Wall clock time and date at job start Wed Apr 1 2020 00:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53000 * 109.47265 * 2 1 4 4 C 1.50704 * 112.84981 * 297.24271 * 3 2 1 5 5 O 1.21280 * 119.99822 * 113.52897 * 4 3 2 6 6 N 1.34773 * 119.99881 * 293.52691 * 4 3 2 7 7 C 1.46499 * 120.00340 * 175.02468 * 6 4 3 8 8 C 1.52994 * 109.47487 * 180.02562 * 7 6 4 9 9 C 1.52999 * 109.47244 * 180.02562 * 8 7 6 10 10 H 1.09008 * 109.47142 * 305.00117 * 9 8 7 11 11 C 1.52996 * 109.47482 * 185.00064 * 9 8 7 12 12 N 1.46500 * 109.46993 * 65.00175 * 9 8 7 13 13 C 1.34786 * 119.99807 * 205.00065 * 12 9 8 14 14 O 1.21274 * 120.00290 * 0.02562 * 13 12 9 15 15 C 1.50701 * 119.99524 * 180.27609 * 13 12 9 16 16 S 1.81008 * 109.46810 * 179.72694 * 15 13 12 17 17 C 1.76200 * 99.99738 * 180.02562 * 16 15 13 18 18 H 1.08000 * 120.00184 * 359.97438 * 17 16 15 19 19 C 1.38801 * 119.99925 * 180.02562 * 17 16 15 20 20 N 1.31627 * 120.00390 * 179.97438 * 19 17 16 21 21 Si 1.86804 * 119.99614 * 359.97438 * 19 17 16 22 22 H 1.48494 * 109.46930 * 90.00528 * 21 19 17 23 23 H 1.48503 * 109.46879 * 209.99955 * 21 19 17 24 24 H 1.48497 * 109.47221 * 330.00290 * 21 19 17 25 25 C 1.53787 * 113.69101 * 68.50808 * 3 2 1 26 26 C 1.53783 * 87.07854 * 89.12584 * 25 3 2 27 27 C 1.53783 * 113.61515 * 166.04544 * 3 2 1 28 28 H 1.09000 * 109.47715 * 55.29472 * 1 2 3 29 29 H 1.09003 * 109.47160 * 175.30068 * 1 2 3 30 30 H 1.09007 * 109.46844 * 295.29786 * 1 2 3 31 31 H 1.09001 * 109.46914 * 240.00033 * 2 1 3 32 32 H 1.09001 * 109.47676 * 120.00006 * 2 1 3 33 33 H 0.97006 * 119.99782 * 355.02965 * 6 4 3 34 34 H 1.09000 * 109.46813 * 60.00237 * 7 6 4 35 35 H 1.09002 * 109.47072 * 300.01006 * 7 6 4 36 36 H 1.09000 * 109.46946 * 60.00263 * 8 7 6 37 37 H 1.08999 * 109.47083 * 300.00213 * 8 7 6 38 38 H 1.09007 * 109.46970 * 60.00122 * 11 9 8 39 39 H 1.08998 * 109.47661 * 179.97438 * 11 9 8 40 40 H 1.08999 * 109.47140 * 300.00162 * 11 9 8 41 41 H 0.96993 * 120.00270 * 24.99879 * 12 9 8 42 42 H 1.09003 * 109.47064 * 299.71928 * 15 13 12 43 43 H 1.08996 * 109.47478 * 59.72239 * 15 13 12 44 44 H 0.96999 * 120.00312 * 179.97438 * 20 19 17 45 45 H 1.08991 * 113.61164 * 203.67657 * 25 3 2 46 46 H 1.09001 * 113.61102 * 334.58092 * 25 3 2 47 47 H 1.08997 * 113.61850 * 270.88492 * 26 25 3 48 48 H 1.09002 * 113.61279 * 139.97824 * 26 25 3 49 49 H 1.08990 * 113.61566 * 25.34861 * 27 3 2 50 50 H 1.09004 * 113.61505 * 156.25390 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6357 2.2061 -1.2347 5 8 0.8649 3.1383 -1.1459 6 7 2.1307 1.8532 -2.4375 7 6 1.6556 2.5234 -3.6505 8 6 2.3716 1.9391 -4.8698 9 6 1.8758 2.6394 -6.1366 10 1 0.7898 2.5633 -6.1925 11 6 2.4977 1.9722 -7.3649 12 7 2.2651 4.0512 -6.0982 13 6 1.5574 4.9645 -6.7923 14 8 0.5981 4.6177 -7.4482 15 6 1.9616 6.4159 -6.7577 16 16 0.8294 7.3821 -7.7877 17 6 1.5159 8.9904 -7.5712 18 1 2.3843 9.1269 -6.9438 19 6 0.9399 10.0821 -8.2060 20 7 1.4523 11.2836 -8.0439 21 14 -0.5627 9.8460 -9.2905 22 1 -1.7924 9.9888 -8.4705 23 1 -0.5630 10.8704 -10.3656 24 1 -0.5271 8.4913 -9.8976 25 6 1.7595 2.1971 1.3104 26 6 3.1106 1.6632 1.8149 27 6 3.5346 1.5674 0.3398 28 1 -0.3634 0.5851 -0.8448 29 1 -0.3633 -1.0242 -0.0842 30 1 -0.3633 0.4392 0.9292 31 1 1.8932 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 2.8017 1.1554 -2.5001 34 1 1.8660 3.5907 -3.5821 35 1 0.5812 2.3707 -3.7528 36 1 2.1608 0.8719 -4.9381 37 1 3.4461 2.0915 -4.7677 38 1 2.2080 0.9217 -7.3935 39 1 2.1441 2.4708 -8.2674 40 1 3.5836 2.0483 -7.3091 41 1 3.0321 4.3288 -5.5733 42 1 1.9197 6.7804 -5.7313 43 1 2.9775 6.5193 -7.1389 44 1 1.0500 12.0464 -8.4879 45 1 1.7342 3.2804 1.1934 46 1 0.9033 1.8097 1.8625 47 1 3.0396 0.6960 2.3125 48 1 3.6825 2.3937 2.3870 49 1 4.1112 0.6720 0.1085 50 1 3.9945 2.4788 -0.0424 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077893503.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:31:00 Heat of formation + Delta-G solvation = -79.992747 kcal Electronic energy + Delta-G solvation = -27343.602080 eV Core-core repulsion = 23496.779374 eV Total energy + Delta-G solvation = -3846.822706 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.176 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.07784 -39.59106 -38.26221 -36.60839 -34.68862 -32.87388 -32.41981 -31.89993 -29.65458 -28.59973 -26.82014 -26.01856 -25.59295 -23.90645 -23.06772 -21.67693 -21.20403 -20.42870 -18.97857 -17.84447 -17.40490 -16.70444 -16.46885 -16.05059 -15.92234 -15.55696 -15.04778 -14.93513 -14.88705 -14.42569 -14.23082 -13.98155 -13.64934 -13.43537 -13.32430 -13.10737 -12.99610 -12.79357 -12.77566 -12.26531 -12.15928 -12.05407 -11.90923 -11.81859 -11.71964 -11.57879 -11.40928 -11.24552 -11.14089 -10.98726 -10.80845 -10.65763 -10.57814 -9.84118 -9.81041 -9.49847 -9.35515 -9.02004 -8.96256 -8.48041 -6.89403 -6.26846 -3.98335 2.39093 2.77921 2.85236 2.98671 3.31515 3.36086 3.52161 3.66955 3.90488 4.01163 4.22883 4.34737 4.35112 4.41652 4.48067 4.65554 4.69384 4.78823 4.79805 4.89832 4.98889 5.12180 5.17819 5.21474 5.21945 5.27516 5.30984 5.34322 5.34998 5.40528 5.46049 5.52692 5.53634 5.59417 5.65820 5.74143 5.76345 5.78839 5.87433 5.92539 5.98039 6.03803 6.10293 6.14566 6.56888 7.19989 7.60895 7.96246 7.98217 8.43860 8.50418 9.19362 10.82414 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.014657 B = 0.002061 C = 0.001921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.834529 B =13579.496857 C =14572.290609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.093 4.093 3 C -0.107 4.107 4 C 0.527 3.473 5 O -0.532 6.532 6 N -0.731 5.731 7 C 0.116 3.884 8 C -0.137 4.137 9 C 0.147 3.853 10 H 0.091 0.909 11 C -0.163 4.163 12 N -0.734 5.734 13 C 0.533 3.467 14 O -0.518 6.518 15 C -0.125 4.125 16 S -0.142 6.142 17 C -0.521 4.521 18 H 0.088 0.912 19 C 0.095 3.905 20 N -0.881 5.881 21 Si 0.857 3.143 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.235 1.235 25 C -0.113 4.113 26 C -0.141 4.141 27 C -0.127 4.127 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.398 0.602 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.084 0.916 37 H 0.075 0.925 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.056 0.944 41 H 0.398 0.602 42 H 0.096 0.904 43 H 0.097 0.903 44 H 0.271 0.729 45 H 0.091 0.909 46 H 0.074 0.926 47 H 0.083 0.917 48 H 0.072 0.928 49 H 0.075 0.925 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.956 -28.278 17.292 33.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.130 4.130 3 C -0.110 4.110 4 C 0.313 3.687 5 O -0.407 6.407 6 N -0.383 5.383 7 C -0.008 4.008 8 C -0.175 4.175 9 C 0.041 3.959 10 H 0.109 0.891 11 C -0.221 4.221 12 N -0.388 5.388 13 C 0.319 3.681 14 O -0.393 6.393 15 C -0.276 4.276 16 S 0.085 5.915 17 C -0.668 4.668 18 H 0.106 0.894 19 C -0.114 4.114 20 N -0.517 5.517 21 Si 0.682 3.318 22 H -0.192 1.192 23 H -0.200 1.200 24 H -0.159 1.159 25 C -0.151 4.151 26 C -0.179 4.179 27 C -0.165 4.165 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.094 0.906 33 H 0.232 0.768 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.102 0.898 37 H 0.094 0.906 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.075 0.925 41 H 0.232 0.768 42 H 0.115 0.885 43 H 0.115 0.885 44 H 0.080 0.920 45 H 0.110 0.890 46 H 0.092 0.908 47 H 0.101 0.899 48 H 0.091 0.909 49 H 0.094 0.906 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 4.748 -27.979 16.200 32.678 hybrid contribution 1.272 0.471 0.441 1.426 sum 6.021 -27.509 16.641 32.709 Atomic orbital electron populations 1.21778 0.94999 1.01805 1.02645 1.21271 0.96621 0.92388 1.02763 1.22240 0.98202 0.96873 0.93734 1.20409 0.80267 0.83840 0.84157 1.90744 1.34995 1.28802 1.86173 1.46002 1.44583 1.41280 1.06398 1.21407 0.99071 0.97704 0.82584 1.22100 1.00999 1.00934 0.93480 1.20787 1.00975 0.80549 0.93554 0.89094 1.22171 1.00891 1.00441 0.98598 1.46088 1.33695 1.06940 1.52109 1.20268 0.82312 0.87238 0.78293 1.90693 1.27118 1.81082 1.40377 1.23288 1.04930 0.93764 1.05572 1.84773 1.40815 1.04177 1.61776 1.22318 1.18367 0.90355 1.35795 0.89403 1.24718 0.97029 0.94090 0.95521 1.69937 1.40527 0.98721 1.42539 0.86730 0.83253 0.80605 0.81232 1.19198 1.19964 1.15936 1.22853 0.97712 1.00900 0.93618 1.22835 0.97351 1.01717 0.95953 1.22972 0.93637 1.02770 0.97085 0.92567 0.92309 0.92193 0.91359 0.90621 0.76778 0.90899 0.91291 0.89756 0.90598 0.91842 0.91481 0.92463 0.76768 0.88526 0.88507 0.91958 0.89048 0.90755 0.89861 0.90939 0.90612 0.89614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.03 9.63 37.15 0.36 -0.67 16 2 C -0.09 -0.49 5.30 -26.73 -0.14 -0.63 16 3 C -0.11 -0.74 0.79 -154.84 -0.12 -0.86 16 4 C 0.53 5.32 5.75 -10.98 -0.06 5.26 16 5 O -0.53 -7.98 16.18 5.56 0.09 -7.89 16 6 N -0.73 -5.53 5.55 -60.30 -0.33 -5.86 16 7 C 0.12 1.04 5.57 -4.05 -0.02 1.02 16 8 C -0.14 -0.89 4.87 -26.73 -0.13 -1.02 16 9 C 0.15 1.47 2.57 -67.93 -0.17 1.29 16 10 H 0.09 1.11 7.58 -51.92 -0.39 0.72 16 11 C -0.16 -1.52 9.48 37.16 0.35 -1.17 16 12 N -0.73 -8.85 4.53 -53.80 -0.24 -9.09 16 13 C 0.53 9.33 7.81 -10.98 -0.09 9.24 16 14 O -0.52 -11.02 15.52 5.56 0.09 -10.94 16 15 C -0.12 -2.44 6.16 36.01 0.22 -2.22 16 16 S -0.14 -3.64 18.55 -107.50 -1.99 -5.63 16 17 C -0.52 -15.21 10.04 30.94 0.31 -14.90 16 18 H 0.09 2.67 8.03 -52.49 -0.42 2.25 16 19 C 0.09 2.82 5.50 -17.43 -0.10 2.72 16 20 N -0.88 -26.89 13.97 55.49 0.78 -26.11 16 21 Si 0.86 22.10 27.74 -169.99 -4.71 17.38 16 22 H -0.27 -6.83 7.11 56.52 0.40 -6.42 16 23 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.24 -6.05 6.74 56.52 0.38 -5.67 16 25 C -0.11 -0.85 6.75 -25.91 -0.17 -1.02 16 26 C -0.14 -0.74 7.73 -25.91 -0.20 -0.94 16 27 C -0.13 -0.67 7.22 -25.91 -0.19 -0.86 16 28 H 0.06 0.49 7.34 -51.93 -0.38 0.11 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.41 7.08 -51.93 -0.37 0.04 16 31 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.08 0.30 7.31 -51.93 -0.38 -0.07 16 33 H 0.40 1.81 8.48 -40.82 -0.35 1.46 16 34 H 0.07 0.81 7.75 -51.93 -0.40 0.40 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.40 3.79 8.60 -40.82 -0.35 3.44 16 42 H 0.10 1.79 8.14 -51.91 -0.42 1.37 16 43 H 0.10 1.75 8.14 -51.92 -0.42 1.33 16 44 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 45 H 0.09 0.87 7.73 -51.93 -0.40 0.47 16 46 H 0.07 0.53 7.01 -51.93 -0.36 0.16 16 47 H 0.08 0.34 7.60 -51.93 -0.39 -0.06 16 48 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 49 H 0.08 0.27 8.10 -51.93 -0.42 -0.15 16 50 H 0.09 0.52 8.09 -51.93 -0.42 0.10 16 LS Contribution 416.73 15.07 6.28 6.28 Total: -1.00 -36.66 416.73 -9.06 -45.72 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -8.85 Total: 0.88 kcal Atomic # 6 Polarization: -4.59 SS G_CDS: -0.16 Total: -4.74 kcal Atomic # 7 Polarization: -41.26 SS G_CDS: 0.20 Total: -41.06 kcal Atomic # 8 Polarization: -19.00 SS G_CDS: 0.18 Total: -18.83 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.71 Total: 17.38 kcal Atomic # 16 Polarization: -3.64 SS G_CDS: -1.99 Total: -5.63 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -36.66 -9.06 -45.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077893503.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.268 kcal (2) G-P(sol) polarization free energy of solvation -36.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds