Wall clock time and date at job start Wed Apr 1 2020 00:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46914 * 2 1 4 4 C 1.53000 * 109.47299 * 120.00066 * 2 1 3 5 5 C 1.53001 * 109.47154 * 64.99844 * 4 2 1 6 6 C 1.50698 * 109.47091 * 179.97438 * 5 4 2 7 7 O 1.21280 * 119.99893 * 0.02562 * 6 5 4 8 8 N 1.34778 * 119.99794 * 180.02562 * 6 5 4 9 9 C 1.46920 * 120.63229 * 0.02562 * 8 6 5 10 10 C 1.53196 * 108.77435 * 126.37018 * 9 8 6 11 11 C 1.53037 * 109.31040 * 54.63686 * 10 9 8 12 12 C 1.53040 * 109.54181 * 298.63376 * 11 10 9 13 13 H 1.09004 * 109.52641 * 301.40586 * 12 11 10 14 14 N 1.46498 * 109.50473 * 181.31814 * 12 11 10 15 15 C 1.34775 * 119.99775 * 85.15751 * 14 12 11 16 16 O 1.21281 * 120.00293 * 0.02562 * 15 14 12 17 17 C 1.50703 * 119.99582 * 180.02562 * 15 14 12 18 18 S 1.81004 * 109.46985 * 180.02562 * 17 15 14 19 19 C 1.76194 * 100.00145 * 179.97438 * 18 17 15 20 20 H 1.07996 * 120.00054 * 0.02562 * 19 18 17 21 21 C 1.38800 * 120.00234 * 179.97438 * 19 18 17 22 22 N 1.31628 * 120.00042 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 119.99592 * 0.02562 * 21 19 18 24 24 H 1.48505 * 109.46994 * 90.00489 * 23 21 19 25 25 H 1.48504 * 109.46923 * 209.99660 * 23 21 19 26 26 H 1.48490 * 109.47450 * 329.99849 * 23 21 19 27 27 C 1.46926 * 120.62819 * 179.97438 * 8 6 5 28 28 H 1.09000 * 109.47192 * 60.00002 * 1 2 3 29 29 H 1.09001 * 109.46700 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47207 * 300.00098 * 1 2 3 31 31 H 1.09000 * 109.47050 * 240.00299 * 2 1 3 32 32 H 1.08998 * 109.46946 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.47190 * 300.00000 * 3 2 1 34 34 H 1.09000 * 109.47018 * 60.00279 * 3 2 1 35 35 H 1.09002 * 109.46563 * 305.00329 * 4 2 1 36 36 H 1.09004 * 109.47245 * 185.00323 * 4 2 1 37 37 H 1.09001 * 109.46542 * 60.00120 * 5 4 2 38 38 H 1.08995 * 109.47186 * 300.00340 * 5 4 2 39 39 H 1.08998 * 109.58534 * 6.58582 * 9 8 6 40 40 H 1.08995 * 109.70522 * 246.22724 * 9 8 6 41 41 H 1.08999 * 109.50112 * 174.59220 * 10 9 8 42 42 H 1.09004 * 109.49641 * 294.68461 * 10 9 8 43 43 H 1.09000 * 109.46257 * 58.65576 * 11 10 9 44 44 H 1.09003 * 109.45936 * 178.62016 * 11 10 9 45 45 H 0.97003 * 119.99720 * 265.16840 * 14 12 11 46 46 H 1.09000 * 109.46925 * 300.00011 * 17 15 14 47 47 H 1.08995 * 109.47312 * 60.00504 * 17 15 14 48 48 H 0.96998 * 119.99638 * 179.97438 * 22 21 19 49 49 H 1.08998 * 109.58617 * 353.41260 * 27 8 6 50 50 H 1.08995 * 109.59240 * 113.84037 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6353 -2.1955 1.1880 6 6 2.1382 -2.9060 2.4181 7 8 2.7588 -2.2935 3.2610 8 7 1.8983 -4.2222 2.5815 9 6 1.1484 -4.9778 1.5689 10 6 1.9769 -6.1960 1.1490 11 6 2.3484 -7.0081 2.3919 12 6 3.1967 -6.1475 3.3310 13 1 4.0939 -5.8146 2.8092 14 7 3.5781 -6.9355 4.5056 15 6 4.6683 -7.7267 4.4612 16 8 5.3338 -7.7860 3.4491 17 6 5.0603 -8.5377 5.6694 18 16 6.5553 -9.4884 5.2987 19 6 6.7805 -10.3168 6.8374 20 1 6.0860 -10.1497 7.6473 21 6 7.8500 -11.1849 7.0082 22 7 8.0185 -11.8033 8.1578 23 14 9.0508 -11.4745 5.6069 24 1 10.1584 -10.4890 5.6926 25 1 9.6031 -12.8495 5.7045 26 1 8.3457 -11.3152 4.3098 27 6 2.3826 -4.9288 3.7751 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 3.1299 1.4425 0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6053 -0.2617 2.1369 36 1 3.1264 -0.6443 1.2952 37 1 2.0699 -2.6549 0.3002 38 1 0.5490 -2.2724 1.1420 39 1 0.9653 -4.3438 0.7013 40 1 0.1977 -5.3088 1.9867 41 1 1.3926 -6.8169 0.4700 42 1 2.8854 -5.8628 0.6472 43 1 1.4397 -7.3201 2.9068 44 1 2.9172 -7.8888 2.0936 45 1 3.0459 -6.8878 5.3152 46 1 5.2539 -7.8693 6.5084 47 1 4.2503 -9.2198 5.9276 48 1 8.7657 -12.4103 8.2770 49 1 3.0138 -4.2626 4.3631 50 1 1.5339 -5.2559 4.3757 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001293846549.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:58:19 Heat of formation + Delta-G solvation = -101.070683 kcal Electronic energy + Delta-G solvation = -27287.175724 eV Core-core repulsion = 23439.439010 eV Total energy + Delta-G solvation = -3847.736714 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.176 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.75241 -39.42398 -37.76003 -36.83208 -34.67566 -32.62980 -32.44202 -31.73048 -30.55190 -28.52335 -27.60696 -26.21396 -25.62114 -24.43518 -23.17656 -21.34164 -20.50199 -20.34745 -19.17348 -17.93778 -17.54116 -16.61139 -16.38465 -16.09122 -15.97491 -15.25633 -15.13237 -14.95774 -14.60683 -14.56862 -14.22249 -14.07953 -13.91858 -13.75817 -13.44200 -13.24628 -12.99775 -12.83675 -12.79501 -12.64977 -12.26927 -12.15293 -11.77185 -11.76667 -11.46496 -11.27374 -11.20881 -11.18237 -11.13251 -11.05254 -11.00851 -10.97174 -10.61844 -10.10480 -9.86209 -9.55330 -9.19658 -9.00653 -8.89773 -8.50994 -6.92454 -6.29266 -4.01102 2.28749 2.45353 2.81782 2.93760 3.31662 3.35158 3.49991 3.65164 4.04267 4.32519 4.33451 4.39621 4.43958 4.52425 4.53636 4.58389 4.67952 4.73574 4.79464 4.88879 4.95719 5.02815 5.09059 5.09954 5.18661 5.22506 5.28404 5.31160 5.35674 5.40674 5.41795 5.46283 5.58535 5.60013 5.65429 5.67563 5.75528 5.79603 5.91741 5.93684 5.99004 5.99817 6.03312 6.05693 6.51681 7.00439 7.55931 7.84340 7.93788 8.41353 8.45348 9.16911 10.79963 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.025167 B = 0.001797 C = 0.001767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.316972 B =15574.391958 C =15844.933591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.098 4.098 3 C -0.148 4.148 4 C -0.101 4.101 5 C -0.140 4.140 6 C 0.515 3.485 7 O -0.537 6.537 8 N -0.611 5.611 9 C 0.105 3.895 10 C -0.133 4.133 11 C -0.132 4.132 12 C 0.135 3.865 13 H 0.091 0.909 14 N -0.732 5.732 15 C 0.534 3.466 16 O -0.517 6.517 17 C -0.124 4.124 18 S -0.141 6.141 19 C -0.522 4.522 20 H 0.088 0.912 21 C 0.096 3.904 22 N -0.880 5.880 23 Si 0.857 3.143 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.236 1.236 27 C 0.106 3.894 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.070 0.930 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.055 0.945 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.087 0.913 40 H 0.072 0.928 41 H 0.081 0.919 42 H 0.071 0.929 43 H 0.067 0.933 44 H 0.076 0.924 45 H 0.400 0.600 46 H 0.098 0.902 47 H 0.098 0.902 48 H 0.271 0.729 49 H 0.099 0.901 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.844 20.926 -17.235 34.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.117 4.117 3 C -0.205 4.205 4 C -0.139 4.139 5 C -0.180 4.180 6 C 0.303 3.697 7 O -0.413 6.413 8 N -0.346 5.346 9 C -0.018 4.018 10 C -0.172 4.172 11 C -0.171 4.171 12 C 0.029 3.971 13 H 0.109 0.891 14 N -0.386 5.386 15 C 0.320 3.680 16 O -0.391 6.391 17 C -0.275 4.275 18 S 0.085 5.915 19 C -0.670 4.670 20 H 0.106 0.894 21 C -0.113 4.113 22 N -0.516 5.516 23 Si 0.682 3.318 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.160 1.160 27 C -0.018 4.018 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.112 0.888 38 H 0.113 0.887 39 H 0.106 0.894 40 H 0.090 0.910 41 H 0.099 0.901 42 H 0.090 0.910 43 H 0.085 0.915 44 H 0.095 0.905 45 H 0.234 0.766 46 H 0.116 0.884 47 H 0.116 0.884 48 H 0.081 0.919 49 H 0.117 0.883 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -19.282 21.042 -18.352 33.932 hybrid contribution -0.466 -0.430 1.235 1.388 sum -19.748 20.611 -17.117 33.284 Atomic orbital electron populations 1.21916 0.95295 1.01706 1.01855 1.21149 0.95854 0.96494 0.98186 1.21828 1.01178 0.95763 1.01751 1.21435 1.01975 0.92395 0.98055 1.21787 1.02772 0.97080 0.96346 1.20825 0.79228 0.81311 0.88298 1.90719 1.40458 1.65465 1.44697 1.48038 1.55780 1.08641 1.22116 1.21840 0.94709 0.93788 0.91453 1.21901 1.00820 0.96362 0.98085 1.21950 1.00166 0.99262 0.95718 1.21157 0.98389 0.90325 0.87235 0.89072 1.45906 1.29715 1.46891 1.16059 1.20289 0.79329 0.78911 0.89474 1.90699 1.51711 1.63889 1.32845 1.23283 1.04076 1.01626 0.98501 1.84786 1.29874 1.54302 1.22551 1.22317 1.16627 1.30364 0.97649 0.89375 1.24710 0.96731 0.94034 0.95803 1.69938 1.30473 1.27818 1.23421 0.86735 0.82439 0.78455 0.84218 1.19198 1.19931 1.15957 1.21739 0.98700 0.93771 0.87561 0.92743 0.92591 0.92594 0.91150 0.92552 0.92715 0.92602 0.91125 0.91069 0.88804 0.88705 0.89427 0.90953 0.90090 0.91036 0.91478 0.90485 0.76594 0.88414 0.88397 0.91940 0.88251 0.90977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.67 8.95 37.16 0.33 -0.34 16 2 C -0.10 -0.52 2.92 -90.62 -0.26 -0.78 16 3 C -0.15 -0.80 9.19 37.16 0.34 -0.46 16 4 C -0.10 -0.71 3.97 -26.73 -0.11 -0.81 16 5 C -0.14 -0.86 3.80 -27.88 -0.11 -0.97 16 6 C 0.51 5.08 7.70 -10.99 -0.08 5.00 16 7 O -0.54 -7.55 15.39 5.56 0.09 -7.46 16 8 N -0.61 -5.18 2.97 -172.81 -0.51 -5.69 16 9 C 0.10 0.57 6.34 -3.71 -0.02 0.55 16 10 C -0.13 -0.90 6.08 -26.61 -0.16 -1.07 16 11 C -0.13 -1.25 5.46 -26.69 -0.15 -1.39 16 12 C 0.14 1.50 2.60 -67.84 -0.18 1.33 16 13 H 0.09 1.29 7.58 -51.93 -0.39 0.89 16 14 N -0.73 -9.03 5.08 -53.72 -0.27 -9.30 16 15 C 0.53 9.30 7.81 -10.98 -0.09 9.21 16 16 O -0.52 -10.99 15.52 5.56 0.09 -10.90 16 17 C -0.12 -2.37 6.16 36.01 0.22 -2.15 16 18 S -0.14 -3.58 18.55 -107.50 -1.99 -5.58 16 19 C -0.52 -15.05 10.04 30.94 0.31 -14.74 16 20 H 0.09 2.65 8.03 -52.49 -0.42 2.22 16 21 C 0.10 2.81 5.50 -17.43 -0.10 2.71 16 22 N -0.88 -26.58 13.97 55.49 0.78 -25.81 16 23 Si 0.86 21.84 27.74 -169.99 -4.71 17.12 16 24 H -0.27 -6.75 7.11 56.52 0.40 -6.34 16 25 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 26 H -0.24 -5.99 6.74 56.52 0.38 -5.60 16 27 C 0.11 1.00 5.90 -3.74 -0.02 0.98 16 28 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.06 0.21 6.57 -51.93 -0.34 -0.14 16 30 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 34 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.07 0.58 8.10 -51.93 -0.42 0.16 16 36 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 37 H 0.09 0.45 7.69 -51.93 -0.40 0.05 16 38 H 0.09 0.41 6.37 -51.93 -0.33 0.07 16 39 H 0.09 0.30 5.93 -51.93 -0.31 -0.01 16 40 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.40 3.75 8.61 -40.82 -0.35 3.40 16 46 H 0.10 1.75 8.14 -51.92 -0.42 1.33 16 47 H 0.10 1.72 8.14 -51.92 -0.42 1.30 16 48 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 49 H 0.10 1.15 7.00 -51.93 -0.36 0.78 16 50 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 408.88 15.07 6.16 6.16 Total: -1.00 -35.88 408.88 -9.28 -45.16 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -8.82 Total: -0.76 kcal Atomic # 6 Polarization: -2.87 SS G_CDS: -0.07 Total: -2.94 kcal Atomic # 7 Polarization: -40.79 SS G_CDS: -0.01 Total: -40.80 kcal Atomic # 8 Polarization: -18.53 SS G_CDS: 0.17 Total: -18.36 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.71 Total: 17.12 kcal Atomic # 16 Polarization: -3.58 SS G_CDS: -1.99 Total: -5.58 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -35.88 -9.28 -45.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001293846549.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.915 kcal (2) G-P(sol) polarization free energy of solvation -35.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds