Wall clock time and date at job start Wed Apr 1 2020 01:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.46718 * 2 1 4 4 C 1.53000 * 109.47449 * 119.99789 * 2 1 3 5 5 C 1.50697 * 109.46692 * 64.99928 * 4 2 1 6 6 O 1.21278 * 120.00476 * 0.02562 * 5 4 2 7 7 N 1.34777 * 119.99664 * 180.02562 * 5 4 2 8 8 C 1.46500 * 120.00189 * 180.02562 * 7 5 4 9 9 H 1.09003 * 110.53867 * 323.83938 * 8 7 5 10 10 C 1.54265 * 110.48827 * 86.44990 * 8 7 5 11 11 C 1.53879 * 106.59910 * 142.28917 * 10 8 7 12 12 C 1.54269 * 106.59667 * 0.02562 * 11 10 8 13 13 H 1.08996 * 110.48202 * 95.19836 * 12 11 10 14 14 C 1.53001 * 110.48177 * 217.70894 * 12 11 10 15 15 N 1.46493 * 109.47084 * 293.54386 * 14 12 11 16 16 C 1.34784 * 119.99864 * 180.02562 * 15 14 12 17 17 O 1.21283 * 119.99649 * 359.72839 * 16 15 14 18 18 C 1.50694 * 119.99988 * 179.72721 * 16 15 14 19 19 S 1.81005 * 109.47244 * 179.97438 * 18 16 15 20 20 C 1.76192 * 100.00090 * 179.97438 * 19 18 16 21 21 H 1.08001 * 120.00308 * 0.02562 * 20 19 18 22 22 C 1.38797 * 119.99747 * 180.02562 * 20 19 18 23 23 N 1.31628 * 120.00171 * 359.97438 * 22 20 19 24 24 Si 1.86808 * 119.99848 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47362 * 89.99969 * 24 22 20 26 26 H 1.48505 * 109.46829 * 209.99955 * 24 22 20 27 27 H 1.48498 * 109.47111 * 329.99341 * 24 22 20 28 28 C 1.54888 * 110.48772 * 201.23032 * 8 7 5 29 29 H 1.09001 * 109.47523 * 300.00113 * 1 2 3 30 30 H 1.09002 * 109.47009 * 60.00437 * 1 2 3 31 31 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47279 * 240.00373 * 2 1 3 33 33 H 1.08999 * 109.46971 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.47024 * 299.99554 * 3 2 1 35 35 H 1.08996 * 109.47572 * 59.99988 * 3 2 1 36 36 H 1.09007 * 109.46953 * 305.00334 * 4 2 1 37 37 H 1.08998 * 109.47134 * 185.00244 * 4 2 1 38 38 H 0.97001 * 119.99965 * 0.02562 * 7 5 4 39 39 H 1.09004 * 110.03116 * 23.00592 * 10 8 7 40 40 H 1.08993 * 110.07688 * 261.60178 * 10 8 7 41 41 H 1.09001 * 110.02972 * 240.71689 * 11 10 8 42 42 H 1.09003 * 110.03010 * 119.28809 * 11 10 8 43 43 H 1.09007 * 109.46593 * 173.54643 * 14 12 11 44 44 H 1.09006 * 109.47216 * 53.55102 * 14 12 11 45 45 H 0.97000 * 120.00740 * 359.72857 * 15 14 12 46 46 H 1.08998 * 109.47224 * 299.99701 * 18 16 15 47 47 H 1.09002 * 109.47054 * 60.00213 * 18 16 15 48 48 H 0.97000 * 119.99868 * 179.97438 * 23 22 20 49 49 H 1.08995 * 110.75828 * 85.06737 * 28 8 7 50 50 H 1.08999 * 110.75503 * 321.68562 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6414 -2.1732 1.1889 6 8 1.0117 -2.5903 0.2400 7 7 1.9845 -3.0084 2.1895 8 6 1.5975 -4.4201 2.1306 9 1 0.6136 -4.5282 1.6742 10 6 2.6478 -5.2358 1.3489 11 6 2.7711 -6.5931 2.0633 12 6 1.7908 -6.5550 3.2539 13 1 0.8393 -7.0100 2.9792 14 6 2.3934 -7.2674 4.4665 15 7 2.5290 -8.6967 4.1756 16 6 3.0403 -9.5281 5.1051 17 8 3.3927 -9.0920 6.1805 18 6 3.1740 -10.9994 4.8081 19 16 3.8883 -11.8419 6.2421 20 6 3.9296 -13.4958 5.6360 21 1 3.5717 -13.7155 4.6410 22 6 4.4221 -14.5165 6.4374 23 7 4.8588 -14.2488 7.6499 24 14 4.4665 -16.2699 5.7946 25 1 5.7635 -16.5150 5.1141 26 1 4.3158 -17.2168 6.9286 27 1 3.3555 -16.4719 4.8302 28 6 1.6091 -5.0449 3.5479 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1299 1.4426 0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6766 1.9565 0.8899 36 1 1.6054 -0.2616 2.1370 37 1 3.1263 -0.6442 1.2951 38 1 2.4878 -2.6747 2.9486 39 1 3.6073 -4.7187 1.3616 40 1 2.3174 -5.3836 0.3208 41 1 3.7904 -6.7346 2.4227 42 1 2.4996 -7.3996 1.3821 43 1 1.7403 -7.1324 5.3287 44 1 3.3749 -6.8462 4.6847 45 1 2.2468 -9.0456 3.3156 46 1 2.1906 -11.4176 4.5933 47 1 3.8245 -11.1381 3.9445 48 1 5.2026 -14.9621 8.2101 49 1 0.6636 -4.8621 4.0584 50 1 2.4455 -4.6615 4.1322 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001511401921.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:46:00 Heat of formation + Delta-G solvation = -111.578034 kcal Electronic energy + Delta-G solvation = -26405.151071 eV Core-core repulsion = 22556.958724 eV Total energy + Delta-G solvation = -3848.192347 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.176 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.53807 -39.41161 -38.34291 -36.03991 -34.95906 -33.52370 -32.43032 -30.52138 -29.36918 -28.89601 -27.52802 -27.35608 -25.50883 -24.30343 -21.90415 -21.17606 -20.41212 -20.13532 -19.88023 -17.85298 -17.53369 -16.89582 -16.39708 -16.14911 -15.88295 -15.72002 -15.07495 -14.85751 -14.80365 -14.40995 -14.14458 -13.95266 -13.83849 -13.71209 -13.16050 -12.91512 -12.74462 -12.70205 -12.65259 -12.50237 -12.27881 -11.98626 -11.85154 -11.54659 -11.50432 -11.28962 -11.18130 -11.12068 -11.08624 -11.05580 -11.02464 -10.75890 -10.75484 -10.07832 -9.81622 -9.43995 -9.38253 -9.07210 -8.87792 -8.23803 -6.50169 -6.21880 -3.92405 2.27158 2.73867 3.05639 3.10382 3.22288 3.28144 3.32654 3.71961 4.05671 4.20345 4.20903 4.26398 4.36451 4.45571 4.50613 4.80483 4.90382 4.97846 5.01610 5.04752 5.09345 5.11226 5.13414 5.16234 5.17441 5.20467 5.26310 5.28236 5.41445 5.47546 5.54685 5.57187 5.67038 5.70801 5.72777 5.75359 5.80045 5.89214 5.90592 5.92825 6.02848 6.06324 6.14210 6.19139 6.62205 7.10135 7.59446 7.71219 7.86532 8.35068 8.61738 9.23562 10.85575 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.043562 B = 0.001391 C = 0.001372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.607173 B =20124.237387 C =20404.855252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.081 4.081 3 C -0.149 4.149 4 C -0.139 4.139 5 C 0.512 3.488 6 O -0.536 6.536 7 N -0.727 5.727 8 C 0.141 3.859 9 H 0.094 0.906 10 C -0.133 4.133 11 C -0.121 4.121 12 C -0.101 4.101 13 H 0.085 0.915 14 C 0.130 3.870 15 N -0.738 5.738 16 C 0.531 3.469 17 O -0.519 6.519 18 C -0.154 4.154 19 S -0.061 6.061 20 C -0.536 4.536 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.868 5.868 24 Si 0.918 3.082 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 C -0.121 4.121 29 H 0.047 0.953 30 H 0.052 0.948 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.054 0.946 34 H 0.057 0.943 35 H 0.055 0.945 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.401 0.599 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.072 0.928 42 H 0.068 0.932 43 H 0.066 0.934 44 H 0.066 0.934 45 H 0.398 0.602 46 H 0.089 0.911 47 H 0.089 0.911 48 H 0.268 0.732 49 H 0.077 0.923 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.171 29.288 -14.884 33.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.100 4.100 3 C -0.206 4.206 4 C -0.179 4.179 5 C 0.299 3.701 6 O -0.412 6.412 7 N -0.378 5.378 8 C 0.036 3.964 9 H 0.112 0.888 10 C -0.172 4.172 11 C -0.159 4.159 12 C -0.121 4.121 13 H 0.104 0.896 14 C 0.006 3.994 15 N -0.393 5.393 16 C 0.317 3.683 17 O -0.393 6.393 18 C -0.304 4.304 19 S 0.166 5.834 20 C -0.684 4.684 21 H 0.091 0.909 22 C -0.135 4.135 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.203 1.203 26 H -0.207 1.207 27 H -0.197 1.197 28 C -0.160 4.160 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.093 0.907 32 H 0.096 0.904 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.235 0.765 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.091 0.909 42 H 0.087 0.913 43 H 0.084 0.916 44 H 0.085 0.915 45 H 0.232 0.768 46 H 0.108 0.892 47 H 0.108 0.892 48 H 0.078 0.922 49 H 0.096 0.904 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.960 29.658 -13.598 33.361 hybrid contribution -0.186 -1.660 -1.650 2.348 sum -7.146 27.999 -15.248 32.672 Atomic orbital electron populations 1.21964 0.94703 1.03371 1.01074 1.20861 0.96667 0.95339 0.97113 1.21872 1.00897 0.95788 1.02055 1.21803 1.02916 0.92058 1.01103 1.20772 0.78880 0.88322 0.82109 1.90678 1.39529 1.78071 1.32948 1.46139 1.58146 1.09629 1.23911 1.21835 0.99018 0.79471 0.96060 0.88840 1.22531 0.99244 0.95658 0.99783 1.22224 1.00017 0.97112 0.96524 1.22170 0.99689 0.95095 0.95113 0.89615 1.21289 1.00884 0.80659 0.96593 1.45986 1.66851 1.07820 1.18630 1.20307 0.76221 0.87990 0.83760 1.90700 1.47429 1.77597 1.23592 1.23532 1.05356 0.94195 1.07355 1.85386 1.80347 1.03105 1.14579 1.22872 1.48924 0.92873 1.03743 0.90933 1.24985 0.94554 0.99384 0.94599 1.70017 1.39130 1.33359 1.07807 0.86174 0.78608 0.82289 0.78465 1.20269 1.20739 1.19694 1.22725 1.02980 0.94459 0.95812 0.93380 0.92928 0.90732 0.90443 0.92661 0.92340 0.92629 0.88891 0.88905 0.76505 0.91435 0.91262 0.90947 0.91322 0.91595 0.91535 0.76832 0.89239 0.89250 0.92187 0.90431 0.90275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 8.93 37.16 0.33 -0.72 16 2 C -0.08 -0.48 2.57 -90.62 -0.23 -0.71 16 3 C -0.15 -0.64 9.19 37.16 0.34 -0.30 16 4 C -0.14 -0.67 5.17 -27.88 -0.14 -0.81 16 5 C 0.51 3.88 7.54 -10.99 -0.08 3.79 16 6 O -0.54 -6.08 13.68 5.56 0.08 -6.00 16 7 N -0.73 -4.24 5.11 -52.20 -0.27 -4.51 16 8 C 0.14 0.97 3.16 -66.27 -0.21 0.76 16 9 H 0.09 0.79 7.67 -51.93 -0.40 0.40 16 10 C -0.13 -0.99 6.53 -25.61 -0.17 -1.15 16 11 C -0.12 -0.89 6.05 -25.61 -0.15 -1.04 16 12 C -0.10 -0.74 2.93 -88.94 -0.26 -1.00 16 13 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 14 C 0.13 1.38 4.99 -4.04 -0.02 1.36 16 15 N -0.74 -9.39 5.39 -60.29 -0.33 -9.71 16 16 C 0.53 9.75 7.85 -10.98 -0.09 9.66 16 17 O -0.52 -11.67 15.86 5.56 0.09 -11.58 16 18 C -0.15 -3.07 6.16 36.00 0.22 -2.85 16 19 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 20 C -0.54 -15.26 9.50 30.94 0.29 -14.96 16 21 H 0.07 1.95 7.80 -52.49 -0.41 1.55 16 22 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 23 N -0.87 -26.14 13.22 55.49 0.73 -25.41 16 24 Si 0.92 21.37 29.55 -169.99 -5.02 16.34 16 25 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 26 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 27 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 28 C -0.12 -0.73 5.92 -24.72 -0.15 -0.87 16 29 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.68 5.95 -51.93 -0.31 0.37 16 32 H 0.08 0.58 7.95 -51.93 -0.41 0.16 16 33 H 0.05 0.21 8.14 -51.93 -0.42 -0.22 16 34 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.05 0.21 8.14 -51.93 -0.42 -0.21 16 36 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.40 1.36 8.53 -40.82 -0.35 1.01 16 39 H 0.07 0.51 8.04 -51.93 -0.42 0.09 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.07 0.60 7.77 -51.93 -0.40 0.19 16 42 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.07 0.76 8.05 -51.93 -0.42 0.35 16 45 H 0.40 3.96 8.33 -40.82 -0.34 3.62 16 46 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 47 H 0.09 1.65 8.14 -51.91 -0.42 1.22 16 48 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 49 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 50 H 0.08 0.43 7.94 -51.93 -0.41 0.02 16 LS Contribution 417.04 15.07 6.28 6.28 Total: -1.00 -35.96 417.04 -9.98 -45.94 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -8.92 Total: -0.65 kcal Atomic # 6 Polarization: -6.44 SS G_CDS: -0.41 Total: -6.85 kcal Atomic # 7 Polarization: -39.77 SS G_CDS: 0.14 Total: -39.63 kcal Atomic # 8 Polarization: -17.75 SS G_CDS: 0.16 Total: -17.59 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -35.96 -9.98 -45.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001511401921.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.636 kcal (2) G-P(sol) polarization free energy of solvation -35.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds