Wall clock time and date at job start Wed Apr 1 2020 00:51:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50702 * 109.47022 * 2 1 4 4 C 1.31003 * 120.00148 * 126.33325 * 3 2 1 5 5 C 1.50706 * 119.99795 * 7.54386 * 4 3 2 6 6 C 1.52994 * 109.47080 * 127.61712 * 5 4 3 7 7 N 1.46897 * 109.47108 * 179.97438 * 6 5 4 8 8 C 1.46843 * 111.00270 * 293.95312 * 7 6 5 9 9 C 1.53036 * 109.52253 * 185.83713 * 8 7 6 10 10 C 1.53116 * 109.28277 * 300.82276 * 9 8 7 11 11 H 1.09003 * 109.52093 * 297.69128 * 10 9 8 12 12 N 1.46493 * 109.52828 * 177.55813 * 10 9 8 13 13 C 1.34781 * 119.99666 * 85.27234 * 12 10 9 14 14 O 1.21277 * 120.00028 * 359.72865 * 13 12 10 15 15 C 1.50704 * 120.00010 * 179.72734 * 13 12 10 16 16 S 1.80993 * 109.47180 * 180.02562 * 15 13 12 17 17 C 1.76207 * 99.99915 * 180.02562 * 16 15 13 18 18 H 1.07994 * 119.99714 * 0.02562 * 17 16 15 19 19 C 1.38800 * 119.99626 * 180.02562 * 17 16 15 20 20 N 1.31622 * 120.00331 * 359.97438 * 19 17 16 21 21 Si 1.86808 * 119.99490 * 180.02562 * 19 17 16 22 22 H 1.48490 * 109.47084 * 89.99664 * 21 19 17 23 23 H 1.48503 * 109.46588 * 209.99686 * 21 19 17 24 24 H 1.48499 * 109.46974 * 329.99814 * 21 19 17 25 25 C 1.53122 * 109.15921 * 57.65472 * 10 9 8 26 26 H 1.08993 * 109.50364 * 62.28732 * 25 10 9 27 27 O 1.42896 * 109.50349 * 182.40908 * 25 10 9 28 28 C 1.46849 * 110.99606 * 58.16811 * 7 6 5 29 29 H 1.08998 * 109.47354 * 60.00129 * 1 2 3 30 30 H 1.09003 * 109.46716 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46935 * 299.99861 * 1 2 3 32 32 H 1.08999 * 109.47351 * 240.00417 * 2 1 3 33 33 H 1.08998 * 109.47354 * 119.99871 * 2 1 3 34 34 H 1.08005 * 120.00026 * 306.33674 * 3 2 1 35 35 H 1.07996 * 120.00165 * 187.54722 * 4 3 2 36 36 H 1.09002 * 109.47109 * 7.61717 * 5 4 3 37 37 H 1.09003 * 109.47065 * 247.62017 * 5 4 3 38 38 H 1.09002 * 109.47145 * 60.00027 * 6 5 4 39 39 H 1.08996 * 109.47152 * 300.00358 * 6 5 4 40 40 H 1.08998 * 109.46008 * 65.82457 * 8 7 6 41 41 H 1.09002 * 109.45459 * 305.85401 * 8 7 6 42 42 H 1.09006 * 109.50294 * 180.87914 * 9 8 7 43 43 H 1.08997 * 109.50185 * 60.76489 * 9 8 7 44 44 H 0.96994 * 120.00498 * 265.00565 * 12 10 9 45 45 H 1.08998 * 109.47280 * 300.00663 * 15 13 12 46 46 H 1.09007 * 109.47070 * 60.00190 * 15 13 12 47 47 H 0.97006 * 119.99913 * 180.02562 * 20 19 17 48 48 H 0.96705 * 113.99980 * 180.02562 * 27 25 10 49 49 H 1.09002 * 109.46056 * 294.17273 * 28 7 6 50 50 H 1.08994 * 109.46513 * 54.15523 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.8844 1.8144 0.9139 5 6 3.4925 0.8105 1.8593 6 6 5.0161 0.9479 1.8381 7 7 5.6089 -0.0301 2.7600 8 6 5.2501 0.2733 4.1512 9 6 5.9994 -0.6741 5.0908 10 6 5.6281 -2.1204 4.7522 11 1 4.5607 -2.2700 4.9146 12 7 6.3867 -3.0343 5.6098 13 6 5.9252 -3.3457 6.8373 14 8 4.8845 -2.8654 7.2337 15 6 6.7023 -4.2907 7.7171 16 16 5.8303 -4.5070 9.2883 17 6 6.9281 -5.6238 10.0962 18 1 7.8249 -5.9566 9.5951 19 6 6.6400 -6.0755 11.3767 20 7 5.5471 -5.6694 11.9876 21 14 7.8041 -7.2589 12.2334 22 1 8.8160 -6.4893 13.0008 23 1 7.0341 -8.1263 13.1607 24 1 8.4876 -8.1018 11.2197 25 6 5.9673 -2.3959 3.2847 26 1 7.0407 -2.2844 3.1321 27 8 5.5720 -3.7265 2.9453 28 6 5.2188 -1.3986 2.3973 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.6898 2.1147 -0.7535 35 1 3.1510 2.8581 0.9900 36 1 3.2141 -0.1964 1.5483 37 1 3.1252 0.9935 2.8691 38 1 5.2945 1.9549 2.1490 39 1 5.3834 0.7650 0.8283 40 1 4.1762 0.1440 4.2857 41 1 5.5234 1.3034 4.3802 42 1 5.7210 -0.4589 6.1225 43 1 7.0734 -0.5355 4.9667 44 1 7.2190 -3.4184 5.2928 45 1 6.7977 -5.2555 7.2191 46 1 7.6941 -3.8793 7.9052 47 1 5.3460 -5.9849 12.8826 48 1 5.7577 -3.9702 2.0281 49 1 4.1450 -1.5201 2.5401 50 1 5.4694 -1.5830 1.3527 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099693208.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:51:30 Heat of formation + Delta-G solvation = -75.741619 kcal Electronic energy + Delta-G solvation = -27453.993306 eV Core-core repulsion = 23607.354943 eV Total energy + Delta-G solvation = -3846.638364 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.176 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.32876 -38.78585 -37.42155 -36.28429 -34.70237 -32.66187 -32.39621 -31.23062 -30.03670 -29.16569 -27.69113 -25.47801 -24.71670 -23.72419 -23.34674 -22.06856 -20.33625 -20.01810 -18.70749 -17.81197 -17.59569 -16.72686 -16.31055 -16.21927 -15.70966 -15.48340 -14.92156 -14.78974 -14.77543 -14.45916 -14.26928 -14.00248 -13.80881 -13.58957 -13.35753 -13.06389 -12.89368 -12.75770 -12.54849 -12.49016 -12.30518 -12.27662 -11.89731 -11.59399 -11.41784 -11.32207 -11.20435 -11.03712 -10.99107 -10.76458 -10.69014 -10.59832 -10.32491 -9.77640 -9.46541 -9.30802 -9.03879 -8.81700 -8.59561 -8.19244 -6.45770 -6.18508 -3.88465 1.81241 3.06682 3.17082 3.24596 3.30036 3.34488 3.41370 3.74105 3.96102 4.23715 4.30663 4.41905 4.60225 4.64071 4.65421 4.74076 4.82774 4.89482 4.92026 4.97068 5.01059 5.11124 5.16583 5.17307 5.23327 5.27181 5.34751 5.40642 5.44125 5.45861 5.54326 5.62667 5.65621 5.69651 5.73105 5.76499 5.81275 5.95489 5.96046 6.14153 6.20564 6.26439 6.45259 6.63553 6.66262 6.72106 7.38228 7.62844 7.79988 8.38567 8.69537 9.26809 10.88916 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.021686 B = 0.001853 C = 0.001821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.824183 B =15106.283167 C =15375.687154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.107 4.107 3 C -0.160 4.160 4 C -0.154 4.154 5 C -0.144 4.144 6 C 0.063 3.937 7 N -0.532 5.532 8 C 0.053 3.947 9 C -0.127 4.127 10 C 0.157 3.843 11 H 0.090 0.910 12 N -0.727 5.727 13 C 0.535 3.465 14 O -0.520 6.520 15 C -0.153 4.153 16 S -0.061 6.061 17 C -0.535 4.535 18 H 0.072 0.928 19 C 0.073 3.927 20 N -0.868 5.868 21 Si 0.919 3.081 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.272 1.272 25 C 0.101 3.899 26 H 0.069 0.931 27 O -0.555 6.555 28 C 0.025 3.975 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.108 0.892 35 H 0.110 0.890 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.042 0.958 41 H 0.082 0.918 42 H 0.085 0.915 43 H 0.075 0.925 44 H 0.398 0.602 45 H 0.089 0.911 46 H 0.089 0.911 47 H 0.268 0.732 48 H 0.377 0.623 49 H 0.049 0.951 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.417 13.958 -27.764 31.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.144 4.144 3 C -0.178 4.178 4 C -0.173 4.173 5 C -0.182 4.182 6 C -0.065 4.065 7 N -0.256 5.256 8 C -0.076 4.076 9 C -0.166 4.166 10 C 0.051 3.949 11 H 0.108 0.892 12 N -0.379 5.379 13 C 0.321 3.679 14 O -0.394 6.394 15 C -0.303 4.303 16 S 0.166 5.834 17 C -0.683 4.683 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.203 1.203 23 H -0.208 1.208 24 H -0.197 1.197 25 C 0.041 3.959 26 H 0.087 0.913 27 O -0.360 6.360 28 C -0.104 4.104 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.126 0.874 35 H 0.128 0.872 36 H 0.098 0.902 37 H 0.091 0.909 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.060 0.940 41 H 0.100 0.900 42 H 0.103 0.897 43 H 0.094 0.906 44 H 0.232 0.768 45 H 0.108 0.892 46 H 0.107 0.893 47 H 0.078 0.922 48 H 0.223 0.777 49 H 0.067 0.933 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.941 14.740 -26.321 30.311 hybrid contribution 1.592 -1.395 -0.674 2.222 sum -1.348 13.345 -26.995 30.144 Atomic orbital electron populations 1.21694 0.95014 1.01818 1.01909 1.20821 0.96263 0.94702 1.02620 1.22826 0.98586 0.97591 0.98808 1.22692 0.98427 0.99121 0.97047 1.21615 0.97358 0.99489 0.99749 1.22156 0.91016 0.96327 0.97005 1.62173 1.58677 1.01776 1.02974 1.22156 0.98319 0.99915 0.87163 1.21997 1.01442 0.93071 1.00055 1.20853 0.98162 0.88992 0.86897 0.89228 1.45885 1.26841 1.49041 1.16166 1.20280 0.85481 0.81061 0.81070 1.90685 1.23301 1.52763 1.72699 1.23525 1.03435 1.00520 1.02843 1.85372 1.31788 1.60591 1.05646 1.22877 1.10271 1.31689 1.03455 0.90943 1.24990 0.95782 0.96546 0.96291 1.70020 1.23920 1.42621 1.13771 0.86170 0.80085 0.80121 0.79138 1.20292 1.20770 1.19708 1.22046 0.98122 0.81881 0.93840 0.91324 1.86664 1.86299 1.29482 1.33519 1.22795 0.99001 0.88952 0.99637 0.92745 0.92449 0.92619 0.91395 0.90719 0.87404 0.87246 0.90161 0.90868 0.90332 0.90498 0.93962 0.89995 0.89685 0.90621 0.76805 0.89237 0.89290 0.92227 0.77653 0.93322 0.90243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.89 37.16 0.37 -0.53 16 2 C -0.11 -0.68 6.04 -27.88 -0.17 -0.85 16 3 C -0.16 -1.03 9.51 -36.03 -0.34 -1.37 16 4 C -0.15 -0.99 9.51 -36.02 -0.34 -1.34 16 5 C -0.14 -0.98 4.60 -27.88 -0.13 -1.10 16 6 C 0.06 0.41 5.34 -3.83 -0.02 0.39 16 7 N -0.53 -4.24 4.86 -234.68 -1.14 -5.38 16 8 C 0.05 0.48 5.05 -3.84 -0.02 0.46 16 9 C -0.13 -1.42 5.67 -26.65 -0.15 -1.57 16 10 C 0.16 1.97 2.20 -67.81 -0.15 1.83 16 11 H 0.09 1.39 7.58 -51.93 -0.39 1.00 16 12 N -0.73 -10.41 4.99 -53.69 -0.27 -10.67 16 13 C 0.53 10.35 7.82 -10.98 -0.09 10.27 16 14 O -0.52 -12.05 15.53 5.56 0.09 -11.96 16 15 C -0.15 -3.18 6.16 36.01 0.22 -2.96 16 16 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 17 C -0.53 -15.47 9.50 30.94 0.29 -15.17 16 18 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 19 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 20 N -0.87 -26.47 13.22 55.49 0.73 -25.73 16 21 Si 0.92 21.66 29.55 -169.99 -5.02 16.64 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 25 C 0.10 0.95 3.14 -26.64 -0.08 0.87 16 26 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 27 O -0.56 -5.53 13.23 -35.23 -0.47 -6.00 16 28 C 0.03 0.20 4.46 -3.83 -0.02 0.18 16 29 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.52 5.28 -51.93 -0.27 0.24 16 34 H 0.11 0.60 8.06 -52.48 -0.42 0.18 16 35 H 0.11 0.62 8.06 -52.49 -0.42 0.19 16 36 H 0.08 0.57 3.67 -51.93 -0.19 0.38 16 37 H 0.07 0.57 6.68 -51.93 -0.35 0.22 16 38 H 0.08 0.48 8.06 -51.93 -0.42 0.07 16 39 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.04 0.41 6.75 -51.93 -0.35 0.06 16 41 H 0.08 0.67 8.06 -51.93 -0.42 0.25 16 42 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 43 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 44 H 0.40 4.70 8.60 -40.82 -0.35 4.35 16 45 H 0.09 1.76 8.14 -51.92 -0.42 1.33 16 46 H 0.09 1.70 8.14 -51.91 -0.42 1.28 16 47 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 48 H 0.38 1.97 9.08 45.56 0.41 2.38 16 49 H 0.05 0.43 6.61 -51.93 -0.34 0.09 16 50 H 0.08 0.50 8.12 -51.93 -0.42 0.07 16 LS Contribution 409.81 15.07 6.18 6.18 Total: -1.00 -35.21 409.81 -10.55 -45.75 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -7.71 Total: 3.95 kcal Atomic # 6 Polarization: -8.16 SS G_CDS: -0.72 Total: -8.88 kcal Atomic # 7 Polarization: -41.11 SS G_CDS: -0.67 Total: -41.79 kcal Atomic # 8 Polarization: -17.58 SS G_CDS: -0.38 Total: -17.96 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -35.21 -10.55 -45.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099693208.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.988 kcal (2) G-P(sol) polarization free energy of solvation -35.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds