Wall clock time and date at job start Wed Apr 1 2020 00:51:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50704 * 109.47238 * 2 1 4 4 C 1.31002 * 119.99598 * 126.32892 * 3 2 1 5 5 C 1.50697 * 120.00420 * 7.54616 * 4 3 2 6 6 C 1.52998 * 109.46949 * 127.61194 * 5 4 3 7 7 N 1.46903 * 109.46952 * 179.97438 * 6 5 4 8 8 C 1.46845 * 110.99579 * 65.79660 * 7 6 5 9 9 C 1.53035 * 109.52113 * 185.83939 * 8 7 6 10 10 C 1.53120 * 109.27827 * 300.81689 * 9 8 7 11 11 H 1.08997 * 109.52551 * 297.74788 * 10 9 8 12 12 N 1.46500 * 109.52157 * 177.62487 * 10 9 8 13 13 C 1.34775 * 120.00158 * 85.00261 * 12 10 9 14 14 O 1.21284 * 119.99911 * 0.02562 * 13 12 10 15 15 C 1.50700 * 120.00275 * 179.97438 * 13 12 10 16 16 S 1.81004 * 109.47378 * 179.97438 * 15 13 12 17 17 C 1.76198 * 99.99784 * 180.02562 * 16 15 13 18 18 H 1.08001 * 120.00158 * 0.02562 * 17 16 15 19 19 C 1.38805 * 119.99464 * 179.97438 * 17 16 15 20 20 N 1.31622 * 120.00063 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99616 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47023 * 60.00229 * 21 19 17 23 23 H 1.48498 * 109.47029 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47217 * 300.00270 * 21 19 17 25 25 C 1.53096 * 109.15500 * 57.65832 * 10 9 8 26 26 H 1.08997 * 109.49007 * 182.40397 * 25 10 9 27 27 O 1.42899 * 109.50514 * 62.28644 * 25 10 9 28 28 C 1.46852 * 110.99932 * 190.00177 * 7 6 5 29 29 H 1.09004 * 109.47147 * 60.00474 * 1 2 3 30 30 H 1.08999 * 109.47310 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47705 * 300.00196 * 1 2 3 32 32 H 1.08998 * 109.47255 * 240.00086 * 2 1 3 33 33 H 1.09008 * 109.46841 * 119.99928 * 2 1 3 34 34 H 1.07994 * 119.99714 * 306.33141 * 3 2 1 35 35 H 1.08004 * 119.99331 * 187.53857 * 4 3 2 36 36 H 1.09002 * 109.47001 * 7.61641 * 5 4 3 37 37 H 1.08996 * 109.46919 * 247.61766 * 5 4 3 38 38 H 1.09002 * 109.46904 * 60.00387 * 6 5 4 39 39 H 1.08996 * 109.47777 * 300.00046 * 6 5 4 40 40 H 1.08998 * 109.46399 * 305.85106 * 8 7 6 41 41 H 1.09003 * 109.46634 * 65.83465 * 8 7 6 42 42 H 1.08996 * 109.50848 * 60.75754 * 9 8 7 43 43 H 1.09005 * 109.50454 * 180.83960 * 9 8 7 44 44 H 0.97004 * 119.99854 * 264.99656 * 12 10 9 45 45 H 1.08997 * 109.47248 * 300.00749 * 15 13 12 46 46 H 1.09005 * 109.46525 * 59.99949 * 15 13 12 47 47 H 0.97002 * 119.99590 * 179.97438 * 20 19 17 48 48 H 0.96702 * 113.99478 * 180.18717 * 27 25 10 49 49 H 1.09000 * 109.46342 * 294.18006 * 28 7 6 50 50 H 1.08996 * 109.46046 * 54.16366 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.8843 1.8143 0.9140 5 6 3.4924 0.8105 1.8594 6 6 5.0160 0.9478 1.8381 7 7 5.6087 -0.0303 2.7601 8 6 5.3700 -1.4028 2.2959 9 6 5.8712 -2.3934 3.3492 10 6 7.3672 -2.1673 3.5845 11 1 7.9143 -2.3600 2.6617 12 7 7.8405 -3.0746 4.6328 13 6 8.2123 -4.3315 4.3189 14 8 8.1554 -4.7113 3.1685 15 6 8.6997 -5.2646 5.3972 16 16 9.1189 -6.8660 4.6651 17 6 9.6423 -7.7338 6.1065 18 1 9.6312 -7.2408 7.0674 19 6 10.0677 -9.0513 6.0072 20 7 10.0806 -9.6522 4.8362 21 14 10.6218 -9.9715 7.5355 22 1 9.5042 -10.0279 8.5117 23 1 11.0249 -11.3514 7.1635 24 1 11.7773 -9.2664 8.1461 25 6 7.5937 -0.7173 4.0203 26 1 8.6612 -0.5384 4.1481 27 8 6.9179 -0.4796 5.2568 28 6 7.0427 0.2250 2.9476 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8901 34 1 1.6899 2.1146 -0.7535 35 1 3.1511 2.8581 0.9900 36 1 3.2140 -0.1965 1.5484 37 1 3.1250 0.9935 2.8691 38 1 5.2944 1.9548 2.1491 39 1 5.3834 0.7648 0.8284 40 1 4.3021 -1.5517 2.1364 41 1 5.9034 -1.5676 1.3597 42 1 5.3287 -2.2385 4.2818 43 1 5.7074 -3.4122 2.9978 44 1 7.8865 -2.7707 5.5528 45 1 9.5834 -4.8398 5.8732 46 1 7.9155 -5.4002 6.1421 47 1 10.3782 -10.5728 4.7668 48 1 7.0162 0.4222 5.5917 49 1 7.5681 0.0527 2.0082 50 1 7.1896 1.2583 3.2617 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099693207.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:51:26 Heat of formation + Delta-G solvation = -75.162239 kcal Electronic energy + Delta-G solvation = -27287.452708 eV Core-core repulsion = 23440.839468 eV Total energy + Delta-G solvation = -3846.613240 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.176 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.22975 -38.69047 -37.40191 -36.00309 -34.54869 -32.66288 -32.40341 -31.26575 -30.23109 -29.20466 -27.75976 -25.47192 -24.36843 -23.72077 -23.35857 -21.87041 -20.23238 -20.08978 -18.68926 -17.81982 -17.18860 -16.78987 -16.30123 -16.19741 -15.64058 -15.30498 -14.94699 -14.89165 -14.78076 -14.54649 -14.17290 -14.10466 -13.88313 -13.41694 -13.36557 -13.06713 -12.91415 -12.58596 -12.49991 -12.35556 -12.23079 -12.07116 -11.92916 -11.56254 -11.40980 -11.26609 -11.15465 -11.01860 -11.01632 -10.78058 -10.69512 -10.52960 -10.11947 -9.79309 -9.34197 -9.29057 -9.03759 -8.79407 -8.57678 -8.20894 -6.46934 -6.19105 -3.89303 1.84747 3.05976 3.13801 3.25469 3.29244 3.33026 3.48766 3.74876 4.10421 4.23240 4.33851 4.44238 4.58959 4.68434 4.70002 4.83428 4.87908 4.90016 4.99151 5.07090 5.13918 5.15929 5.17631 5.22788 5.25530 5.28190 5.31931 5.38924 5.45889 5.53827 5.56118 5.67693 5.74959 5.75232 5.79047 5.80262 5.85244 5.94530 5.97782 6.19454 6.31699 6.32793 6.50016 6.71427 6.76583 6.79567 7.46697 7.61970 7.82890 8.37732 8.67717 9.26115 10.88268 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.018748 B = 0.001843 C = 0.001733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.122224 B =15190.492741 C =16154.641200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.109 4.109 3 C -0.159 4.159 4 C -0.158 4.158 5 C -0.098 4.098 6 C 0.062 3.938 7 N -0.528 5.528 8 C 0.057 3.943 9 C -0.124 4.124 10 C 0.157 3.843 11 H 0.093 0.907 12 N -0.728 5.728 13 C 0.532 3.468 14 O -0.521 6.521 15 C -0.153 4.153 16 S -0.060 6.060 17 C -0.536 4.536 18 H 0.072 0.928 19 C 0.073 3.927 20 N -0.868 5.868 21 Si 0.919 3.081 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.274 1.274 25 C 0.104 3.896 26 H 0.065 0.935 27 O -0.547 6.547 28 C 0.026 3.974 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.107 0.893 35 H 0.108 0.892 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.072 0.928 39 H 0.033 0.967 40 H 0.080 0.920 41 H 0.035 0.965 42 H 0.081 0.919 43 H 0.075 0.925 44 H 0.404 0.596 45 H 0.089 0.911 46 H 0.090 0.910 47 H 0.269 0.731 48 H 0.376 0.624 49 H 0.044 0.956 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.193 27.193 -5.639 30.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.146 4.146 3 C -0.177 4.177 4 C -0.177 4.177 5 C -0.135 4.135 6 C -0.066 4.066 7 N -0.252 5.252 8 C -0.071 4.071 9 C -0.163 4.163 10 C 0.051 3.949 11 H 0.110 0.890 12 N -0.382 5.382 13 C 0.318 3.682 14 O -0.396 6.396 15 C -0.304 4.304 16 S 0.166 5.834 17 C -0.684 4.684 18 H 0.090 0.910 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.200 1.200 25 C 0.044 3.956 26 H 0.083 0.917 27 O -0.352 6.352 28 C -0.103 4.103 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.125 0.875 35 H 0.126 0.874 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.091 0.909 39 H 0.051 0.949 40 H 0.098 0.902 41 H 0.053 0.947 42 H 0.100 0.900 43 H 0.093 0.907 44 H 0.238 0.762 45 H 0.107 0.893 46 H 0.108 0.892 47 H 0.078 0.922 48 H 0.223 0.777 49 H 0.062 0.938 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -13.625 25.792 -7.286 30.066 hybrid contribution 1.018 0.673 1.909 2.266 sum -12.607 26.465 -5.376 29.803 Atomic orbital electron populations 1.21688 0.95078 1.01777 1.01809 1.20843 0.96181 0.94694 1.02889 1.22823 0.98720 0.97595 0.98524 1.22756 0.98513 0.99215 0.97206 1.20868 0.94185 0.98856 0.99626 1.22013 0.94435 0.95990 0.94151 1.61890 1.12666 1.02914 1.47753 1.22132 1.01305 0.87485 0.96226 1.21926 0.95396 0.98898 1.00121 1.20909 0.95491 0.86433 0.92044 0.88952 1.45954 1.68186 1.12592 1.11435 1.20335 0.76232 0.81572 0.90022 1.90689 1.52811 1.75172 1.20925 1.23529 1.03799 1.02360 1.00662 1.85359 1.84429 1.00456 1.13133 1.22839 1.50770 1.00131 0.94647 0.90978 1.24988 0.95096 0.96473 0.97019 1.70009 1.44403 1.12725 1.23207 0.86227 0.79074 0.78464 0.81749 1.19937 1.20831 1.19959 1.22065 0.94854 0.94194 0.84488 0.91736 1.86527 1.76313 1.34983 1.37376 1.22770 0.88838 0.99898 0.98748 0.92825 0.92459 0.92666 0.91328 0.90453 0.87480 0.87419 0.90332 0.90285 0.90903 0.94855 0.90216 0.94725 0.90001 0.90677 0.76158 0.89296 0.89202 0.92165 0.77718 0.93773 0.90119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.89 37.16 0.37 -0.51 16 2 C -0.11 -0.72 6.04 -27.88 -0.17 -0.89 16 3 C -0.16 -1.05 9.51 -36.02 -0.34 -1.39 16 4 C -0.16 -1.05 9.51 -36.03 -0.34 -1.39 16 5 C -0.10 -0.70 5.23 -27.89 -0.15 -0.85 16 6 C 0.06 0.45 4.94 -3.82 -0.02 0.43 16 7 N -0.53 -4.55 4.54 -234.67 -1.07 -5.62 16 8 C 0.06 0.57 5.29 -3.84 -0.02 0.55 16 9 C -0.12 -1.53 5.51 -26.65 -0.15 -1.68 16 10 C 0.16 1.95 2.30 -67.82 -0.16 1.79 16 11 H 0.09 1.30 7.58 -51.93 -0.39 0.90 16 12 N -0.73 -10.39 5.05 -53.70 -0.27 -10.66 16 13 C 0.53 10.15 7.81 -10.99 -0.09 10.07 16 14 O -0.52 -11.87 15.53 5.55 0.09 -11.78 16 15 C -0.15 -3.16 6.16 36.01 0.22 -2.94 16 16 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 17 C -0.54 -15.43 9.50 30.94 0.29 -15.14 16 18 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 19 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 20 N -0.87 -26.37 13.22 55.49 0.73 -25.64 16 21 Si 0.92 21.59 29.55 -169.99 -5.02 16.57 16 22 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 25 C 0.10 0.94 3.42 -26.66 -0.09 0.84 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 27 O -0.55 -4.81 12.06 -35.23 -0.42 -5.24 16 28 C 0.03 0.20 5.12 -3.83 -0.02 0.19 16 29 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.08 0.54 5.28 -51.92 -0.27 0.26 16 34 H 0.11 0.62 8.06 -52.49 -0.42 0.20 16 35 H 0.11 0.61 8.06 -52.48 -0.42 0.19 16 36 H 0.08 0.59 3.59 -51.93 -0.19 0.41 16 37 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.47 7.99 -51.93 -0.41 0.05 16 39 H 0.03 0.26 8.12 -51.93 -0.42 -0.16 16 40 H 0.08 0.75 6.21 -51.93 -0.32 0.43 16 41 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.08 1.07 7.80 -51.93 -0.40 0.67 16 43 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.40 5.01 8.13 -40.82 -0.33 4.68 16 45 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 46 H 0.09 1.74 8.14 -51.91 -0.42 1.32 16 47 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 48 H 0.38 1.87 9.08 45.56 0.41 2.29 16 49 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 50 H 0.08 0.48 8.01 -51.93 -0.42 0.06 16 LS Contribution 411.17 15.07 6.20 6.20 Total: -1.00 -34.39 411.17 -10.52 -44.91 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -7.79 Total: 4.02 kcal Atomic # 6 Polarization: -8.14 SS G_CDS: -0.75 Total: -8.90 kcal Atomic # 7 Polarization: -41.31 SS G_CDS: -0.60 Total: -41.91 kcal Atomic # 8 Polarization: -16.68 SS G_CDS: -0.34 Total: -17.02 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -34.39 -10.52 -44.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099693207.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.251 kcal (2) G-P(sol) polarization free energy of solvation -34.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds