Wall clock time and date at job start Wed Apr 1 2020 01:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.52997 * 109.47592 * 300.00035 * 3 2 1 5 5 C 1.52997 * 109.46991 * 60.00378 * 3 2 1 6 6 C 1.50706 * 109.46957 * 180.02562 * 3 2 1 7 7 O 1.21279 * 119.99692 * 359.97438 * 6 3 2 8 8 N 1.34777 * 120.00142 * 180.02562 * 6 3 2 9 9 C 1.46496 * 119.99867 * 180.02562 * 8 6 3 10 10 H 1.09004 * 109.49912 * 325.06043 * 9 8 6 11 11 C 1.53047 * 109.49412 * 204.99872 * 9 8 6 12 12 C 1.53044 * 109.53474 * 178.68179 * 11 9 8 13 13 C 1.53197 * 109.31107 * 61.36375 * 12 11 9 14 14 N 1.46915 * 108.77647 * 305.36000 * 13 12 11 15 15 C 1.34781 * 120.63583 * 233.58587 * 14 13 12 16 16 O 1.21277 * 120.00314 * 180.02562 * 15 14 13 17 17 C 1.50701 * 119.99356 * 0.02562 * 15 14 13 18 18 S 1.81004 * 109.46936 * 179.97438 * 17 15 14 19 19 C 1.76192 * 100.00206 * 179.97438 * 18 17 15 20 20 H 1.08001 * 120.00114 * 359.97438 * 19 18 17 21 21 C 1.38800 * 120.00054 * 180.02562 * 19 18 17 22 22 N 1.31627 * 120.00068 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99749 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47354 * 90.00216 * 23 21 19 25 25 H 1.48504 * 109.46857 * 209.99763 * 23 21 19 26 26 H 1.48500 * 109.47238 * 329.99745 * 23 21 19 27 27 C 1.46930 * 118.74020 * 53.61376 * 14 13 12 28 28 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 29 29 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 30 30 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.46955 * 120.00472 * 2 1 3 32 32 H 1.09000 * 109.47050 * 240.00301 * 2 1 3 33 33 H 1.09002 * 109.47045 * 60.00253 * 4 3 2 34 34 H 1.09001 * 109.47375 * 180.02562 * 4 3 2 35 35 H 1.09000 * 109.47140 * 300.00346 * 4 3 2 36 36 H 1.09000 * 109.47611 * 59.99933 * 5 3 2 37 37 H 1.09001 * 109.47289 * 179.97438 * 5 3 2 38 38 H 1.09002 * 109.47153 * 299.99445 * 5 3 2 39 39 H 0.96999 * 120.00047 * 359.97438 * 8 6 3 40 40 H 1.08997 * 109.45998 * 298.69893 * 11 9 8 41 41 H 1.08995 * 109.46309 * 58.66484 * 11 9 8 42 42 H 1.08998 * 109.49498 * 181.31555 * 12 11 9 43 43 H 1.09004 * 109.49744 * 301.38005 * 12 11 9 44 44 H 1.09002 * 109.58318 * 65.15389 * 13 12 11 45 45 H 1.09009 * 109.58192 * 185.57536 * 13 12 11 46 46 H 1.09000 * 109.47092 * 299.99501 * 17 15 14 47 47 H 1.08990 * 109.47294 * 59.99691 * 17 15 14 48 48 H 0.96995 * 119.99986 * 180.02562 * 22 21 19 49 49 H 1.08990 * 109.58947 * 186.60215 * 27 14 13 50 50 H 1.08998 * 109.58509 * 66.17134 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.5299 2.1638 -1.2492 5 6 1.5299 2.1637 1.2493 6 6 3.5470 1.4426 -0.0006 7 8 4.1534 0.3923 -0.0006 8 7 4.2208 2.6098 -0.0002 9 6 5.6858 2.6099 -0.0014 10 1 6.0501 1.7671 0.5861 11 6 6.1970 3.9169 0.6089 12 6 7.7271 3.9040 0.6383 13 6 8.2604 3.7980 -0.7939 14 7 7.6593 2.6214 -1.4365 15 6 8.4354 1.6814 -2.0115 16 8 7.9270 0.7149 -2.5391 17 6 9.9349 1.8314 -1.9989 18 16 10.6896 0.4188 -2.8421 19 6 12.3926 0.8422 -2.6842 20 1 12.6779 1.7531 -2.1788 21 6 13.3674 0.0058 -3.2100 22 7 13.0197 -1.1041 -3.8264 23 14 15.1729 0.4552 -3.0431 24 1 15.7116 -0.1192 -1.7842 25 1 15.9279 -0.0912 -4.1993 26 1 15.3144 1.9331 -3.0133 27 6 6.1960 2.4891 -1.4408 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5139 0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 0.4399 2.1638 -1.2492 34 1 1.8936 3.1914 -1.2494 35 1 1.8933 1.6500 -2.1392 36 1 1.8933 1.6499 2.1393 37 1 1.8935 3.1912 1.2496 38 1 0.4399 2.1636 1.2493 39 1 3.7358 3.4499 0.0001 40 1 5.8525 4.7579 0.0072 41 1 5.8152 4.0171 1.6249 42 1 8.0900 4.8251 1.0944 43 1 8.0726 3.0493 1.2199 44 1 7.9922 4.6957 -1.3511 45 1 9.3448 3.6888 -0.7729 46 1 10.2123 2.7520 -2.5123 47 1 10.2875 1.8697 -0.9683 48 1 13.7009 -1.6888 -4.1935 49 1 5.9182 1.5165 -1.8466 50 1 5.7595 3.2801 -2.0507 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070452864.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:10:48 Heat of formation + Delta-G solvation = -92.531583 kcal Electronic energy + Delta-G solvation = -28191.177393 eV Core-core repulsion = 24343.810962 eV Total energy + Delta-G solvation = -3847.366431 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.176 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.75474 -39.67574 -37.50092 -36.46578 -34.76081 -32.42536 -32.36562 -31.13887 -30.06177 -28.53150 -27.81041 -25.57197 -25.28781 -25.05408 -23.52041 -21.71364 -21.10567 -19.36758 -18.89146 -17.71163 -17.19773 -16.72849 -16.34397 -15.88616 -15.36647 -15.25152 -14.90381 -14.78487 -14.59557 -14.40622 -14.32728 -13.91888 -13.77770 -13.30259 -13.15767 -13.05374 -12.92693 -12.76935 -12.54192 -12.45663 -12.33694 -11.93222 -11.83140 -11.76820 -11.61680 -11.29162 -11.22820 -11.04662 -10.99798 -10.98400 -10.93064 -10.80536 -10.72953 -9.83427 -9.78185 -9.47705 -9.27563 -9.04495 -8.45471 -8.18783 -6.47239 -6.19033 -3.89554 2.47138 2.71114 3.07722 3.12017 3.23760 3.28583 3.32241 3.63732 4.22042 4.24990 4.30702 4.43182 4.48493 4.59332 4.67626 4.80500 4.84825 4.96702 5.00964 5.10587 5.12443 5.15745 5.15838 5.19525 5.25096 5.32566 5.38020 5.41638 5.53779 5.56088 5.57421 5.61464 5.66665 5.67351 5.70066 5.76881 5.84521 5.89752 5.96020 5.98251 6.02201 6.09791 6.13123 6.21496 6.66317 7.26694 7.57693 7.61746 8.06396 8.37333 8.60581 9.25874 10.88386 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.020472 B = 0.002214 C = 0.002062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.378181 B =12645.585766 C =13576.714796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.102 4.102 3 C -0.081 4.081 4 C -0.143 4.143 5 C -0.141 4.141 6 C 0.519 3.481 7 O -0.525 6.525 8 N -0.725 5.725 9 C 0.131 3.869 10 H 0.093 0.907 11 C -0.124 4.124 12 C -0.132 4.132 13 C 0.105 3.895 14 N -0.619 5.619 15 C 0.534 3.466 16 O -0.511 6.511 17 C -0.149 4.149 18 S -0.061 6.061 19 C -0.535 4.535 20 H 0.072 0.928 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 C 0.106 3.894 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.058 0.942 38 H 0.071 0.929 39 H 0.398 0.602 40 H 0.069 0.931 41 H 0.071 0.929 42 H 0.081 0.919 43 H 0.073 0.927 44 H 0.068 0.932 45 H 0.093 0.907 46 H 0.089 0.911 47 H 0.089 0.911 48 H 0.268 0.732 49 H 0.097 0.903 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.440 14.948 11.510 30.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.140 4.140 3 C -0.085 4.085 4 C -0.200 4.200 5 C -0.199 4.199 6 C 0.305 3.695 7 O -0.399 6.399 8 N -0.377 5.377 9 C 0.025 3.975 10 H 0.111 0.889 11 C -0.162 4.162 12 C -0.171 4.171 13 C -0.018 4.018 14 N -0.356 5.356 15 C 0.322 3.678 16 O -0.384 6.384 17 C -0.300 4.300 18 S 0.166 5.834 19 C -0.683 4.683 20 H 0.090 0.910 21 C -0.136 4.136 22 N -0.502 5.502 23 Si 0.745 3.255 24 H -0.203 1.203 25 H -0.208 1.208 26 H -0.197 1.197 27 C -0.018 4.018 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.090 0.910 39 H 0.233 0.767 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.100 0.900 43 H 0.091 0.909 44 H 0.086 0.914 45 H 0.111 0.889 46 H 0.107 0.893 47 H 0.108 0.892 48 H 0.078 0.922 49 H 0.115 0.885 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -24.677 12.550 10.611 29.648 hybrid contribution 1.578 1.939 0.752 2.610 sum -23.099 14.489 11.363 29.540 Atomic orbital electron populations 1.21917 0.95492 1.01944 1.01866 1.21370 0.95383 0.93552 1.03699 1.20825 0.91222 0.98652 0.97762 1.21925 1.02052 0.99803 0.96263 1.21911 1.02069 0.99747 0.96153 1.20658 0.89788 0.83640 0.75407 1.90780 1.70088 1.31169 1.47904 1.45982 1.06655 1.08743 1.76328 1.21333 0.79394 0.99526 0.97242 0.88875 1.21788 0.96512 0.96576 1.01342 1.21900 0.94616 1.03277 0.97322 1.21758 0.99404 0.88137 0.92502 1.48033 1.05710 1.23312 1.58514 1.20368 0.88846 0.81475 0.77125 1.90713 1.74914 1.29682 1.43114 1.23546 0.93564 1.07282 1.05571 1.85465 1.02193 1.23576 1.72173 1.22854 0.91239 1.10964 1.43245 0.90954 1.24997 0.99566 0.94532 0.94540 1.70020 1.34124 1.11261 1.34821 0.86170 0.82733 0.78678 0.77918 1.20278 1.20768 1.19709 1.21819 0.80326 1.03927 0.95753 0.92477 0.92383 0.92484 0.91216 0.91023 0.91001 0.92277 0.91810 0.92050 0.92304 0.91014 0.76736 0.91208 0.91054 0.90043 0.90869 0.91406 0.88900 0.89265 0.89243 0.92191 0.88453 0.91966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.96 9.21 37.16 0.34 -0.62 16 2 C -0.10 -0.90 4.28 -26.73 -0.11 -1.01 16 3 C -0.08 -0.63 0.64 -155.66 -0.10 -0.73 16 4 C -0.14 -0.87 8.02 37.16 0.30 -0.57 16 5 C -0.14 -0.77 8.02 37.16 0.30 -0.47 16 6 C 0.52 5.81 6.45 -10.98 -0.07 5.74 16 7 O -0.52 -8.65 15.64 5.56 0.09 -8.56 16 8 N -0.72 -6.30 4.86 -53.68 -0.26 -6.56 16 9 C 0.13 1.40 2.61 -67.81 -0.18 1.22 16 10 H 0.09 1.30 7.58 -51.93 -0.39 0.91 16 11 C -0.12 -0.91 5.36 -26.68 -0.14 -1.06 16 12 C -0.13 -1.09 6.08 -26.61 -0.16 -1.25 16 13 C 0.11 1.11 6.34 -3.71 -0.02 1.09 16 14 N -0.62 -9.17 2.97 -172.77 -0.51 -9.68 16 15 C 0.53 10.72 7.72 -10.98 -0.08 10.64 16 16 O -0.51 -12.52 15.27 5.56 0.08 -12.43 16 17 C -0.15 -3.11 4.50 36.01 0.16 -2.95 16 18 S -0.06 -1.70 20.57 -107.50 -2.21 -3.91 16 19 C -0.53 -15.41 9.50 30.94 0.29 -15.12 16 20 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 21 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 22 N -0.87 -26.54 13.22 55.49 0.73 -25.81 16 23 Si 0.92 21.60 29.55 -169.99 -5.02 16.58 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 26 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 27 C 0.11 1.43 6.01 -3.71 -0.02 1.40 16 28 H 0.06 0.29 6.43 -51.93 -0.33 -0.04 16 29 H 0.06 0.32 6.43 -51.93 -0.33 -0.02 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.70 8.10 -51.93 -0.42 0.27 16 32 H 0.07 0.75 8.10 -51.93 -0.42 0.33 16 33 H 0.07 0.34 6.43 -51.93 -0.33 0.00 16 34 H 0.06 0.27 7.56 -51.93 -0.39 -0.12 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.06 0.24 7.56 -51.93 -0.39 -0.16 16 38 H 0.07 0.30 6.43 -51.93 -0.33 -0.03 16 39 H 0.40 2.16 7.44 -40.82 -0.30 1.85 16 40 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.09 1.01 5.93 -51.92 -0.31 0.71 16 46 H 0.09 1.70 7.94 -51.92 -0.41 1.29 16 47 H 0.09 1.72 7.69 -51.92 -0.40 1.32 16 48 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 49 H 0.10 1.70 7.00 -51.93 -0.36 1.34 16 50 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 403.66 15.07 6.08 6.08 Total: -1.00 -37.46 403.66 -9.11 -46.57 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -8.49 Total: -0.62 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: 0.40 Total: -1.67 kcal Atomic # 7 Polarization: -42.01 SS G_CDS: -0.04 Total: -42.05 kcal Atomic # 8 Polarization: -21.16 SS G_CDS: 0.17 Total: -20.99 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -37.46 -9.11 -46.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070452864.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.960 kcal (2) G-P(sol) polarization free energy of solvation -37.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds