Wall clock time and date at job start Wed Apr 1 2020 01:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46838 * 2 1 4 4 C 1.53001 * 109.46965 * 240.00699 * 2 1 3 5 5 C 1.52998 * 109.47811 * 120.00275 * 2 1 3 6 6 C 1.50703 * 109.47090 * 59.99845 * 5 2 1 7 7 O 1.21286 * 119.99741 * 355.37803 * 6 5 2 8 8 N 1.34766 * 120.00109 * 175.37452 * 6 5 2 9 9 C 1.46501 * 120.00218 * 5.92448 * 8 6 5 10 10 C 1.53000 * 109.47426 * 89.99839 * 9 8 6 11 11 N 1.46498 * 109.47145 * 180.02562 * 10 9 8 12 12 C 1.34776 * 119.99993 * 180.02562 * 11 10 9 13 13 O 1.21284 * 119.99685 * 359.97438 * 12 11 10 14 14 C 1.50701 * 120.00110 * 179.97438 * 12 11 10 15 15 S 1.81006 * 109.47017 * 179.97438 * 14 12 11 16 16 C 1.76199 * 99.99589 * 179.97438 * 15 14 12 17 17 H 1.08001 * 120.00563 * 359.97438 * 16 15 14 18 18 C 1.38802 * 119.99629 * 179.97438 * 16 15 14 19 19 N 1.31622 * 120.00266 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99880 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47088 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47261 * 120.00312 * 20 18 16 23 23 H 1.48498 * 109.46970 * 240.00445 * 20 18 16 24 24 C 1.46497 * 120.00055 * 185.91948 * 8 6 5 25 25 C 1.53003 * 117.49987 * 16.51327 * 24 8 6 26 26 C 1.52999 * 117.50146 * 307.85178 * 24 8 6 27 27 H 1.09000 * 109.47071 * 299.99612 * 1 2 3 28 28 H 1.08994 * 109.47589 * 59.99981 * 1 2 3 29 29 H 1.09006 * 109.46967 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47262 * 180.02562 * 3 2 1 31 31 H 1.08995 * 109.47478 * 300.00045 * 3 2 1 32 32 H 1.09000 * 109.46972 * 60.00328 * 3 2 1 33 33 H 1.08997 * 109.46919 * 299.99244 * 4 2 1 34 34 H 1.08995 * 109.47557 * 59.99829 * 4 2 1 35 35 H 1.09005 * 109.47200 * 179.97438 * 4 2 1 36 36 H 1.09001 * 109.46962 * 300.00770 * 5 2 1 37 37 H 1.08993 * 109.47778 * 180.02562 * 5 2 1 38 38 H 1.08999 * 109.47510 * 210.00286 * 9 8 6 39 39 H 1.09005 * 109.46980 * 329.99491 * 9 8 6 40 40 H 1.08999 * 109.46905 * 300.00175 * 10 9 8 41 41 H 1.08996 * 109.47273 * 60.00026 * 10 9 8 42 42 H 0.97001 * 120.00006 * 359.97438 * 11 10 9 43 43 H 1.08999 * 109.46932 * 299.99543 * 14 12 11 44 44 H 1.08996 * 109.47326 * 59.99443 * 14 12 11 45 45 H 0.96997 * 120.00622 * 180.02562 * 19 18 16 46 46 H 1.09010 * 115.55311 * 162.18250 * 24 8 6 47 47 H 1.08999 * 117.49453 * 0.02562 * 25 24 8 48 48 H 1.09001 * 117.49628 * 145.01684 * 25 24 8 49 49 H 1.09000 * 117.49907 * 214.97673 * 26 24 8 50 50 H 1.08998 * 117.49672 * 359.97438 * 26 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7211 -1.2493 5 6 2.0401 -0.7213 1.2491 6 6 1.5379 -2.1421 1.2491 7 8 0.7730 -2.5149 0.3848 8 7 1.9386 -2.9985 2.2094 9 6 2.7572 -2.5173 3.3250 10 6 1.8463 -2.0637 4.4676 11 7 2.6649 -1.5819 5.5829 12 6 2.0738 -1.1294 6.7064 13 8 0.8642 -1.1207 6.7939 14 6 2.9159 -0.6344 7.8540 15 16 1.8382 -0.0976 9.2056 16 6 3.0498 0.4151 10.3776 17 1 4.1000 0.3382 10.1376 18 6 2.6545 0.9178 11.6096 19 7 1.3747 1.0111 11.9024 20 14 3.9390 1.4621 12.8520 21 1 5.2956 1.2568 12.2837 22 1 3.7465 2.9008 13.1650 23 1 3.7961 0.6616 14.0946 24 6 1.5556 -4.4107 2.1378 25 6 1.0475 -4.9377 0.7943 26 6 0.0709 -4.7317 1.9549 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 3.1299 1.4426 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.6767 -1.7488 -1.2494 34 1 1.6766 -0.2073 -2.1393 35 1 3.1300 -0.7207 -1.2496 36 1 1.6767 -0.2076 2.1392 37 1 3.1301 -0.7209 1.2494 38 1 3.4047 -3.3216 3.6741 39 1 3.3678 -1.6780 2.9920 40 1 1.1988 -1.2593 4.1185 41 1 1.2357 -2.9029 4.8006 42 1 3.6324 -1.5892 5.5130 43 1 3.5636 -1.4387 8.2028 44 1 3.5263 0.2051 7.5211 45 1 1.0984 1.3627 12.7631 46 1 2.1450 -5.0896 2.7543 47 1 0.9986 -4.2337 -0.0364 48 1 1.3023 -5.9633 0.5271 49 1 -0.3164 -5.6218 2.4506 50 1 -0.6210 -3.8921 1.8882 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001688479621.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:10:23 Heat of formation + Delta-G solvation = -45.796352 kcal Electronic energy + Delta-G solvation = -27840.248941 eV Core-core repulsion = 23994.909101 eV Total energy + Delta-G solvation = -3845.339840 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.176 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.09378 -39.23416 -37.93414 -36.21915 -35.60387 -33.82015 -32.45927 -30.22849 -28.79422 -27.83769 -27.44294 -27.36007 -25.51477 -23.50336 -23.05692 -22.54580 -20.61206 -19.81725 -18.81882 -17.94001 -17.33913 -16.65659 -16.43399 -16.13486 -15.49008 -15.39759 -15.14222 -14.83296 -14.72490 -14.59141 -14.19191 -14.07869 -13.86020 -13.43167 -13.35063 -12.90023 -12.88845 -12.57885 -12.46940 -12.34819 -12.28786 -12.00845 -11.73064 -11.60980 -11.53526 -11.21490 -11.12520 -11.09519 -11.05213 -10.97491 -10.88645 -10.78969 -10.60464 -9.84314 -9.52540 -9.43651 -9.11357 -9.01541 -8.74580 -8.26915 -6.53723 -6.24714 -3.95626 2.18324 2.37797 3.02064 3.03728 3.19393 3.26493 3.30854 3.61643 3.73337 4.11569 4.17216 4.34928 4.43940 4.50872 4.57062 4.63553 4.76378 4.85298 4.87789 4.94768 5.10650 5.10759 5.17332 5.21717 5.25022 5.27763 5.40928 5.50194 5.53002 5.55540 5.56077 5.63117 5.73909 5.75045 5.80082 5.83738 5.86545 5.89895 6.00159 6.07656 6.08382 6.21356 6.34232 6.37775 6.47671 6.99639 7.56422 7.58568 7.86877 8.32310 8.52503 9.20757 10.82752 Molecular weight = 342.18amu Principal moments of inertia in cm(-1) A = 0.016027 B = 0.002083 C = 0.001941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.609932 B =13439.990075 C =14421.316637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.051 4.051 3 C -0.144 4.144 4 C -0.150 4.150 5 C -0.136 4.136 6 C 0.520 3.480 7 O -0.519 6.519 8 N -0.583 5.583 9 C 0.101 3.899 10 C 0.104 3.896 11 N -0.739 5.739 12 C 0.533 3.467 13 O -0.514 6.514 14 C -0.153 4.153 15 S -0.061 6.061 16 C -0.535 4.535 17 H 0.073 0.927 18 C 0.073 3.927 19 N -0.867 5.867 20 Si 0.919 3.081 21 H -0.272 1.272 22 H -0.280 1.280 23 H -0.280 1.280 24 C 0.066 3.934 25 C -0.190 4.190 26 C -0.184 4.184 27 H 0.047 0.953 28 H 0.049 0.951 29 H 0.087 0.913 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.077 0.923 34 H 0.051 0.949 35 H 0.045 0.955 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.067 0.933 41 H 0.072 0.928 42 H 0.399 0.601 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.268 0.732 46 H 0.128 0.872 47 H 0.136 0.864 48 H 0.088 0.912 49 H 0.095 0.905 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.677 -7.653 -25.789 27.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.051 4.051 3 C -0.201 4.201 4 C -0.207 4.207 5 C -0.176 4.176 6 C 0.311 3.689 7 O -0.396 6.396 8 N -0.314 5.314 9 C -0.023 4.023 10 C -0.022 4.022 11 N -0.394 5.394 12 C 0.319 3.681 13 O -0.387 6.387 14 C -0.303 4.303 15 S 0.166 5.834 16 C -0.683 4.683 17 H 0.091 0.909 18 C -0.136 4.136 19 N -0.502 5.502 20 Si 0.745 3.255 21 H -0.196 1.196 22 H -0.206 1.206 23 H -0.206 1.206 24 C -0.038 4.038 25 C -0.227 4.227 26 C -0.222 4.222 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.106 0.894 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.096 0.904 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.115 0.885 37 H 0.110 0.890 38 H 0.107 0.893 39 H 0.107 0.893 40 H 0.085 0.915 41 H 0.090 0.910 42 H 0.232 0.768 43 H 0.109 0.891 44 H 0.109 0.891 45 H 0.078 0.922 46 H 0.146 0.854 47 H 0.153 0.847 48 H 0.106 0.894 49 H 0.113 0.887 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 3.110 -7.771 -25.971 27.287 hybrid contribution 2.751 0.364 0.964 2.938 sum 5.861 -7.408 -25.007 26.732 Atomic orbital electron populations 1.22166 0.93880 1.04376 1.00946 1.20274 0.96592 0.94567 0.93668 1.21908 1.00807 0.95238 1.02147 1.22047 0.99883 1.02326 0.96411 1.21910 1.02217 0.92409 1.01022 1.20788 0.80206 0.87546 0.80375 1.90438 1.34401 1.77129 1.37656 1.47253 1.52851 1.07683 1.23649 1.21766 0.93039 1.01084 0.86406 1.21646 0.94129 1.00133 0.86255 1.45860 1.09991 1.67647 1.15949 1.20333 0.88801 0.76462 0.82549 1.90723 1.14389 1.52990 1.80640 1.23525 1.03687 1.03875 0.99254 1.85442 1.09037 1.81459 1.07486 1.22897 0.94070 1.49114 1.02253 0.90852 1.25002 0.96003 0.95090 0.97539 1.70020 1.14389 1.43013 1.22814 0.86112 0.80650 0.78379 0.80318 1.19615 1.20557 1.20559 1.21733 0.97286 0.82148 1.02587 1.23819 1.02420 1.02170 0.94305 1.23255 0.92863 1.03431 1.02696 0.93409 0.93185 0.89416 0.92714 0.92351 0.92428 0.90381 0.92987 0.93583 0.88531 0.88960 0.89259 0.89259 0.91489 0.91012 0.76757 0.89144 0.89137 0.92201 0.85428 0.84660 0.89409 0.88662 0.88360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.47 8.18 37.16 0.30 -1.17 16 2 C -0.05 -0.41 0.77 -154.51 -0.12 -0.52 16 3 C -0.14 -1.02 8.47 37.16 0.31 -0.71 16 4 C -0.15 -1.21 8.18 37.16 0.30 -0.90 16 5 C -0.14 -1.02 3.30 -27.88 -0.09 -1.11 16 6 C 0.52 4.76 6.86 -10.99 -0.08 4.69 16 7 O -0.52 -5.70 7.12 5.55 0.04 -5.66 16 8 N -0.58 -4.72 2.84 -166.10 -0.47 -5.19 16 9 C 0.10 0.65 5.46 -4.04 -0.02 0.63 16 10 C 0.10 1.06 6.00 -4.04 -0.02 1.03 16 11 N -0.74 -8.45 5.56 -60.30 -0.33 -8.79 16 12 C 0.53 9.32 7.85 -10.99 -0.09 9.23 16 13 O -0.51 -11.34 15.86 5.55 0.09 -11.25 16 14 C -0.15 -2.91 6.16 36.01 0.22 -2.69 16 15 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 16 C -0.54 -14.95 9.50 30.94 0.29 -14.65 16 17 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 18 C 0.07 2.05 5.49 -17.43 -0.10 1.96 16 19 N -0.87 -25.88 13.22 55.49 0.73 -25.14 16 20 Si 0.92 21.08 29.55 -169.99 -5.02 16.05 16 21 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 22 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 23 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 24 C 0.07 0.54 6.62 -67.93 -0.45 0.09 16 25 C -0.19 -1.65 9.63 -26.69 -0.26 -1.91 16 26 C -0.18 -1.70 9.88 -26.69 -0.26 -1.96 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.09 0.97 5.35 -51.93 -0.28 0.69 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.08 0.75 5.68 -51.93 -0.30 0.46 16 34 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.10 0.74 7.73 -51.93 -0.40 0.34 16 37 H 0.09 0.53 7.37 -51.93 -0.38 0.15 16 38 H 0.09 0.44 8.03 -51.93 -0.42 0.02 16 39 H 0.09 0.43 6.32 -51.93 -0.33 0.10 16 40 H 0.07 0.79 7.73 -51.93 -0.40 0.38 16 41 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.40 3.15 8.47 -40.82 -0.35 2.80 16 43 H 0.09 1.58 8.14 -51.92 -0.42 1.15 16 44 H 0.09 1.57 8.14 -51.92 -0.42 1.15 16 45 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 46 H 0.13 0.82 8.09 -51.92 -0.42 0.40 16 47 H 0.14 1.43 5.23 -52.09 -0.27 1.15 16 48 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 49 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 50 H 0.10 1.11 7.59 -51.93 -0.39 0.71 16 LS Contribution 409.80 15.07 6.18 6.18 Total: -1.00 -34.52 409.80 -9.61 -44.12 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -8.55 Total: 1.51 kcal Atomic # 6 Polarization: -7.95 SS G_CDS: -0.05 Total: -8.00 kcal Atomic # 7 Polarization: -39.05 SS G_CDS: -0.07 Total: -39.12 kcal Atomic # 8 Polarization: -17.04 SS G_CDS: 0.13 Total: -16.91 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -34.52 -9.61 -44.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688479621.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.676 kcal (2) G-P(sol) polarization free energy of solvation -34.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds