Wall clock time and date at job start Wed Apr 1 2020 00:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53009 * 109.47121 * 2 1 4 4 C 1.52996 * 109.47150 * 119.99320 * 2 1 3 5 5 C 1.53001 * 115.54874 * 323.36463 * 4 2 1 6 6 C 1.53000 * 117.51501 * 109.05913 * 4 2 1 7 7 C 1.52996 * 117.50303 * 177.68830 * 4 2 1 8 8 H 1.09003 * 117.50096 * 144.97459 * 7 4 2 9 9 C 1.50701 * 117.49567 * 359.97438 * 7 4 2 10 10 O 1.21282 * 120.00304 * 325.33995 * 9 7 4 11 11 N 1.34779 * 120.00004 * 145.34732 * 9 7 4 12 12 C 1.46496 * 120.00168 * 359.97438 * 11 9 7 13 13 C 1.46504 * 119.99751 * 179.97438 * 11 9 7 14 14 C 1.53005 * 109.47015 * 90.00122 * 13 11 9 15 15 N 1.46504 * 109.47015 * 179.97438 * 14 13 11 16 16 C 1.34775 * 119.99997 * 179.97438 * 15 14 13 17 17 O 1.21280 * 119.99676 * 0.02562 * 16 15 14 18 18 C 1.50696 * 119.99744 * 179.97438 * 16 15 14 19 19 S 1.81007 * 109.46911 * 180.02562 * 18 16 15 20 20 C 1.76191 * 99.99939 * 180.02562 * 19 18 16 21 21 H 1.07997 * 120.00583 * 359.97438 * 20 19 18 22 22 C 1.38799 * 119.99827 * 179.97438 * 20 19 18 23 23 N 1.31630 * 120.00044 * 180.02562 * 22 20 19 24 24 Si 1.86797 * 120.00267 * 0.02562 * 22 20 19 25 25 H 1.48496 * 109.47531 * 89.99871 * 24 22 20 26 26 H 1.48502 * 109.47324 * 210.00308 * 24 22 20 27 27 H 1.48505 * 109.46739 * 329.99841 * 24 22 20 28 28 H 1.09006 * 109.46913 * 60.00611 * 1 2 3 29 29 H 1.08997 * 109.46887 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47512 * 300.00679 * 1 2 3 31 31 H 1.09000 * 109.47764 * 239.99809 * 2 1 3 32 32 H 1.08996 * 109.47200 * 173.14690 * 3 2 1 33 33 H 1.08999 * 109.46607 * 293.14199 * 3 2 1 34 34 H 1.08999 * 109.47250 * 53.13742 * 3 2 1 35 35 H 1.09001 * 109.46937 * 274.32527 * 5 4 2 36 36 H 1.08993 * 109.47455 * 34.32721 * 5 4 2 37 37 H 1.09009 * 109.47117 * 154.32734 * 5 4 2 38 38 H 1.08995 * 117.50315 * 359.97438 * 6 4 2 39 39 H 1.09003 * 117.49962 * 214.97451 * 6 4 2 40 40 H 1.09001 * 109.47342 * 270.00610 * 12 11 9 41 41 H 1.09006 * 109.47041 * 30.00393 * 12 11 9 42 42 H 1.08996 * 109.47186 * 150.00057 * 12 11 9 43 43 H 1.09000 * 109.47185 * 329.99731 * 13 11 9 44 44 H 1.09003 * 109.47057 * 209.99624 * 13 11 9 45 45 H 1.08997 * 109.47082 * 59.99432 * 14 13 11 46 46 H 1.09003 * 109.46802 * 299.99659 * 14 13 11 47 47 H 0.96999 * 119.99665 * 359.97438 * 15 14 13 48 48 H 1.08994 * 109.47580 * 299.99905 * 18 16 15 49 49 H 1.08997 * 109.47452 * 60.00486 * 18 16 15 50 50 H 0.97003 * 120.00285 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.2156 -0.5033 2.5197 6 6 2.6933 -2.0912 1.0574 7 6 3.5539 -0.8755 1.4074 8 1 3.9627 -0.8215 2.4164 9 6 4.4286 -0.3062 0.3203 10 8 4.0552 -0.3300 -0.8334 11 7 5.6261 0.2292 0.6300 12 6 6.0771 0.2583 2.0235 13 6 6.4766 0.7821 -0.4269 14 6 6.1509 2.2645 -0.6205 15 7 7.0019 2.8176 -1.6771 16 6 6.8897 4.1155 -2.0225 17 8 6.0845 4.8256 -1.4583 18 6 7.7654 4.6844 -3.1088 19 16 7.3800 6.4381 -3.3380 20 6 8.5145 6.8349 -4.6263 21 1 9.1709 6.0737 -5.0213 22 6 8.5645 8.1258 -5.1337 23 7 9.4117 8.4222 -6.0965 24 14 7.4297 9.4427 -4.4502 25 1 8.0957 10.1294 -3.3144 26 1 7.1213 10.4315 -5.5143 27 1 6.1697 8.8141 -3.9784 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 3.1230 1.4450 0.1226 33 1 1.7803 1.9197 -0.9450 34 1 1.5799 1.9906 0.8222 35 1 1.5477 0.4083 3.0165 36 1 0.1617 -0.4108 2.2575 37 1 1.3501 -1.3522 3.1902 38 1 2.7596 -2.4793 0.0410 39 1 2.5359 -2.8374 1.8362 40 1 5.7458 1.1844 2.4934 41 1 5.6556 -0.5921 2.5597 42 1 7.1652 0.2042 2.0544 43 1 6.2944 0.2454 -1.3580 44 1 7.5238 0.6742 -0.1443 45 1 6.3330 2.8011 0.3105 46 1 5.1037 2.3724 -0.9032 47 1 7.6460 2.2496 -2.1280 48 1 8.8123 4.5770 -2.8252 49 1 7.5844 4.1476 -4.0400 50 1 9.4470 9.3245 -6.4509 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580648321.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:39:59 Heat of formation + Delta-G solvation = -51.679419 kcal Electronic energy + Delta-G solvation = -27766.551517 eV Core-core repulsion = 23920.956569 eV Total energy + Delta-G solvation = -3845.594948 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.176 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.04621 -39.30549 -38.30101 -36.15234 -34.55751 -33.69009 -32.42778 -30.76272 -29.22412 -28.51882 -27.13955 -26.96006 -25.61950 -24.73927 -22.83385 -22.44702 -20.59570 -19.68256 -18.55679 -17.89457 -17.67119 -16.66058 -16.44151 -15.94566 -15.61193 -15.47484 -15.10380 -14.89981 -14.79444 -14.24809 -13.93982 -13.92451 -13.73346 -13.49067 -13.32433 -13.25766 -12.93626 -12.79479 -12.77235 -12.71990 -12.30952 -12.23188 -12.12329 -11.85500 -11.49217 -11.45578 -11.27120 -11.25613 -10.99785 -10.94330 -10.60652 -10.43215 -10.06863 -9.89693 -9.83798 -9.55362 -9.08480 -9.01988 -8.96402 -8.48807 -6.90600 -6.27831 -3.99436 2.09018 2.41288 2.84743 2.98771 3.33400 3.39044 3.47191 3.52025 3.71175 4.03762 4.22256 4.34368 4.38809 4.44976 4.61623 4.63351 4.68338 4.73575 4.77575 4.95702 5.01920 5.07926 5.11177 5.15345 5.17893 5.26818 5.28434 5.33795 5.34903 5.41175 5.53057 5.55381 5.62691 5.66800 5.69385 5.76451 5.78926 5.79437 5.82505 6.02044 6.04685 6.09874 6.22341 6.30214 6.51202 6.96297 7.59076 7.86762 7.95235 8.42778 8.49390 9.18358 10.81343 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.018831 B = 0.002052 C = 0.001936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.530703 B =13641.464459 C =14460.864795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.062 4.062 3 C -0.140 4.140 4 C -0.080 4.080 5 C -0.124 4.124 6 C -0.141 4.141 7 C -0.196 4.196 8 H 0.122 0.878 9 C 0.547 3.453 10 O -0.526 6.526 11 N -0.614 5.614 12 C 0.075 3.925 13 C 0.106 3.894 14 C 0.108 3.892 15 N -0.735 5.735 16 C 0.532 3.468 17 O -0.518 6.518 18 C -0.123 4.123 19 S -0.142 6.142 20 C -0.521 4.521 21 H 0.088 0.912 22 C 0.095 3.905 23 N -0.880 5.880 24 Si 0.857 3.143 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.235 1.235 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.091 0.909 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.047 0.953 35 H 0.061 0.939 36 H 0.074 0.926 37 H 0.057 0.943 38 H 0.104 0.896 39 H 0.102 0.898 40 H 0.059 0.941 41 H 0.075 0.925 42 H 0.074 0.926 43 H 0.091 0.909 44 H 0.084 0.916 45 H 0.065 0.935 46 H 0.070 0.930 47 H 0.400 0.600 48 H 0.097 0.903 49 H 0.098 0.902 50 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.905 -24.858 20.015 34.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.080 4.080 3 C -0.197 4.197 4 C -0.081 4.081 5 C -0.181 4.181 6 C -0.178 4.178 7 C -0.217 4.217 8 H 0.139 0.861 9 C 0.337 3.663 10 O -0.403 6.403 11 N -0.348 5.348 12 C -0.068 4.068 13 C -0.017 4.017 14 C -0.017 4.017 15 N -0.390 5.390 16 C 0.318 3.682 17 O -0.393 6.393 18 C -0.274 4.274 19 S 0.084 5.916 20 C -0.668 4.668 21 H 0.106 0.894 22 C -0.114 4.114 23 N -0.517 5.517 24 Si 0.682 3.318 25 H -0.192 1.192 26 H -0.199 1.199 27 H -0.159 1.159 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.109 0.891 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.080 0.920 36 H 0.093 0.907 37 H 0.076 0.924 38 H 0.122 0.878 39 H 0.120 0.880 40 H 0.078 0.922 41 H 0.094 0.906 42 H 0.093 0.907 43 H 0.110 0.890 44 H 0.102 0.898 45 H 0.084 0.916 46 H 0.088 0.912 47 H 0.234 0.766 48 H 0.116 0.884 49 H 0.116 0.884 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -13.373 -23.544 20.227 33.797 hybrid contribution 1.275 -0.314 -0.585 1.438 sum -12.098 -23.858 19.642 33.186 Atomic orbital electron populations 1.21925 0.95171 1.01498 1.01797 1.20745 0.95027 0.96270 0.96004 1.21834 1.01165 0.95298 1.01429 1.21580 0.89955 0.98661 0.97869 1.21527 1.00288 1.01791 0.94454 1.23232 1.00730 0.90290 1.03548 1.22509 0.93707 1.06125 0.99332 0.86061 1.19598 0.80594 0.76971 0.89165 1.90719 1.71624 1.57046 1.20874 1.47617 1.18686 1.60259 1.08215 1.21919 1.00976 1.02404 0.81458 1.21601 0.94298 0.93313 0.92491 1.21584 0.95890 0.92873 0.91393 1.45797 1.41933 1.11150 1.40106 1.20275 0.83454 0.81088 0.83430 1.90702 1.36426 1.58577 1.53553 1.23273 1.01965 1.02658 0.99512 1.84798 1.53718 1.02838 1.50214 1.22316 1.23155 1.00132 1.21246 0.89366 1.24717 0.94963 0.97813 0.93871 1.69939 1.35246 1.20935 1.25573 0.86731 0.83280 0.82299 0.79523 1.19227 1.19943 1.15905 0.92566 0.92751 0.92402 0.89122 0.92735 0.92608 0.93372 0.91977 0.90724 0.92372 0.87796 0.87976 0.92207 0.90622 0.90692 0.89027 0.89761 0.91630 0.91202 0.76643 0.88449 0.88376 0.91954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 8.29 37.16 0.31 -0.83 16 2 C -0.06 -0.58 2.17 -90.62 -0.20 -0.78 16 3 C -0.14 -1.55 8.61 37.16 0.32 -1.23 16 4 C -0.08 -0.60 1.86 -154.51 -0.29 -0.88 16 5 C -0.12 -0.70 9.54 37.16 0.35 -0.34 16 6 C -0.14 -0.95 9.37 -26.73 -0.25 -1.20 16 7 C -0.20 -1.45 5.19 -91.77 -0.48 -1.92 16 8 H 0.12 0.64 5.97 -51.93 -0.31 0.33 16 9 C 0.55 5.45 5.24 -10.98 -0.06 5.39 16 10 O -0.53 -6.94 12.67 5.56 0.07 -6.86 16 11 N -0.61 -5.08 2.87 -181.56 -0.52 -5.60 16 12 C 0.08 0.38 10.17 59.84 0.61 0.98 16 13 C 0.11 0.93 5.56 -4.04 -0.02 0.90 16 14 C 0.11 1.29 6.00 -4.04 -0.02 1.27 16 15 N -0.73 -9.58 5.56 -60.29 -0.33 -9.92 16 16 C 0.53 9.69 7.85 -10.99 -0.09 9.60 16 17 O -0.52 -11.54 15.86 5.56 0.09 -11.45 16 18 C -0.12 -2.42 6.16 36.00 0.22 -2.19 16 19 S -0.14 -3.65 18.55 -107.50 -1.99 -5.65 16 20 C -0.52 -15.14 10.04 30.94 0.31 -14.82 16 21 H 0.09 2.66 8.03 -52.49 -0.42 2.24 16 22 C 0.09 2.80 5.50 -17.43 -0.10 2.71 16 23 N -0.88 -26.73 13.97 55.49 0.78 -25.96 16 24 Si 0.86 22.01 27.74 -169.99 -4.71 17.29 16 25 H -0.27 -6.77 7.11 56.52 0.40 -6.36 16 26 H -0.27 -6.78 7.11 56.52 0.40 -6.37 16 27 H -0.24 -6.05 6.74 56.52 0.38 -5.67 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.40 6.39 -51.93 -0.33 0.07 16 31 H 0.09 1.05 6.41 -51.93 -0.33 0.71 16 32 H 0.05 0.67 5.07 -51.93 -0.26 0.41 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.07 0.40 5.58 -51.93 -0.29 0.11 16 37 H 0.06 0.26 7.90 -51.92 -0.41 -0.16 16 38 H 0.10 0.84 7.97 -51.93 -0.41 0.42 16 39 H 0.10 0.48 8.05 -51.93 -0.42 0.06 16 40 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.08 0.26 6.00 -51.93 -0.31 -0.05 16 42 H 0.07 0.28 7.89 -51.93 -0.41 -0.13 16 43 H 0.09 0.89 7.42 -51.93 -0.39 0.51 16 44 H 0.08 0.53 7.89 -51.93 -0.41 0.12 16 45 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.40 3.91 8.47 -40.82 -0.35 3.56 16 48 H 0.10 1.74 8.14 -51.92 -0.42 1.32 16 49 H 0.10 1.80 8.14 -51.92 -0.42 1.37 16 50 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 408.49 15.07 6.16 6.16 Total: -1.00 -36.17 408.49 -8.29 -44.46 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -8.44 Total: 0.89 kcal Atomic # 6 Polarization: -3.98 SS G_CDS: 0.63 Total: -3.36 kcal Atomic # 7 Polarization: -41.40 SS G_CDS: -0.08 Total: -41.48 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: 0.16 Total: -18.31 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.71 Total: 17.29 kcal Atomic # 16 Polarization: -3.65 SS G_CDS: -1.99 Total: -5.65 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -36.17 -8.29 -44.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580648321.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.220 kcal (2) G-P(sol) polarization free energy of solvation -36.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds