Wall clock time and date at job start Wed Apr 1 2020 00:51:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50695 * 109.47446 * 2 1 4 4 C 1.31000 * 120.00225 * 124.99634 * 3 2 1 5 5 C 1.50698 * 119.99771 * 180.02562 * 4 3 2 6 6 C 1.53006 * 109.47184 * 125.00213 * 5 4 3 7 7 N 1.46898 * 109.47006 * 179.97438 * 6 5 4 8 8 C 1.46855 * 110.99918 * 66.04727 * 7 6 5 9 9 C 1.53042 * 109.52006 * 185.83700 * 8 7 6 10 10 C 1.53119 * 109.27954 * 300.81880 * 9 8 7 11 11 H 1.09000 * 109.52261 * 297.68897 * 10 9 8 12 12 N 1.46499 * 109.52001 * 177.56462 * 10 9 8 13 13 C 1.34765 * 120.00454 * 85.00002 * 12 10 9 14 14 O 1.21286 * 120.00118 * 359.97438 * 13 12 10 15 15 C 1.50698 * 120.00390 * 179.97438 * 13 12 10 16 16 S 1.80995 * 109.47506 * 180.02562 * 15 13 12 17 17 C 1.76206 * 100.00210 * 179.97438 * 16 15 13 18 18 H 1.07992 * 119.99881 * 0.02562 * 17 16 15 19 19 C 1.38800 * 119.99980 * 179.97438 * 17 16 15 20 20 N 1.31635 * 119.99870 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 119.99875 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47110 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.47111 * 120.00373 * 21 19 17 24 24 H 1.48495 * 109.47235 * 240.00269 * 21 19 17 25 25 C 1.53119 * 109.15969 * 57.65400 * 10 9 8 26 26 H 1.09005 * 109.50141 * 62.32901 * 25 10 9 27 27 O 1.42897 * 109.49952 * 182.40453 * 25 10 9 28 28 C 1.46848 * 110.99868 * 190.25349 * 7 6 5 29 29 H 1.08997 * 109.47116 * 300.00337 * 1 2 3 30 30 H 1.09001 * 109.46570 * 60.00040 * 1 2 3 31 31 H 1.09000 * 109.47314 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47116 * 239.99663 * 2 1 3 33 33 H 1.09001 * 109.46570 * 119.99960 * 2 1 3 34 34 H 1.08001 * 119.99858 * 305.00180 * 3 2 1 35 35 H 1.07992 * 120.00054 * 359.97438 * 4 3 2 36 36 H 1.09001 * 109.47612 * 5.00268 * 5 4 3 37 37 H 1.09001 * 109.47122 * 245.00099 * 5 4 3 38 38 H 1.09001 * 109.47002 * 299.99404 * 6 5 4 39 39 H 1.08993 * 109.46955 * 59.99842 * 6 5 4 40 40 H 1.08994 * 109.45928 * 305.84999 * 8 7 6 41 41 H 1.08994 * 109.46486 * 65.82040 * 8 7 6 42 42 H 1.09004 * 109.50390 * 60.76299 * 9 8 7 43 43 H 1.08996 * 109.50021 * 180.87587 * 9 8 7 44 44 H 0.97009 * 119.99230 * 264.99252 * 12 10 9 45 45 H 1.09003 * 109.47453 * 300.00139 * 15 13 12 46 46 H 1.09004 * 109.47198 * 59.99576 * 15 13 12 47 47 H 0.96998 * 119.99378 * 180.02562 * 20 19 17 48 48 H 0.96699 * 113.99939 * 180.02562 * 27 25 10 49 49 H 1.08997 * 109.46076 * 294.17770 * 28 7 6 50 50 H 1.08998 * 109.46082 * 54.14339 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.8642 1.8214 0.9293 5 6 3.3661 3.2423 0.9296 6 6 3.0710 3.8873 2.2853 7 7 3.5608 5.2722 2.2857 8 6 2.8057 6.0977 1.3343 9 6 3.4345 7.4907 1.2547 10 6 3.4160 8.1340 2.6441 11 1 2.3847 8.2555 2.9755 12 7 4.0690 9.4440 2.5858 13 6 3.3653 10.5320 2.2152 14 8 2.1913 10.4265 1.9295 15 6 4.0369 11.8797 2.1557 16 16 2.8376 13.1290 1.6297 17 6 3.8616 14.5628 1.6473 18 1 4.9006 14.4808 1.9299 19 6 3.3330 15.7974 1.2968 20 7 2.0665 15.8972 0.9518 21 14 4.4187 17.3173 1.3147 22 1 5.7920 16.9397 1.7348 23 1 4.4632 17.9100 -0.0462 24 1 3.8642 18.3106 2.2692 25 6 4.1673 7.2308 3.6261 26 1 5.2085 7.1425 3.3157 27 8 4.1065 7.7967 4.9368 28 6 3.5173 5.8453 3.6370 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.7066 2.1087 -0.7662 35 1 3.1896 1.1336 1.6957 36 1 2.8642 3.8052 0.1426 37 1 4.4414 3.2479 0.7510 38 1 1.9957 3.8818 2.4638 39 1 3.5729 3.3245 3.0723 40 1 2.8304 5.6313 0.3495 41 1 1.7721 6.1844 1.6692 42 1 4.4640 7.4060 0.9066 43 1 2.8646 8.1080 0.5602 44 1 5.0081 9.5283 2.8140 45 1 4.4210 12.1381 3.1426 46 1 4.8611 11.8438 1.4432 47 1 1.6973 16.7600 0.7066 48 1 4.5632 7.2759 5.6116 49 1 2.4804 5.9332 3.9611 50 1 4.0587 5.1956 4.3246 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099693209.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:51:34 Heat of formation + Delta-G solvation = -84.616952 kcal Electronic energy + Delta-G solvation = -26872.474339 eV Core-core repulsion = 23025.451112 eV Total energy + Delta-G solvation = -3847.023227 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.176 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.21084 -38.64757 -37.22418 -36.22296 -34.72549 -33.10954 -32.39641 -31.42694 -30.05547 -29.17760 -27.71329 -25.47404 -24.63261 -23.52411 -22.91790 -21.35688 -20.37792 -20.11609 -20.01375 -17.83477 -17.51536 -16.78857 -16.27684 -15.81755 -15.71304 -15.35601 -14.92793 -14.90668 -14.77688 -14.45063 -14.25865 -14.00601 -13.74698 -13.49143 -13.35208 -13.09347 -12.96432 -12.74253 -12.59264 -12.51118 -12.25916 -12.03650 -12.00997 -11.60815 -11.46734 -11.43064 -11.13315 -11.04715 -10.98614 -10.95754 -10.76414 -10.60673 -10.32917 -9.76675 -9.38286 -9.30207 -9.04620 -8.82018 -8.71396 -8.18743 -6.45733 -6.18735 -3.88562 1.82815 3.06711 3.16988 3.23761 3.30307 3.34840 3.37127 3.74156 3.95187 4.23571 4.29836 4.44658 4.57691 4.64119 4.67827 4.78852 4.85705 4.91138 4.93224 4.98496 5.01128 5.05500 5.13280 5.16524 5.25448 5.28835 5.34703 5.39647 5.42382 5.48445 5.53474 5.59570 5.63863 5.67598 5.70775 5.73057 5.78927 5.95485 5.95732 6.14416 6.20579 6.29345 6.44778 6.64165 6.66577 6.72091 7.38406 7.63161 7.79997 8.38775 8.69539 9.26795 10.88807 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.021589 B = 0.001686 C = 0.001607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.640687 B =16603.751039 C =17415.412632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.096 4.096 3 C -0.159 4.159 4 C -0.157 4.157 5 C -0.089 4.089 6 C 0.061 3.939 7 N -0.536 5.536 8 C 0.053 3.947 9 C -0.126 4.126 10 C 0.156 3.844 11 H 0.090 0.910 12 N -0.726 5.726 13 C 0.535 3.465 14 O -0.520 6.520 15 C -0.152 4.152 16 S -0.061 6.061 17 C -0.534 4.534 18 H 0.073 0.927 19 C 0.073 3.927 20 N -0.868 5.868 21 Si 0.919 3.081 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.280 1.280 25 C 0.102 3.898 26 H 0.069 0.931 27 O -0.556 6.556 28 C 0.029 3.971 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.108 0.892 35 H 0.107 0.893 36 H 0.068 0.932 37 H 0.081 0.919 38 H 0.036 0.964 39 H 0.075 0.925 40 H 0.084 0.916 41 H 0.039 0.961 42 H 0.075 0.925 43 H 0.085 0.915 44 H 0.398 0.602 45 H 0.089 0.911 46 H 0.089 0.911 47 H 0.267 0.733 48 H 0.377 0.623 49 H 0.045 0.955 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.870 -31.938 2.885 32.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.134 4.134 3 C -0.177 4.177 4 C -0.176 4.176 5 C -0.126 4.126 6 C -0.066 4.066 7 N -0.262 5.262 8 C -0.075 4.075 9 C -0.165 4.165 10 C 0.051 3.949 11 H 0.108 0.892 12 N -0.379 5.379 13 C 0.321 3.679 14 O -0.395 6.395 15 C -0.303 4.303 16 S 0.166 5.834 17 C -0.682 4.682 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.206 1.206 25 C 0.042 3.958 26 H 0.087 0.913 27 O -0.360 6.360 28 C -0.100 4.100 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.126 0.874 35 H 0.125 0.875 36 H 0.087 0.913 37 H 0.099 0.901 38 H 0.054 0.946 39 H 0.093 0.907 40 H 0.102 0.898 41 H 0.058 0.942 42 H 0.094 0.906 43 H 0.103 0.897 44 H 0.232 0.768 45 H 0.108 0.892 46 H 0.107 0.893 47 H 0.077 0.923 48 H 0.224 0.776 49 H 0.063 0.937 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.894 -31.505 1.905 31.695 hybrid contribution 1.984 0.663 1.032 2.333 sum 4.878 -30.842 2.936 31.363 Atomic orbital electron populations 1.21719 0.95126 1.01644 1.02143 1.20642 0.96198 0.94333 1.02187 1.22912 0.98248 0.97318 0.99192 1.22805 0.98716 0.96930 0.99150 1.20715 1.02167 0.92552 0.97185 1.22031 0.98184 0.88368 0.98040 1.61925 1.55597 1.02070 1.06587 1.22184 0.95237 0.93257 0.96863 1.21993 1.02613 0.94829 0.97074 1.20861 0.98258 0.82284 0.93541 0.89211 1.45884 1.14063 1.06742 1.71233 1.20281 0.86880 0.85161 0.75582 1.90688 1.15878 1.85776 1.47136 1.23524 1.05114 0.96463 1.05209 1.85377 1.12804 0.97602 1.87644 1.22920 0.98465 0.93764 1.53087 0.90892 1.24991 0.95411 0.98619 0.94586 1.70035 1.12312 1.25315 1.42684 0.86117 0.80019 0.81465 0.77898 1.19618 1.20596 1.20586 1.22032 0.99153 0.91062 0.83539 0.91267 1.86665 1.79560 1.52011 1.17740 1.22754 1.00616 0.95878 0.90788 0.92621 0.92547 0.92617 0.91211 0.91734 0.87382 0.87454 0.91322 0.90100 0.94556 0.90683 0.89803 0.94239 0.90603 0.89685 0.76800 0.89227 0.89284 0.92282 0.77627 0.93654 0.90197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 9.90 37.16 0.37 -0.40 16 2 C -0.10 -0.51 6.38 -27.88 -0.18 -0.69 16 3 C -0.16 -0.99 9.12 -36.03 -0.33 -1.32 16 4 C -0.16 -0.97 9.12 -36.03 -0.33 -1.30 16 5 C -0.09 -0.58 5.59 -27.88 -0.16 -0.73 16 6 C 0.06 0.43 4.94 -3.82 -0.02 0.41 16 7 N -0.54 -4.41 4.66 -234.67 -1.09 -5.51 16 8 C 0.05 0.50 5.29 -3.83 -0.02 0.48 16 9 C -0.13 -1.43 5.67 -26.65 -0.15 -1.58 16 10 C 0.16 2.00 2.20 -67.81 -0.15 1.85 16 11 H 0.09 1.42 7.58 -51.93 -0.39 1.02 16 12 N -0.73 -10.48 5.00 -53.69 -0.27 -10.75 16 13 C 0.53 10.40 7.81 -10.99 -0.09 10.32 16 14 O -0.52 -12.13 15.53 5.55 0.09 -12.04 16 15 C -0.15 -3.19 6.16 36.00 0.22 -2.96 16 16 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 17 C -0.53 -15.46 9.50 30.94 0.29 -15.17 16 18 H 0.07 2.01 7.80 -52.49 -0.41 1.60 16 19 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 20 N -0.87 -26.49 13.22 55.49 0.73 -25.75 16 21 Si 0.92 21.67 29.55 -169.99 -5.02 16.65 16 22 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 C 0.10 0.97 3.13 -26.65 -0.08 0.89 16 26 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 27 O -0.56 -5.60 13.23 -35.23 -0.47 -6.07 16 28 C 0.03 0.23 5.09 -3.83 -0.02 0.21 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.32 7.79 -51.93 -0.40 -0.09 16 34 H 0.11 0.68 7.84 -52.49 -0.41 0.27 16 35 H 0.11 0.59 7.84 -52.49 -0.41 0.18 16 36 H 0.07 0.47 6.09 -51.93 -0.32 0.16 16 37 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.04 0.28 8.12 -51.93 -0.42 -0.15 16 39 H 0.07 0.46 7.98 -51.93 -0.41 0.04 16 40 H 0.08 0.71 6.22 -51.93 -0.32 0.38 16 41 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 44 H 0.40 4.72 8.60 -40.82 -0.35 4.37 16 45 H 0.09 1.76 8.14 -51.91 -0.42 1.34 16 46 H 0.09 1.71 8.14 -51.91 -0.42 1.28 16 47 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 48 H 0.38 1.99 9.08 45.56 0.41 2.40 16 49 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 50 H 0.08 0.50 8.01 -51.93 -0.42 0.08 16 LS Contribution 417.46 15.07 6.29 6.29 Total: -1.00 -35.34 417.46 -10.75 -46.09 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -8.07 Total: 2.98 kcal Atomic # 6 Polarization: -7.26 SS G_CDS: -0.73 Total: -7.99 kcal Atomic # 7 Polarization: -41.38 SS G_CDS: -0.63 Total: -42.01 kcal Atomic # 8 Polarization: -17.73 SS G_CDS: -0.38 Total: -18.11 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -35.34 -10.75 -46.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099693209.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.531 kcal (2) G-P(sol) polarization free energy of solvation -35.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds