Wall clock time and date at job start Wed Apr 1 2020 00:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 C 1.30999 * 120.00002 * 125.00530 * 3 2 1 5 5 C 1.50703 * 120.00002 * 180.02562 * 4 3 2 6 6 C 1.52995 * 109.46907 * 124.99423 * 5 4 3 7 7 N 1.46906 * 109.46928 * 179.97438 * 6 5 4 8 8 C 1.46854 * 110.99522 * 66.05057 * 7 6 5 9 9 C 1.53035 * 109.52172 * 174.16055 * 8 7 6 10 10 C 1.53126 * 109.27947 * 59.17445 * 9 8 7 11 11 H 1.08997 * 109.52212 * 182.43708 * 10 9 8 12 12 N 1.46506 * 109.51701 * 62.31716 * 10 9 8 13 13 C 1.34771 * 119.99998 * 84.99863 * 12 10 9 14 14 O 1.21284 * 120.00137 * 0.02562 * 13 12 10 15 15 C 1.50702 * 119.99709 * 179.97438 * 13 12 10 16 16 S 1.81002 * 109.47028 * 180.02562 * 15 13 12 17 17 C 1.76197 * 100.00160 * 179.97438 * 16 15 13 18 18 H 1.08000 * 120.00019 * 0.02562 * 17 16 15 19 19 C 1.38800 * 120.00009 * 179.97438 * 17 16 15 20 20 N 1.31627 * 120.00079 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99976 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47148 * 60.00011 * 21 19 17 23 23 H 1.48493 * 109.47490 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47099 * 300.00726 * 21 19 17 25 25 C 1.53119 * 109.16248 * 302.34947 * 10 9 8 26 26 H 1.09000 * 109.50089 * 297.71022 * 25 10 9 27 27 O 1.42892 * 109.50141 * 177.63308 * 25 10 9 28 28 C 1.46836 * 111.00282 * 301.84103 * 7 6 5 29 29 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 31 31 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 32 32 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 33 33 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 34 34 H 1.07996 * 119.99901 * 304.99934 * 3 2 1 35 35 H 1.07996 * 120.00097 * 359.97438 * 4 3 2 36 36 H 1.08997 * 109.47209 * 244.99700 * 5 4 3 37 37 H 1.09002 * 109.46637 * 4.99745 * 5 4 3 38 38 H 1.09003 * 109.47796 * 299.99938 * 6 5 4 39 39 H 1.09002 * 109.47209 * 60.00672 * 6 5 4 40 40 H 1.08995 * 109.46104 * 294.17649 * 8 7 6 41 41 H 1.08999 * 109.46251 * 54.15768 * 8 7 6 42 42 H 1.09003 * 109.50729 * 179.12081 * 9 8 7 43 43 H 1.09006 * 109.50370 * 299.20132 * 9 8 7 44 44 H 0.96993 * 119.99560 * 264.99513 * 12 10 9 45 45 H 1.09000 * 109.47292 * 299.99891 * 15 13 12 46 46 H 1.09001 * 109.47226 * 60.00576 * 15 13 12 47 47 H 0.96995 * 119.99830 * 179.97438 * 20 19 17 48 48 H 0.96700 * 114.00269 * 179.97438 * 27 25 10 49 49 H 1.09004 * 109.46383 * 305.85104 * 28 7 6 50 50 H 1.08999 * 109.46692 * 65.82195 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.8642 1.8215 0.9293 5 6 3.3660 3.2425 0.9296 6 6 3.0708 3.8872 2.2853 7 7 3.5606 5.2723 2.2858 8 6 2.8054 6.0978 1.3345 9 6 3.2419 7.5586 1.4662 10 6 4.7432 7.6651 1.1838 11 1 5.0669 8.6971 1.3188 12 7 5.0133 7.2434 -0.1930 13 6 4.8922 8.1261 -1.2042 14 8 4.5601 9.2698 -0.9744 15 6 5.1706 7.6925 -2.6204 16 16 4.9238 9.0932 -3.7399 17 6 5.3065 8.3258 -5.2791 18 1 5.5888 7.2837 -5.3076 19 6 5.2443 9.0603 -6.4552 20 7 4.8998 10.3303 -6.4206 21 14 5.6493 8.2466 -8.0871 22 1 4.7165 7.1150 -8.3210 23 1 5.5095 9.2387 -9.1831 24 1 7.0445 7.7391 -8.0544 25 6 5.5031 6.7589 2.1563 26 1 5.3328 7.0980 3.1782 27 8 6.9007 6.8104 1.8633 28 6 5.0009 5.3213 2.0046 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.7065 2.1087 -0.7661 35 1 3.1897 1.1337 1.6956 36 1 4.4412 3.2482 0.7510 37 1 2.8640 3.8052 0.1426 38 1 1.9956 3.8817 2.4640 39 1 3.5729 3.3245 3.0723 40 1 2.9988 5.7510 0.3195 41 1 1.7399 6.0165 1.5493 42 1 2.6925 8.1687 0.7492 43 1 3.0355 7.9104 2.4771 44 1 5.2793 6.3289 -0.3768 45 1 6.2003 7.3431 -2.6976 46 1 4.4914 6.8848 -2.8932 47 1 4.8567 10.8436 -7.2424 48 1 7.4446 6.2590 2.4422 49 1 5.5300 4.6759 2.7059 50 1 5.1841 4.9782 0.9864 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099693210.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:51:39 Heat of formation + Delta-G solvation = -80.908802 kcal Electronic energy + Delta-G solvation = -27849.992157 eV Core-core repulsion = 24003.129727 eV Total energy + Delta-G solvation = -3846.862430 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.176 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.51420 -38.58443 -37.20094 -36.15137 -34.70822 -32.78473 -32.40897 -31.36106 -30.02599 -29.00791 -27.75781 -25.49156 -25.12124 -23.40454 -22.91734 -21.72640 -20.78011 -20.00756 -19.01375 -17.89900 -17.59812 -16.61425 -16.03596 -15.82728 -15.76732 -15.46024 -15.11356 -14.86774 -14.78739 -14.36548 -14.19252 -14.08866 -13.68385 -13.53435 -13.33383 -13.16374 -12.77384 -12.66922 -12.63941 -12.53247 -12.22008 -12.10721 -11.89321 -11.69209 -11.39004 -11.29912 -11.10702 -11.08527 -11.02567 -11.02497 -10.76977 -10.57785 -10.24234 -9.79835 -9.46503 -9.32397 -9.04430 -8.84568 -8.50838 -8.21105 -6.47154 -6.19548 -3.89720 1.89595 3.06301 3.16310 3.24519 3.28537 3.32302 3.44555 3.77338 3.95940 4.22550 4.33800 4.44282 4.55696 4.61851 4.70578 4.81036 4.86116 4.95386 4.97596 4.99353 5.02869 5.05217 5.15342 5.15816 5.24992 5.31670 5.37615 5.42622 5.44737 5.55896 5.59569 5.62156 5.66734 5.68639 5.75841 5.79679 5.84943 5.92327 6.00759 6.04050 6.17363 6.34860 6.50638 6.65707 6.69006 6.73494 7.39009 7.61071 7.77147 8.36971 8.68432 9.25523 10.87842 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.008080 B = 0.002802 C = 0.002226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3464.662522 B = 9989.973057 C =12574.658867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.097 4.097 3 C -0.157 4.157 4 C -0.156 4.156 5 C -0.133 4.133 6 C 0.062 3.938 7 N -0.531 5.531 8 C 0.051 3.949 9 C -0.127 4.127 10 C 0.155 3.845 11 H 0.095 0.905 12 N -0.724 5.724 13 C 0.534 3.466 14 O -0.519 6.519 15 C -0.153 4.153 16 S -0.058 6.058 17 C -0.536 4.536 18 H 0.071 0.929 19 C 0.074 3.926 20 N -0.868 5.868 21 Si 0.918 3.082 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.274 1.274 25 C 0.101 3.899 26 H 0.076 0.924 27 O -0.555 6.555 28 C 0.020 3.980 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.043 0.957 41 H 0.078 0.922 42 H 0.085 0.915 43 H 0.080 0.920 44 H 0.394 0.606 45 H 0.088 0.912 46 H 0.086 0.914 47 H 0.269 0.731 48 H 0.377 0.623 49 H 0.078 0.922 50 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.887 -19.428 21.109 28.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.134 4.134 3 C -0.175 4.175 4 C -0.175 4.175 5 C -0.171 4.171 6 C -0.066 4.066 7 N -0.255 5.255 8 C -0.077 4.077 9 C -0.166 4.166 10 C 0.049 3.951 11 H 0.113 0.887 12 N -0.379 5.379 13 C 0.321 3.679 14 O -0.393 6.393 15 C -0.303 4.303 16 S 0.168 5.832 17 C -0.684 4.684 18 H 0.089 0.911 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.744 3.256 22 H -0.200 1.200 23 H -0.208 1.208 24 H -0.199 1.199 25 C 0.041 3.959 26 H 0.094 0.906 27 O -0.359 6.359 28 C -0.109 4.109 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.126 0.874 35 H 0.126 0.874 36 H 0.091 0.909 37 H 0.088 0.912 38 H 0.097 0.903 39 H 0.094 0.906 40 H 0.061 0.939 41 H 0.096 0.904 42 H 0.103 0.897 43 H 0.099 0.901 44 H 0.228 0.772 45 H 0.107 0.893 46 H 0.104 0.896 47 H 0.079 0.921 48 H 0.224 0.776 49 H 0.096 0.904 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.746 -16.697 21.402 27.556 hybrid contribution 1.123 -3.137 -1.829 3.801 sum -3.623 -19.834 19.573 28.100 Atomic orbital electron populations 1.21716 0.95112 1.01625 1.02146 1.20645 0.96227 0.94306 1.02194 1.22936 0.98315 0.97309 0.98945 1.22708 0.98949 0.96595 0.99240 1.21421 1.01679 0.94209 0.99814 1.22182 1.01210 0.87422 0.95797 1.62165 1.02601 1.09934 1.50771 1.22159 0.98118 0.93203 0.94212 1.21982 0.95315 0.96038 1.03233 1.20879 0.93664 0.99573 0.80976 0.88672 1.45941 1.71992 1.14101 1.05844 1.20257 0.76096 0.85214 0.86379 1.90691 1.45429 1.18712 1.84466 1.23522 1.04559 1.06804 0.95444 1.85373 1.89866 1.09995 0.97933 1.22829 1.53871 0.99233 0.92474 0.91064 1.24984 0.94729 0.94835 0.99015 1.70006 1.44678 1.07029 1.28589 0.86234 0.78996 0.78917 0.81405 1.19972 1.20803 1.19949 1.22056 0.81334 0.93837 0.98645 0.90586 1.86659 1.16793 1.71030 1.61449 1.22840 0.89562 0.97840 1.00617 0.92632 0.92636 0.92499 0.91755 0.91157 0.87381 0.87444 0.90874 0.91177 0.90346 0.90562 0.93913 0.90364 0.89677 0.90103 0.77152 0.89333 0.89560 0.92146 0.77646 0.90368 0.93599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.89 37.16 0.37 -0.54 16 2 C -0.10 -0.63 6.38 -27.88 -0.18 -0.81 16 3 C -0.16 -1.20 9.12 -36.02 -0.33 -1.53 16 4 C -0.16 -1.13 9.12 -36.02 -0.33 -1.46 16 5 C -0.13 -0.98 4.96 -27.88 -0.14 -1.12 16 6 C 0.06 0.43 5.34 -3.82 -0.02 0.41 16 7 N -0.53 -4.30 4.86 -234.67 -1.14 -5.44 16 8 C 0.05 0.48 4.90 -3.83 -0.02 0.46 16 9 C -0.13 -1.40 5.76 -26.65 -0.15 -1.55 16 10 C 0.15 1.92 2.51 -67.80 -0.17 1.75 16 11 H 0.10 1.43 7.58 -51.93 -0.39 1.04 16 12 N -0.72 -10.30 4.18 -53.68 -0.22 -10.52 16 13 C 0.53 10.29 7.81 -10.99 -0.09 10.21 16 14 O -0.52 -11.96 15.53 5.55 0.09 -11.87 16 15 C -0.15 -3.19 6.16 36.01 0.22 -2.97 16 16 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 17 C -0.54 -15.49 9.50 30.94 0.29 -15.19 16 18 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 19 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 20 N -0.87 -26.44 13.22 55.49 0.73 -25.71 16 21 Si 0.92 21.64 29.55 -169.99 -5.02 16.61 16 22 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 25 C 0.10 0.94 3.35 -26.65 -0.09 0.85 16 26 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 27 O -0.56 -5.49 13.15 -35.23 -0.46 -5.96 16 28 C 0.02 0.16 4.30 -3.84 -0.02 0.14 16 29 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.38 7.79 -51.93 -0.40 -0.02 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.11 0.89 7.84 -52.49 -0.41 0.48 16 35 H 0.11 0.68 7.84 -52.49 -0.41 0.27 16 36 H 0.07 0.56 6.50 -51.93 -0.34 0.22 16 37 H 0.07 0.61 6.33 -51.93 -0.33 0.28 16 38 H 0.08 0.55 8.06 -51.93 -0.42 0.14 16 39 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.04 0.45 6.30 -51.93 -0.33 0.12 16 41 H 0.08 0.70 8.06 -51.93 -0.42 0.28 16 42 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 44 H 0.39 4.85 7.02 -40.82 -0.29 4.56 16 45 H 0.09 1.75 8.14 -51.92 -0.42 1.33 16 46 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 47 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 48 H 0.38 1.95 9.08 45.56 0.41 2.37 16 49 H 0.08 0.49 8.12 -51.93 -0.42 0.07 16 50 H 0.05 0.39 5.11 -51.93 -0.27 0.13 16 LS Contribution 410.17 15.07 6.18 6.18 Total: -1.00 -34.79 410.17 -10.59 -45.38 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -7.78 Total: 4.46 kcal Atomic # 6 Polarization: -8.57 SS G_CDS: -0.74 Total: -9.31 kcal Atomic # 7 Polarization: -41.04 SS G_CDS: -0.63 Total: -41.67 kcal Atomic # 8 Polarization: -17.45 SS G_CDS: -0.38 Total: -17.83 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -34.79 -10.59 -45.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099693210.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.531 kcal (2) G-P(sol) polarization free energy of solvation -34.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds