94119 -17.81305 -17.31455 -16.68420 -16.45975 -16.25509 -16.05424 -15.10185 -14.88390 -14.79292 -14.57466 -14.40175 -14.21401 -14.00957 -13.79349 -13.59675 -13.23749 -13.05886 -12.92338 -12.64481 -12.52313 -12.45243 -11.97732 -11.86819 -11.76479 -11.61089 -11.35358 -11.26141 -11.16820 -11.05516 -11.02552 -10.99161 -10.83574 -10.81594 -10.73679 -9.83435 -9.80058 -9.34909 -9.06834 -9.01853 -8.72388 -8.21193 -6.48264 -6.20091 -3.90710 2.50415 2.79555 3.03841 3.12332 3.22976 3.28467 3.32452 3.70780 4.20528 4.21594 4.39035 4.41044 4.54178 4.57254 4.67480 4.84686 4.86476 4.96156 4.98218 5.06929 5.14773 5.15237 5.16864 5.17235 5.27054 5.31465 5.45631 5.47412 5.54232 5.55917 5.58858 5.63980 5.66433 5.67772 5.84677 5.88006 5.89115 5.90162 5.99257 6.00991 6.12994 6.14159 6.15288 6.40532 6.68949 7.19364 7.60584 7.73675 8.06579 8.36389 8.65295 9.24899 10.87264 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.015186 B = 0.002185 C = 0.002024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.304222 B =12811.386386 C =13830.904273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.108 4.108 4 C -0.139 4.139 5 C 0.506 3.494 6 O -0.531 6.531 7 N -0.610 5.610 8 C 0.108 3.892 9 C -0.136 4.136 10 C -0.126 4.126 11 C 0.151 3.849 12 H 0.089 0.911 13 N -0.737 5.737 14 C 0.530 3.470 15 O -0.512 6.512 16 C -0.153 4.153 17 S -0.059 6.059 18 C -0.536 4.536 19 H 0.072 0.928 20 C 0.073 3.927 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 C -0.140 4.140 27 C 0.115 3.885 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.066 0.934 43 H 0.396 0.604 44 H 0.088 0.912 45 H 0.089 0.911 46 H 0.268 0.732 47 H 0.066 0.934 48 H 0.085 0.915 49 H 0.063 0.937 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.618 -23.525 -18.330 30.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.161 4.161 3 C -0.146 4.146 4 C -0.179 4.179 5 C 0.294 3.706 6 O -0.407 6.407 7 N -0.344 5.344 8 C -0.016 4.016 9 C -0.175 4.175 10 C -0.164 4.164 11 C 0.046 3.954 12 H 0.107 0.893 13 N -0.391 5.391 14 C 0.316 3.684 15 O -0.385 6.385 16 C -0.304 4.304 17 S 0.167 5.833 18 C -0.684 4.684 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.502 5.502 22 Si 0.745 3.255 23 H -0.203 1.203 24 H -0.207 1.207 25 H -0.197 1.197 26 C -0.179 4.179 27 C -0.007 4.007 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.109 0.891 36 H 0.111 0.889 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.098 0.902 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.085 0.915 43 H 0.230 0.770 44 H 0.107 0.893 45 H 0.107 0.893 46 H 0.078 0.922 47 H 0.084 0.916 48 H 0.103 0.897 49 H 0.081 0.919 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 1.176 -22.417 -18.877 29.330 hybrid contribution 2.671 0.043 1.517 3.072 sum 3.847 -22.374 -17.360 28.579 Atomic orbital electron populations 1.21763 0.95681 1.01474 1.02170 1.21537 0.96212 0.96561 1.01811 1.21410 0.92729 0.96608 1.03835 1.21775 0.98146 0.93945 1.04039 1.20873 0.82043 0.91863 0.75792 1.90738 1.54886 1.46506 1.48594 1.47771 1.05950 1.06778 1.73857 1.21640 0.94455 0.88924 0.96616 1.21251 1.01045 0.98782 0.96405 1.20712 0.99399 0.94448 1.01873 1.20290 0.99387 0.90105 0.85626 0.89294 1.46173 1.19134 1.38772 1.35067 1.20330 0.85919 0.79176 0.82971 1.90733 1.18362 1.64341 1.65087 1.23536 1.05291 1.03242 0.98332 1.85448 1.19191 1.38534 1.40101 1.22863 1.03364 1.23358 1.18811 0.90970 1.24997 0.95295 0.95823 0.97528 1.70019 1.14642 1.26568 1.39000 0.86169 0.79538 0.79210 0.80572 1.20283 1.20749 1.19723 1.22211 0.97749 1.02437 0.95539 1.21786 0.98408 0.81721 0.98825 0.92510 0.92683 0.92840 0.92151 0.91991 0.90994 0.91249 0.89096 0.88896 0.90172 0.90092 0.90164 0.91329 0.91249 0.91544 0.77017 0.89350 0.89310 0.92177 0.91562 0.89671 0.91888 0.88571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.91 37.16 0.37 -0.68 16 2 C -0.12 -0.82 5.93 -26.73 -0.16 -0.98 16 3 C -0.11 -0.95 4.50 -26.73 -0.12 -1.07 16 4 C -0.14 -1.08 4.20 -27.88 -0.12 -1.19 16 5 C 0.51 5.93 7.62 -10.99 -0.08 5.85 16 6 O -0.53 -8.81 15.26 5.55 0.08 -8.73 16 7 N -0.61 -5.91 2.24 -172.52 -0.39 -6.29 16 8 C 0.11 0.63 5.17 -4.09 -0.02 0.60 16 9 C -0.14 -0.80 5.62 -28.58 -0.16 -0.96 16 10 C -0.13 -0.94 4.69 -29.79 -0.14 -1.08 16 11 C 0.15 1.75 2.06 -69.21 -0.14 1.60 16 12 H 0.09 1.36 6.92 -51.93 -0.36 1.00 16 13 N -0.74 -9.68 4.93 -55.06 -0.27 -9.95 16 14 C 0.53 9.96 7.66 -10.98 -0.08 9.87 16 15 O -0.51 -11.90 15.53 5.56 0.09 -11.81 16 16 C -0.15 -3.11 6.16 36.01 0.22 -2.89 16 17 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 18 C -0.54 -15.41 9.50 30.94 0.29 -15.11 16 19 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 20 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 21 N -0.87 -26.47 13.22 55.49 0.73 -25.74 16 22 Si 0.92 21.59 29.55 -169.99 -5.02 16.56 16 23 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 26 C -0.14 -1.50 5.39 -27.29 -0.15 -1.65 16 27 C 0.11 1.30 6.11 -2.93 -0.02 1.28 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.34 8.14 -51.92 -0.42 -0.09 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.78 8.10 -51.93 -0.42 0.36 16 34 H 0.07 0.68 8.10 -51.93 -0.42 0.26 16 35 H 0.09 0.48 7.30 -51.93 -0.38 0.10 16 36 H 0.09 0.59 7.08 -51.93 -0.37 0.23 16 37 H 0.08 0.38 8.07 -51.92 -0.42 -0.04 16 38 H 0.08 0.31 6.26 -51.93 -0.32 -0.01 16 39 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.07 0.50 7.27 -51.93 -0.38 0.13 16 41 H 0.07 0.52 8.04 -51.93 -0.42 0.10 16 42 H 0.07 0.39 7.36 -51.93 -0.38 0.01 16 43 H 0.40 3.97 8.60 -40.82 -0.35 3.62 16 44 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 45 H 0.09 1.66 8.14 -51.92 -0.42 1.23 16 46 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 47 H 0.07 0.54 7.32 -51.93 -0.38 0.16 16 48 H 0.08 1.12 7.84 -51.92 -0.41 0.71 16 49 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 50 H 0.10 1.46 6.95 -51.93 -0.36 1.09 16 LS Contribution 407.23 15.07 6.14 6.14 Total: -1.00 -37.21 407.23 -9.97 -47.18 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -8.72 Total: 0.91 kcal Atomic # 6 Polarization: -4.01 SS G_CDS: -0.41 Total: -4.42 kcal Atomic # 7 Polarization: -42.06 SS G_CDS: 0.08 Total: -41.99 kcal Atomic # 8 Polarization: -20.71 SS G_CDS: 0.17 Total: -20.54 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -37.21 -9.97 -47.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001065876538.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.386 kcal (2) G-P(sol) polarization free energy of solvation -37.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds